CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26357	Canola	mitochondrion	95.05	85.56
AT1G61600.1	Thale cress	cytosol	83.96	84.56
CDY48822	Canola	cytosol	33.25	67.14
CDY47587	Canola	nucleus	27.83	64.48
KRG93807	Soybean	mitochondrion, nucleus	45.28	47.29
PGSC0003DMT400026205	Potato	mitochondrion	40.09	42.71
Solyc02g089650.2.1	Tomato	mitochondrion	39.62	42.21
CDY16094	Canola	cytosol	37.03	41.32
CDY26654	Canola	cytosol	37.03	41.32
CDY21099	Canola	cytosol	36.79	40.62
CDY26653	Canola	cytosol	33.96	40.45
CDY21100	Canola	cytosol	36.32	39.9
GSMUA_Achr5P27360_001	Banana	mitochondrion	35.61	39.32
CDX98103	Canola	cytosol	34.2	39.19
CDY50165	Canola	cytosol	35.38	39.16
CDY50164	Canola	cytosol	35.38	38.66
CDY21101	Canola	cytosol, mitochondrion	35.38	38.66
GSMUA_Achr5P27350_001	Banana	mitochondrion	35.38	38.66
GSMUA_Achr3P06220_001	Banana	cytosol	34.67	38.38
CDY30029	Canola	cytosol	34.43	38.32
CDY50167	Canola	cytosol	34.91	38.24
GSMUA_Achr9P18410_001	Banana	cytosol	34.43	38.22
CDY16092	Canola	cytosol	25.47	38.03
CDY26655	Canola	cytosol	33.73	36.48
CDY16095	Canola	cytosol	33.49	36.13
Os08t0413500-00	Rice	cytosol, plasma membrane	34.43	35.87
Os08t0413100-00	Rice	cytosol, plasma membrane	34.43	35.18
Os08t0413200-00	Rice	cytosol	34.91	35.15
Zm00001d050302_P001	Maize	cytosol, plastid	29.72	33.6
OQU80420	Sorghum	cytosol	28.77	32.88
EES09009	Sorghum	cytosol	33.96	32.51
CDY16093	Canola	cytosol	25.94	31.98
Os08t0412700-01	Rice	cytosol, plasma membrane	27.83	31.22
TraesCS7D01G441700.1	Wheat	cytosol	33.25	30.92
TraesCS4A01G113900.1	Wheat	cytosol	28.3	30.61
Os08t0412800-01	Rice	plasma membrane	27.59	30.39
TraesCS4B01G190200.1	Wheat	cytosol	27.83	29.8
TraesCS4D01G191600.1	Wheat	cytosol	27.59	29.77

Protein Annotations

EnsemblPlants:CDY15029	EnsemblPlantsGene:GSBRNA2T00085118001	InterPro:DUF1262	PANTHER:PTHR31050	PANTHER:PTHR31050:SF3	PFAM:PF06880
ProteinID:CDY15029	ProteinID:CDY15029.1	SEG:seg	UniParc:UPI0004EE730E	UniProt:A0A078FQ95	MapMan:35.2

Description

BnaCnng04320DBnaCnng04320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQ95]

Coordinates

chrLK032050:+:631960..633380

Molecular Weight (calculated)

49009.6 Da

IEP (calculated)

9.480

GRAVY (calculated)

-0.662

Length

424 amino acids

Sequence
(BLAST)

001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETD DTFCFGMCKR TKIEKLPFPQ DKILSVVHTD SSGNRDTSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV CVCSKEIEKG LCCFPDILYE KKPKPLDPRN IYQTVKINRH HDKTFFAKSV APDGTPPSFL KKKGWELRAS RSLHPRRPRE ALGLDDELRA
201: RLPEFGFSVS TIRSGSVIVG EWYCPFMFVK ENGSVSHQMK KSMFYRMTLS QYWERIYHCE NNNLDDTNDE NNDEDEGLVR VEANVLREAN YVKGIEAVKG
301: EKEGRGGFYW YIPVQGLRGP GERRRKTGSG SAVGLSFVVV ERMRRVMEEG GWVEGGRKVV RVERDEQIGV SRRDFRDMNG NNDREWRRFG CYVLVESFGL
401: RRADGVLLVK CLFRHTQRLR CKWE

Best Arabidopsis Sequence Match ( AT1G61600.1 )
(BLAST)

001: MYVTRTLSQF RKYQKTLSEE SPEGPFSGVL VITDEEAETE DTFCFGMCTR TKIEKLPLPQ DKILSVVHLD SSGNRETSVK KVLFIPALDQ PLSSNRYYVV
101: HARGRHKGKV SVCSREIEKG VCCFPDILHD KKPKPLDPRN IYQTVKINRH HDRTFYAKSV APDGTPPTFL KKKGWELRTS RSLHPRRPRE ALGLDEELRA
201: RLPAFGFPVS TIRSGSVIVG EWYCPFMFVK ENCSVSQQMR KSMFYRITLS QYWERIYHCG NNDLDENNDE NEEEVVRVEA NVVREANYVK GMEAVKGEKE
301: GHGGFYWYRQ VQGPRGPGER RRKTGLRSPV GLSFVVVERM RRVMEEGGWV GGGRKVVRVE RDEPIRVCRR DGRNMNGNND RNWRRFGCYV LVESFGLRRA
401: DGVLLVKCVF RHTNRLRCNW E

Arabidopsis Description

DUF1262 family protein (DUF1262) [Source:UniProtKB/TrEMBL;Acc:Q9SY90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.