Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY26653 | Canola | cytosol | 53.2 | 51.4 |
| AT1G13470.1 | Thale cress | cytosol | 55.81 | 50.66 |
| CDY26654 | Canola | cytosol | 50.58 | 45.79 |
| CDY16094 | Canola | cytosol | 49.71 | 45.0 |
| CDY50165 | Canola | cytosol | 50.0 | 44.91 |
| CDY21100 | Canola | cytosol | 50.29 | 44.82 |
| CDY16092 | Canola | cytosol | 36.05 | 43.66 |
| CDY21099 | Canola | cytosol | 48.26 | 43.23 |
| CDY50167 | Canola | cytosol | 47.67 | 42.38 |
| CDY50164 | Canola | cytosol | 45.35 | 40.21 |
| CDY30029 | Canola | cytosol | 44.19 | 39.9 |
| CDY21101 | Canola | cytosol, mitochondrion | 44.77 | 39.69 |
| CDX98103 | Canola | cytosol | 42.44 | 39.46 |
| CDY26655 | Canola | cytosol | 41.57 | 36.48 |
| CDY16095 | Canola | cytosol | 41.57 | 36.39 |
| PGSC0003DMT400019458 | Potato | cytosol | 32.27 | 32.84 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 36.63 | 32.23 |
| PGSC0003DMT400019462 | Potato | cytosol | 34.59 | 30.13 |
| KRH71102 | Soybean | cytosol | 33.14 | 29.84 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 34.01 | 29.62 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 33.72 | 29.22 |
| KRH71091 | Soybean | cytosol | 33.14 | 28.79 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 27.91 | 28.49 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 31.4 | 28.12 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 31.1 | 27.58 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 29.65 | 26.98 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 29.94 | 26.89 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 28.78 | 26.4 |
| CDY15029 | Canola | cytosol, mitochondrion | 31.98 | 25.94 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 28.78 | 25.92 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 29.65 | 25.76 |
| OQU80420 | Sorghum | cytosol | 27.03 | 25.07 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 28.49 | 25.0 |
| Solyc05g010470.2.1 | Tomato | cytosol | 22.97 | 25.0 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 28.2 | 24.68 |
| Os08t0413200-00 | Rice | cytosol | 29.36 | 23.99 |
| Os08t0412800-01 | Rice | plasma membrane | 26.74 | 23.9 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 28.78 | 23.86 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 27.91 | 23.59 |
| CDY26357 | Canola | mitochondrion | 31.4 | 22.93 |
| PGSC0003DMT400059315 | Potato | cytosol | 17.73 | 21.86 |
| CDY48822 | Canola | cytosol | 13.08 | 21.43 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 28.2 | 21.27 |
| EES09009 | Sorghum | cytosol | 26.16 | 20.32 |
| CDY47587 | Canola | nucleus | 9.3 | 17.49 |
Protein Annotations
| EnsemblPlants:CDY16093 | EnsemblPlantsGene:GSBRNA2T00090506001 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PFAM:PF06880 |
| ProteinID:CDY16093 | ProteinID:CDY16093.1 | SEG:seg | UniParc:UPI0004EE59C5 | UniProt:A0A078FUN2 | MapMan:35.2 |
Description
BnaC08g40300DBnaC08g40300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUN2]
Coordinates
chrLK032060:-:566533..569112
Molecular Weight (calculated)
39744.4 Da
IEP (calculated)
7.426
GRAVY (calculated)
-0.518
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTRTLSDY RTNRKAPEGR NSGVLIIQDK ESKPTCCLGS CYAPGLKGLP FPQNVKLTVK YNITVNSVTT TYRDPVAFIP VLDLMLRSNC YYAIKRSGKH
101: SGESSANATE EDRDKVPFCF CHRHVPEAEP QHSDSYDIYQ KIEIYPPKSL SRSYFATSAG IGWVPPELLE KKYVPFIFVN ESNANDHLKA TYYPMSLYQR
201: WEEVYCCENA YKDNREVVVT VQVEPLVVKL EGHETVEDKR GSSDIENMVV WFEVANKRLG LKIAVIERMK MEELNFGWGS DPQETMIERS NRFNGGDSNW
301: KSYRLYVLVE SFVLKRRDMY QMHLQVPDVP DACTRCTFKC QMHH
101: SGESSANATE EDRDKVPFCF CHRHVPEAEP QHSDSYDIYQ KIEIYPPKSL SRSYFATSAG IGWVPPELLE KKYVPFIFVN ESNANDHLKA TYYPMSLYQR
201: WEEVYCCENA YKDNREVVVT VQVEPLVVKL EGHETVEDKR GSSDIENMVV WFEVANKRLG LKIAVIERMK MEELNFGWGS DPQETMIERS NRFNGGDSNW
301: KSYRLYVLVE SFVLKRRDMY QMHLQVPDVP DACTRCTFKC QMHH
001: MYVTRRLSEY QRNRSELPES PNSGVLIIQD EESRPTCCFG SCYRATLKGL PFPQNANLIV SESRIFLNQT ITYIDPVVFI PVLDQPLSSN RYYVIKRGGK
101: HSGKASANAK EEDRVPCCFC FSYVPEAKPQ EADPNDIYQQ FQIHQKRSSS RYYTATSVAP NGKPPEFLKR KYWNAEYSTS EDFGLKDDAK GIYTEIRSEL
201: PSDFNTSVVV GKWYVPFIFV KEGNAKDQLK SSAYYSMILL QRWEEVYSCE NAYNENREVV VDVEVEPEVV KLEGQEIGKN TKRVDENGVF WFAVAEKRIG
301: LRSVVMERMK WEEERFGWKI EPQRAVVKKS ERFNGGGSNW KSYRCYVLVE SFELRRKDKS LVLTFEFKHV DKLRTKWES
101: HSGKASANAK EEDRVPCCFC FSYVPEAKPQ EADPNDIYQQ FQIHQKRSSS RYYTATSVAP NGKPPEFLKR KYWNAEYSTS EDFGLKDDAK GIYTEIRSEL
201: PSDFNTSVVV GKWYVPFIFV KEGNAKDQLK SSAYYSMILL QRWEEVYSCE NAYNENREVV VDVEVEPEVV KLEGQEIGKN TKRVDENGVF WFAVAEKRIG
301: LRSVVMERMK WEEERFGWKI EPQRAVVKKS ERFNGGGSNW KSYRCYVLVE SFELRRKDKS LVLTFEFKHV DKLRTKWES
Arabidopsis Description
Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13470]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.