Factsheet for VIT_01s0011g02330.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00770.t01
VIT_12s0142g00610.t01
VIT_16s0022g00510.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G13520.1	VIT_06s0080g00770.t01	AT2G42790.1	21798944
AT1G13520.1	VIT_12s0142g00610.t01	AT2G42790.1	21798944
AT1G13520.1	VIT_16s0022g00510.t01	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g02320.t01	Wine grape	cytosol	84.56	85.42
KRH71102	Soybean	cytosol	53.67	55.5
PGSC0003DMT400019462	Potato	cytosol	53.92	53.92
KRH71091	Soybean	cytosol	52.66	52.53
Solyc05g010470.2.1	Tomato	cytosol	41.27	51.58
PGSC0003DMT400019458	Potato	cytosol	44.05	51.48
Solyc05g010460.2.1	Tomato	cytosol, nucleus, peroxisome	50.89	50.63
KRH63067	Soybean	cytosol, golgi, mitochondrion, nucleus	43.04	50.45
PGSC0003DMT400059315	Potato	cytosol	34.94	49.46
Bra026901.1-P	Field mustard	cytosol	43.54	45.26
GSMUA_Achr5P27350_001	Banana	mitochondrion	44.05	44.85
GSMUA_Achr5P27360_001	Banana	mitochondrion	43.29	44.53
CDY26654	Canola	cytosol	42.78	44.47
CDY16094	Canola	cytosol	42.78	44.47
CDY26653	Canola	cytosol	39.75	44.1
Bra019719.1-P	Field mustard	cytosol	42.28	43.83
Bra026902.1-P	Field mustard	cytosol	42.03	43.68
CDX98103	Canola	cytosol	40.76	43.51
AT1G13530.1	Thale cress	cytosol	42.28	43.38
CDY50165	Canola	cytosol	41.77	43.08
GSMUA_Achr3P06220_001	Banana	cytosol	41.77	43.08
CDY30029	Canola	cytosol	41.52	43.04
AT1G13470.1	Thale cress	cytosol	41.27	43.01
CDY21100	Canola	cytosol	42.03	43.01
Bra016728.1-P	Field mustard	cytosol	41.77	42.75
AT1G13490.2	Thale cress	cytosol	41.27	42.67
AT1G13510.1	Thale cress	cytosol	41.01	42.63
AT1G13540.1	Thale cress	cytosol	40.76	42.26
AT1G13520.1	Thale cress	cytosol	41.27	42.12
Bra016727.1-P	Field mustard	cytosol	41.27	42.01
AT1G13500.1	Thale cress	cytosol	41.01	41.97
CDY50164	Canola	cytosol	41.01	41.75
CDY21099	Canola	cytosol	40.51	41.67
GSMUA_Achr9P18410_001	Banana	cytosol	40.25	41.62
CDY21101	Canola	cytosol, mitochondrion	40.76	41.49
AT1G13550.1	Thale cress	cytosol	40.25	40.98
CDY16092	Canola	cytosol	29.37	40.85
AT1G13480.1	Thale cress	nucleus	39.75	40.57
Os08t0413100-00	Rice	cytosol, plasma membrane	41.01	39.04
CDY50167	Canola	cytosol	37.97	38.76
Os08t0413500-00	Rice	cytosol, plasma membrane	39.24	38.08
CDY16095	Canola	cytosol	37.72	37.91
Os08t0413200-00	Rice	cytosol	40.25	37.77
Bra026900.1-P	Field mustard	cytosol	36.96	37.24
CDY26655	Canola	cytosol	36.96	37.24
Zm00001d050302_P001	Maize	cytosol, plastid	35.19	37.07
Os08t0412700-01	Rice	cytosol, plasma membrane	34.43	35.98
OQU80420	Sorghum	cytosol	32.91	35.04
EES09009	Sorghum	cytosol	38.73	34.54
Os08t0412800-01	Rice	plasma membrane	33.16	34.03
CDY16093	Canola	cytosol	29.62	34.01
TraesCS4A01G113900.1	Wheat	cytosol	33.42	33.67
TraesCS7D01G441700.1	Wheat	cytosol	37.97	32.89
TraesCS4B01G190200.1	Wheat	cytosol	32.91	32.83
TraesCS4D01G191600.1	Wheat	cytosol	32.66	32.82

Protein Annotations

ArrayExpress:VIT_01s0011g02330	EMBL:FN595752	EnsemblPlants:VIT_01s0011g02330.t01	EnsemblPlantsGene:VIT_01s0011g02330	EntrezGene:100261208	EntrezGene:LOC100261208
InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF2	PFAM:PF06880	ProteinID:CBI27122	ProteinID:CBI27122.3
RefSeq:XP_002280073	RefSeq:XP_002280073.1	SEG:seg	unigene:Vvi.24760	UniParc:UPI00015C79C9	UniProt:D7T9F1
wikigene:100261208	wikigene:LOC100261208	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1:+:2096891..2101462

Molecular Weight (calculated)

44964.2 Da

IEP (calculated)

6.623

GRAVY (calculated)

-0.522

Length

395 amino acids

Sequence
(BLAST)

001: MYVTRPLSLY RKSPDALSLP PPEGPNSGYL VLQDEESETT SCFGLCKERD IRDLPFPQDK NLTVRYSTVV AGDISLRRHT NFYEVFFIPV LNQPLSLNRY
101: YAIKPHGRHK GEAYASSRAE DMGTCCFCDV VDDVKPRPLD PQDIYHQFEV SLVEGTCTPK GSFIAKSIAP DGLPPYFLRR RGWKLSTSTP PNFKLGEAAG
201: LDPSLRARLP DFNFPLHSKS SEPVVVGKWY CPFMFVKEGE LKDRVRRSVY YEMTLEQKWE QIFACENNYN EGNNTVAVDV VVQGEVVAIP QGEAVQDERN
301: EDDGVRWFRS SSGAGVGLRL EIIERMKWEQ VRAGWDGEKR KEARVERAEE YGGSGGWRKF GCYALVETFV LNRMDGSLVL SCGFKHTHQI KSRWE

Best Arabidopsis Sequence Match ( AT1G61600.1 )
(BLAST)

001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETE DTFCFGMCTR TKIEKLPLPQ DKILSVVHLD SSGNRETSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E

Arabidopsis Description

DUF1262 family protein (DUF1262) [Source:UniProtKB/TrEMBL;Acc:Q9SY90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.