Factsheet for Bra016727.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21101	Canola	cytosol, mitochondrion	96.39	96.39
CDY50164	Canola	cytosol	95.36	95.36
AT1G13540.1	Thale cress	cytosol	76.29	77.69
AT1G13510.1	Thale cress	cytosol	73.45	75.0
Bra026901.1-P	Field mustard	cytosol	62.37	63.68
Bra026902.1-P	Field mustard	cytosol	61.34	62.63
Bra016728.1-P	Field mustard	cytosol	59.28	59.59
Bra019719.1-P	Field mustard	cytosol	54.9	55.91
Bra026900.1-P	Field mustard	cytosol	53.35	52.81
PGSC0003DMT400019462	Potato	cytosol	45.88	45.06
Solyc05g010470.2.1	Tomato	cytosol	36.34	44.62
VIT_01s0011g02320.t01	Wine grape	cytosol	44.07	43.73
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	44.33	43.32
PGSC0003DMT400019458	Potato	cytosol	37.63	43.2
KRH71102	Soybean	cytosol	42.01	42.67
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	36.08	41.54
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	42.01	41.27
KRH71091	Soybean	cytosol	42.01	41.16
PGSC0003DMT400059315	Potato	cytosol	28.87	40.14
GSMUA_Achr5P27360_001	Banana	mitochondrion	37.89	38.28
GSMUA_Achr5P27350_001	Banana	mitochondrion	37.11	37.11
GSMUA_Achr3P06220_001	Banana	cytosol	36.08	36.55
GSMUA_Achr9P18410_001	Banana	cytosol	33.76	34.29
Os08t0413200-00	Rice	cytosol	37.11	34.2
Os08t0412700-01	Rice	cytosol, plasma membrane	32.22	33.07
Os08t0413100-00	Rice	cytosol, plasma membrane	35.31	33.01
Os08t0413500-00	Rice	cytosol, plasma membrane	33.76	32.19
TraesCS7D01G441700.1	Wheat	cytosol	37.63	32.02
Zm00001d050302_P001	Maize	cytosol, plastid	30.67	31.73
OQU80420	Sorghum	cytosol	30.15	31.54
Bra038594.1-P	Field mustard	nucleus	38.14	31.42
Os08t0412800-01	Rice	plasma membrane	30.41	30.65
EES09009	Sorghum	cytosol	34.79	30.47
TraesCS4B01G190200.1	Wheat	cytosol	30.67	30.05
TraesCS4D01G191600.1	Wheat	cytosol	30.41	30.03
TraesCS4A01G113900.1	Wheat	cytosol	29.9	29.59

Protein Annotations

EnsemblPlants:Bra016727.1	EnsemblPlants:Bra016727.1-P	EnsemblPlantsGene:Bra016727	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2
PFAM:PF06880	SEG:seg	UniParc:UPI0002545E61	UniProt:M4DJP9	MapMan:35.2	:

Description

AT1G13540 (E=4e-169) | unknown protein

Coordinates

chrA08:+:19686800..19688114

Molecular Weight (calculated)

44611.8 Da

IEP (calculated)

6.138

GRAVY (calculated)

-0.581

Length

388 amino acids

Sequence
(BLAST)

001: MYITRRLSEY RRNPSELTQP PPEGPSSGVL VIHDQHSQIQ STCCFGSCEV VECNHSGLPL TQNLKLAVLF NSGGDDSTND PIVFIPVLDK PLSSNCYYAI
101: RRPGKYSGEA STSAKEEDIV SCCLCLTQVP EAKPKQLDPY DIYQQFEIHQ KKPSSRYYHA TYVAPDGVPP WFLKKKEWTV SYSRSQEFEL RDDAKGLNKE
201: LRGKLPALGE SVVVGKWYVP FIFVKERDAK DQIKRSVYHS MTLEQRWEEV FSYENDKSEN GDVVVDVEVE DEVVKLGGQE ITRGVNENGF VWFGVGDRKI
301: GLRSVVVERM KWEEERFGWR SKGEQERAMV VKRLEENPKD GSFWKSYHCY VLIESFVLKR MDESLVLTYE FRHADKLKSK WSELVGAT

Best Arabidopsis Sequence Match ( AT1G13540.1 )
(BLAST)

001: MYITRSFSEY RRNPAELTQP PPEGPNSGIL VIQDQHSRTR ATSCFGSWLV VDSSLSGLPL PQNLKLAVTF NIGGDDSTRD PVVFIPVLDK PLSSNCYYAI
101: KRHGKHSGEA SGSAKEDDIV SCCFCSSFVP EAKPKQLDPF DMYQQFKIHQ KEPSSRCYYA TSVAPDGVPP WFLRKKEWTV EYSRFQDFEL RDDAKGLITE
201: LRTELPLLGM STVVGKWYVP FIFVKEREVK DQIKNSMYYS MTLEQRWKEL FSDENDKSEN RDVVVDVEVE TEVVKLEGQM IERGLEANGF VWFGVGDKKI
301: GLGSVVVERM KWEEERFGWT GKGDNERSMT VKRLEKSTDG SLWKHYHCYV LIESFVLKRM DESLVLTYEF THVDKLKTKW D

Arabidopsis Description

At1g13540 [Source:UniProtKB/TrEMBL;Acc:Q6NM24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.