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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • mitochondrion 3
  • cytosol 3
  • plastid 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:secretory
iPSORT:mitochondrion
MultiLoc:cytosol
Plant-mPloc:nucleus, plastid
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400012249
PGSC0003DMT400020128
PGSC0003DMT400044692

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13520.1 PGSC0003DMT400020128 AT2G42790.1 21798944
AT1G13520.1 PGSC0003DMT400044692 AT2G42790.1 21798944
AT1G13520.1 PGSC0003DMT400012249 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc05g010470.2.1 Tomato cytosol 73.92 92.41
PGSC0003DMT400019458 Potato cytosol 71.39 83.43
PGSC0003DMT400059315 Potato cytosol 58.48 82.8
VIT_01s0011g02320.t01 Wine grape cytosol 56.2 56.78
VIT_01s0011g02330.t01 Wine grape cytosol, mitochondrion 53.92 53.92
KRH71102 Soybean cytosol 51.9 53.66
KRH71091 Soybean cytosol 48.61 48.48
AT1G13510.1 Thale cress cytosol 45.82 47.63
KRH63067 Soybean cytosol, golgi, mitochondrion, nucleus 40.51 47.48
CDY26653 Canola cytosol 42.53 47.19
Bra026902.1-P Field mustard cytosol 44.3 46.05
CDY16094 Canola cytosol 44.3 46.05
Bra016727.1-P Field mustard cytosol 45.06 45.88
AT1G13490.2 Thale cress cytosol 44.3 45.81
CDY50165 Canola cytosol 44.3 45.69
CDX98103 Canola cytosol 42.78 45.68
Bra019719.1-P Field mustard cytosol 44.05 45.67
CDY50164 Canola cytosol 44.81 45.62
Bra026901.1-P Field mustard cytosol 43.8 45.53
CDY30029 Canola cytosol 43.8 45.41
CDY26654 Canola cytosol 43.54 45.26
AT1G13530.1 Thale cress cytosol 44.05 45.19
CDY21101 Canola cytosol, mitochondrion 44.3 45.1
AT1G13540.1 Thale cress cytosol 43.29 44.88
Bra016728.1-P Field mustard cytosol 43.54 44.56
CDY21100 Canola cytosol 43.54 44.56
AT1G13520.1 Thale cress cytosol 43.54 44.44
AT1G13480.1 Thale cress nucleus 43.04 43.93
CDY21099 Canola cytosol 42.53 43.75
AT1G13550.1 Thale cress cytosol 42.53 43.3
AT1G13500.1 Thale cress cytosol 42.28 43.26
AT1G13470.1 Thale cress cytosol 41.27 43.01
CDY16092 Canola cytosol 30.63 42.61
GSMUA_Achr5P27350_001 Banana mitochondrion 41.27 42.01
CDY16095 Canola cytosol 41.77 41.98
GSMUA_Achr5P27360_001 Banana mitochondrion 40.76 41.93
CDY50167 Canola cytosol 40.51 41.34
CDY26655 Canola cytosol 40.76 41.07
Bra026900.1-P Field mustard cytosol 40.76 41.07
GSMUA_Achr3P06220_001 Banana cytosol 37.97 39.16
PGSC0003DMT400026205 Potato mitochondrion 38.73 38.44
Zm00001d050302_P001 Maize cytosol, plastid 36.46 38.4
GSMUA_Achr9P18410_001 Banana cytosol 36.46 37.7
Os08t0412700-01 Rice cytosol, plasma membrane 35.95 37.57
TraesCS4A01G113900.1 Wheat cytosol 36.71 36.99
TraesCS4D01G191600.1 Wheat cytosol 36.71 36.9
Os08t0413200-00 Rice cytosol 38.99 36.58
TraesCS4B01G190200.1 Wheat cytosol 35.95 35.86
Os08t0413100-00 Rice cytosol, plasma membrane 37.47 35.66
Os08t0413500-00 Rice cytosol, plasma membrane 36.71 35.63
OQU80420 Sorghum cytosol 32.91 35.04
CDY16093 Canola cytosol 30.13 34.59
Os08t0412800-01 Rice plasma membrane 33.42 34.29
EES09009 Sorghum cytosol 35.95 32.05
TraesCS7D01G441700.1 Wheat cytosol 36.71 31.8
Protein Annotations
EnsemblPlants:PGSC0003DMT400019462EnsemblPlantsGene:PGSC0003DMG400007521EntrezGene:102603055InterPro:DUF1262PANTHER:PTHR31050PANTHER:PTHR31050:SF2
PFAM:PF06880PGSC:PGSC0003DMG400007521RefSeq:XP_006348621.1UniParc:UPI0002965A89UniProt:M1AC50MapMan:35.2
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007521]
Coordinates
chr5:+:1247925..1250012
Molecular Weight (calculated)
46115.7 Da
IEP (calculated)
7.715
GRAVY (calculated)
-0.671
Length
395 amino acids
Sequence
(BLAST)
001: MYVTRPLSYY QRNPDALSLP PEGPNSGYLV IQDEESETYC CFGLCKNYDI MDMPIPQNKK LTVRYESGSG ENRSVRRDRV MFIPVLNKPL SSNQYYAIKR
101: HGKRKGQAFT CSTEEDKQTC CFCRCIQDVK PKPLDPEEAY QQFEICLYDT GCNAKGNFFA KSLAPDGFPP YFLRRKGWHL SAETPKNYEL NDDALGLNPE
201: LRQQLPQFNF TSSCKSSEVV VVGKWYCPFA FIKDGTELKE QMKRSIFYEM TLEQRWEQFF TCQNDKLNEG NSVLVDVALD TEVVLIAGTN KATWDDRNVV
301: EGVIWFKSYG KDGNEVSSLG LRREIVERMK WEQQRGGWQN QGRIKQVEEN RENSSGWRRF SCYVLVERFV LRRMDRSLVM TYDFKHIDKV KSIWE
Best Arabidopsis Sequence Match ( AT1G13530.1 )
(BLAST)
001: MYVTKRLSEY QRNPSELTFL PTEGPNSGVL VIQDEESQPT CCFGKCFGCD LNGLPFPQNT RVTVKYQIGH GDDRIVLLDS VAFIPVLHQP PSSNLYYVIR
101: RRGKHAGEAC VSAKEEDKVS CCLCFTYVSN ATPRLLDPFD IYQQFEIHQR GSSTRKFFAT SVASDGIPPR FLRRKGWTVP FSASQDYGLI DDAKGVVDAK
201: LRYELPDFGK SVVVGKWYVP FLFVKEGDAK DQMKKSMYYS MTLHQRFEEV FFCENVDNKN CEVIVDVEVE TEVVKLEGEN IGRETKGVNS DGVVWFGVSE
301: TQKIGIGSVV LERMKWEEER FGWSKKGNEL KSSIKRTEKF EGGGPQWKSY RCYVLVETFE LKKTDGSLVL TYEFRHVDKL KSKWD
Arabidopsis Description
Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13530]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.