CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra038594.1-P	Field mustard	nucleus	98.3	98.3
CDY15029	Canola	cytosol, mitochondrion	85.56	95.05
AT1G61600.1	Thale cress	cytosol	74.52	83.37
CDY48822	Canola	cytosol	30.36	68.1
CDY47587	Canola	nucleus	25.48	65.57
KRG93807	Soybean	mitochondrion, nucleus	39.49	45.81
Solyc02g089650.2.1	Tomato	mitochondrion	35.67	42.21
PGSC0003DMT400026205	Potato	mitochondrion	35.67	42.21
CDY16094	Canola	cytosol	33.33	41.32
CDY26654	Canola	cytosol	33.12	41.05
CDY21099	Canola	cytosol	32.7	40.1
CDY26653	Canola	cytosol	30.15	39.89
CDY21100	Canola	cytosol	32.27	39.38
CDY50165	Canola	cytosol	31.85	39.16
CDX98103	Canola	cytosol	30.36	38.65
GSMUA_Achr5P27360_001	Banana	mitochondrion	31.42	38.54
GSMUA_Achr9P18410_001	Banana	cytosol	31.0	38.22
CDY21101	Canola	cytosol, mitochondrion	31.42	38.14
CDY50164	Canola	cytosol	31.42	38.14
CDY30029	Canola	cytosol	30.79	38.06
GSMUA_Achr5P27350_001	Banana	mitochondrion	31.21	37.89
CDY50167	Canola	cytosol	31.0	37.73
GSMUA_Achr3P06220_001	Banana	cytosol	30.57	37.6
CDY16092	Canola	cytosol	22.51	37.32
CDY26655	Canola	cytosol	29.51	35.46
CDY16095	Canola	cytosol	29.51	35.37
Os08t0413500-00	Rice	cytosol, plasma membrane	29.94	34.64
Os08t0413100-00	Rice	cytosol, plasma membrane	29.94	33.98
Os08t0413200-00	Rice	cytosol	30.15	33.73
Zm00001d050302_P001	Maize	cytosol, plastid	26.33	33.07
OQU80420	Sorghum	cytosol	25.48	32.34
EES09009	Sorghum	cytosol	30.36	32.28
CDY16093	Canola	cytosol	22.93	31.4
Os08t0412700-01	Rice	cytosol, plasma membrane	24.42	30.42
TraesCS4A01G113900.1	Wheat	cytosol	25.27	30.36
TraesCS7D01G441700.1	Wheat	cytosol	29.3	30.26
Os08t0412800-01	Rice	plasma membrane	24.42	29.87
TraesCS4B01G190200.1	Wheat	cytosol	24.84	29.55
TraesCS4D01G191600.1	Wheat	cytosol	24.63	29.52

Protein Annotations

EnsemblPlants:CDY26357	EnsemblPlantsGene:GSBRNA2T00035112001	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF3	PFAM:PF06880
ProteinID:CDY26357	ProteinID:CDY26357.1	SEG:seg	UniParc:UPI0004EE31BD	UniProt:A0A078GMB8	MapMan:35.2

Description

BnaA03g60330DBnaA03g60330D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMB8]

Coordinates

chrLK032188:+:570324..571985

Molecular Weight (calculated)

54359.1 Da

IEP (calculated)

9.456

GRAVY (calculated)

-0.625

Length

471 amino acids

Sequence
(BLAST)

001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETD DTFCFGMCKR TKIEKLPFPQ DKILSVVHTD SSGNRDTSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV CVCSKEIEKG LCCFPDILHE KKPKPLDPRN IYQTVKINRH HDKTFFAKSM APDGTPPSFL KKKGWELRAS RSLHPRRPRE ALGLDDELRA
201: RLPEFGFSVS TIRSGSVIVG EWYCPFMFVK ENCSVSYQMK KSMFYRMTLS QYWERIYHCE NNNLGDTNDE NNDEDEGLVR VEANVLREAN YVKGIEAVKE
301: EKEGNGGFYW YIPVQGLRGR GERRRKTCSG SAVGLSFVVV ERMRRVMEEG GWVEGGRKVV RVERDEQIGV SRRDFRDLNG NNNREWRRFG CYVLVESFGL
401: RRADGVLLVK CLFRHTQRLR SQPKNDYSHI LLSTATSAAA SRKITLAENK IVMEEIETAA RNDRWCYPRL L

Best Arabidopsis Sequence Match ( AT1G61600.1 )
(BLAST)

001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETE DTFCFGMCTR TKIEKLPLPQ DKILSVVHLD SSGNRETSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E

Arabidopsis Description

DUF1262 family protein (DUF1262) [Source:UniProtKB/TrEMBL;Acc:Q9SY90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.