Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY21100 | Canola | cytosol | 88.51 | 87.82 |
| CDY21099 | Canola | cytosol | 84.07 | 83.85 |
| CDY50167 | Canola | cytosol | 81.98 | 81.14 |
| AT1G13520.1 | Thale cress | cytosol | 79.11 | 78.29 |
| CDY26654 | Canola | cytosol | 69.97 | 70.53 |
| CDY16094 | Canola | cytosol | 69.71 | 70.26 |
| CDY26653 | Canola | cytosol | 62.4 | 67.13 |
| CDY30029 | Canola | cytosol | 65.27 | 65.62 |
| CDX98103 | Canola | cytosol | 62.66 | 64.86 |
| CDY16092 | Canola | cytosol | 46.74 | 63.03 |
| CDY50164 | Canola | cytosol | 59.27 | 58.51 |
| CDY21101 | Canola | cytosol, mitochondrion | 58.49 | 57.73 |
| CDY16095 | Canola | cytosol | 55.09 | 53.69 |
| CDY26655 | Canola | cytosol | 54.57 | 53.32 |
| CDY16093 | Canola | cytosol | 44.91 | 50.0 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 45.43 | 44.5 |
| PGSC0003DMT400019462 | Potato | cytosol | 45.69 | 44.3 |
| KRH71102 | Soybean | cytosol | 43.6 | 43.72 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 43.08 | 41.77 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 43.08 | 41.56 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 36.55 | 41.54 |
| PGSC0003DMT400019458 | Potato | cytosol | 36.55 | 41.42 |
| KRH71091 | Soybean | cytosol | 42.82 | 41.41 |
| Solyc05g010470.2.1 | Tomato | cytosol | 32.9 | 39.87 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 38.12 | 38.02 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 37.86 | 37.86 |
| PGSC0003DMT400059315 | Potato | cytosol | 27.42 | 37.63 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 37.86 | 37.37 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 39.43 | 37.1 |
| Os08t0413200-00 | Rice | cytosol | 40.21 | 36.58 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 35.25 | 36.0 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 35.77 | 35.86 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 38.64 | 35.66 |
| CDY15029 | Canola | cytosol, mitochondrion | 39.16 | 35.38 |
| OQU80420 | Sorghum | cytosol | 34.2 | 35.31 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 34.2 | 34.66 |
| CDY48822 | Canola | cytosol | 18.28 | 33.33 |
| EES09009 | Sorghum | cytosol | 38.38 | 33.18 |
| Os08t0412800-01 | Rice | plasma membrane | 32.9 | 32.73 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 33.42 | 32.57 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 38.38 | 32.24 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 33.16 | 32.07 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 32.64 | 31.89 |
| CDY26357 | Canola | mitochondrion | 39.16 | 31.85 |
| CDY47587 | Canola | nucleus | 14.88 | 31.15 |
Protein Annotations
| EnsemblPlants:CDY50165 | EnsemblPlantsGene:GSBRNA2T00096082001 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PFAM:PF06880 |
| ProteinID:CDY50165 | ProteinID:CDY50165.1 | SEG:seg | UniParc:UPI0004EC530A | UniProt:A0A078IGY0 | MapMan:35.2 |
Description
BnaC08g15940DBnaC08g15940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IGY0]
Coordinates
chrLK032886:+:15486..17105
Molecular Weight (calculated)
44011.8 Da
IEP (calculated)
7.762
GRAVY (calculated)
-0.631
Length
383 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRHLSEY QRNLTQSLPE GPNSGVLVIQ DEESRPTCCF GSCYDGELRG LPFPQNAKLT VTYRTGTGKN RRSYHDPVLF IPVPGQPLSL NRYYVIKRRG
101: KHSGGASASA TEEDRVPCCF CFSYIPEARP QEPDPYDIYQ QFEIHQRRAL SRYNTATSVA PNGIPPKFLR RKYWTVEYSN SQDFGLIDDA KGINANLRPE
201: LPKDVNTSVV VGKWYVPFIF VKEGDAKGQI KTSTYYSMTL KQRWEEVYSS ENVSEESEVV VDVEVETEVV KLDGEVTNLR ETRTDGVVWF SVLRDERQDK
301: KIGLGSVVVE GIKWEEERFG WLNKGDGVRS SIKRSERFEG GSPHWKSYKC YVLVESFELK RTDGSLVLTY EFRHVDKLKS RWV
101: KHSGGASASA TEEDRVPCCF CFSYIPEARP QEPDPYDIYQ QFEIHQRRAL SRYNTATSVA PNGIPPKFLR RKYWTVEYSN SQDFGLIDDA KGINANLRPE
201: LPKDVNTSVV VGKWYVPFIF VKEGDAKGQI KTSTYYSMTL KQRWEEVYSS ENVSEESEVV VDVEVETEVV KLDGEVTNLR ETRTDGVVWF SVLRDERQDK
301: KIGLGSVVVE GIKWEEERFG WLNKGDGVRS SIKRSERFEG GSPHWKSYKC YVLVESFELK RTDGSLVLTY EFRHVDKLKS RWV
001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
Arabidopsis Description
At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.