CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26655	Canola	cytosol	95.93	96.17
AT1G13550.1	Thale cress	cytosol	81.93	82.99
CDY21100	Canola	cytosol	54.45	55.44
CDY50165	Canola	cytosol	53.69	55.09
CDY16094	Canola	cytosol	52.67	54.47
CDY26654	Canola	cytosol	52.67	54.47
CDY26653	Canola	cytosol	48.6	53.65
CDY21099	Canola	cytosol	52.42	53.65
CDY21101	Canola	cytosol, mitochondrion	51.91	52.58
CDY50164	Canola	cytosol	51.65	52.32
CDY50167	Canola	cytosol	51.4	52.2
CDX98103	Canola	cytosol	48.6	51.62
CDY30029	Canola	cytosol	49.36	50.92
CDY16092	Canola	cytosol	35.88	49.65
PGSC0003DMT400019462	Potato	cytosol	41.98	41.77
CDY16093	Canola	cytosol	36.39	41.57
VIT_01s0011g02320.t01	Wine grape	cytosol	39.69	39.9
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	38.93	38.54
PGSC0003DMT400019458	Potato	cytosol	33.08	38.46
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	32.82	38.28
VIT_01s0011g02330.t01	Wine grape	cytosol, mitochondrion	37.91	37.72
KRH71102	Soybean	cytosol	36.64	37.7
KRH71091	Soybean	cytosol	37.4	37.12
Solyc05g010470.2.1	Tomato	cytosol	29.01	36.08
PGSC0003DMT400059315	Potato	cytosol	25.19	35.48
CDY15029	Canola	cytosol, mitochondrion	36.13	33.49
GSMUA_Achr5P27360_001	Banana	mitochondrion	32.32	33.07
GSMUA_Achr5P27350_001	Banana	mitochondrion	32.32	32.73
CDY48822	Canola	cytosol	17.3	32.38
GSMUA_Achr3P06220_001	Banana	cytosol	31.55	32.38
Os08t0413200-00	Rice	cytosol	33.33	31.12
Os08t0413100-00	Rice	cytosol, plasma membrane	32.82	31.08
GSMUA_Achr9P18410_001	Banana	cytosol	29.77	30.63
CDY26357	Canola	mitochondrion	35.37	29.51
Zm00001d050302_P001	Maize	cytosol, plastid	27.99	29.33
Os08t0413500-00	Rice	cytosol, plasma membrane	30.28	29.24
CDY47587	Canola	nucleus	13.49	28.96
EES09009	Sorghum	cytosol	32.06	28.44
Os08t0412700-01	Rice	cytosol, plasma membrane	27.23	28.31
OQU80420	Sorghum	cytosol	26.46	28.03
Os08t0412800-01	Rice	plasma membrane	26.97	27.53
TraesCS4D01G191600.1	Wheat	cytosol	27.48	27.48
TraesCS4B01G190200.1	Wheat	cytosol	27.48	27.27
TraesCS4A01G113900.1	Wheat	cytosol	26.97	27.04
TraesCS7D01G441700.1	Wheat	cytosol	30.79	26.54

Protein Annotations

EnsemblPlants:CDY16095	EnsemblPlantsGene:GSBRNA2T00090508001	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2	PFAM:PF06880
ProteinID:CDY16095	ProteinID:CDY16095.1	UniParc:UPI0004EBBF87	UniProt:A0A078FNT4	MapMan:35.2	:

Description

BnaC08g40280DBnaC08g40280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FNT4]

Coordinates

chrLK032060:-:573706..575468

Molecular Weight (calculated)

45510.5 Da

IEP (calculated)

6.772

GRAVY (calculated)

-0.370

Length

393 amino acids

Sequence
(BLAST)

001: MYVTRALSEY RKNPSELKKP PPEGPNSGVL VIQDEESLTT CCFGLCNETL FRGLPFPQNA ALTVIHNYGS HRDNVRRDPA VFIPVLGLPL SSNRYYTYER
101: CGYYSRESST STEKEVERVT CCFCIKFNHV HMYKKPQPDP YEIHRQVVIR TTSAPSCSYY HAKPADPNAI LPAFLMRSWT IENSTSTLRD FGLIDDAKGL
201: NVELRSTLPG LDMSVVVGKW YVPFLFVKEG DIIDQVKISM YYNMTLQQRW EEVFFYENVR NEDCIQVVVD VNLEAEVIKV EGQKINIGTT YLDAKGIVWF
301: QVFDHEGKNK KIGLRSMIVE RMESEEENFG WKKIDGNLLT VKKLDRFECG SSHWKSYKCY VLVESFELNR MDGSLVLTYE FRHADKLMRT IQY

Best Arabidopsis Sequence Match ( AT1G13550.1 )
(BLAST)

001: MYVTRRLSEY RKNPSELKKP PPEGPNSGVL VIQDEESLTT CCFGLCNEIF LRGLPFPQNA ALTVRRDDGG QNNTVHRDPV VFIPVLGQPL SSNRYYTYER
101: CGYYSRESST STEKEVERVT CCFCIRFNHV HMYKKPQPDP YDIHQQVVIT TTSSPSRCYY FAKPVAPNAL LPAFLMRQGW TIENSTSTLQ DFGLIDDAKG
201: LNLELRSKLP GLDISVVVGK WYVPFIFVKE GDIIDQVKIS MYYNMTLHQR WEEVFFYENV HNEDCVEVVV DVDLELQVIN IEGQKVSIET TNVDAKGIVW
301: FQVKDKKIGL RSVVVERMES EEESFGWKKV DGNRVTVKRL DRFEGGSSHW KSYKCYVLVE RFELKRMDES LVLTYEFRHA DKLRTIQY

Arabidopsis Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q3EDD3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.