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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • endoplasmic reticulum 1
  • cytosol 3
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, endoplasmic reticulum, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:endoplasmic reticulum
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 plasma membrane: 27800704
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os02t0232400-01
Os02t0758000-01
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13520.1 Os02t0232400-01 AT2G42790.1 21798944
AT1G13520.1 Os02t0758000-01 AT4G25200.1 21798944
AT1G13520.1 Os06t0219500-00 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Os08t0413200-00 Rice cytosol 76.14 75.06
Os08t0413500-00 Rice cytosol, plasma membrane 68.67 70.02
EES09009 Sorghum cytosol 54.7 51.24
TraesCS7D01G441700.1 Wheat cytosol 54.22 49.34
GSMUA_Achr5P27350_001 Banana mitochondrion 42.17 45.1
GSMUA_Achr5P27360_001 Banana mitochondrion 40.96 44.27
GSMUA_Achr3P06220_001 Banana cytosol 38.8 42.04
VIT_01s0011g02320.t01 Wine grape cytosol 38.8 41.18
KRH71102 Soybean cytosol 37.83 41.1
VIT_01s0011g02330.t01 Wine grape cytosol, mitochondrion 39.04 41.01
GSMUA_Achr9P18410_001 Banana cytosol 37.11 40.31
Os08t0412800-01 Rice plasma membrane 36.87 39.74
CDX98103 Canola cytosol 35.42 39.73
Bra019719.1-P Field mustard cytosol 36.39 39.63
CDY30029 Canola cytosol 36.14 39.37
AT1G13530.1 Thale cress cytosol 36.39 39.22
KRH71091 Soybean cytosol 37.11 38.89
Os08t0412700-01 Rice cytosol, plasma membrane 35.42 38.89
CDY50165 Canola cytosol 35.66 38.64
CDY26653 Canola cytosol 33.01 38.48
Bra026902.1-P Field mustard cytosol 35.18 38.42
CDY21100 Canola cytosol 35.66 38.34
CDY50167 Canola cytosol 35.66 38.24
CDY16092 Canola cytosol 26.02 38.03
Solyc05g010470.2.1 Tomato cytosol 28.92 37.97
KRG93807 Soybean mitochondrion, nucleus 36.87 37.68
AT1G13540.1 Thale cress cytosol 34.46 37.53
CDY21099 Canola cytosol 34.7 37.5
PGSC0003DMT400019462 Potato cytosol 35.66 37.47
KRH63067 Soybean cytosol, golgi, mitochondrion, nucleus 30.36 37.39
AT1G13500.1 Thale cress cytosol 34.46 37.05
AT1G13490.2 Thale cress cytosol 33.98 36.91
Bra026901.1-P Field mustard cytosol 33.73 36.84
CDY26654 Canola cytosol 33.73 36.84
Bra016728.1-P Field mustard cytosol 34.22 36.79
AT1G13520.1 Thale cress cytosol 34.22 36.69
AT1G13480.1 Thale cress nucleus 33.98 36.43
AT1G13470.1 Thale cress cytosol 33.25 36.41
PGSC0003DMT400059315 Potato cytosol 24.34 36.2
CDY16094 Canola cytosol 32.77 35.79
Solyc05g010460.2.1 Tomato cytosol, nucleus, peroxisome 34.22 35.77
PGSC0003DMT400026205 Potato mitochondrion 33.98 35.43
CDY50164 Canola cytosol 33.01 35.31
Bra016727.1-P Field mustard cytosol 33.01 35.31
AT1G13510.1 Thale cress cytosol 32.29 35.26
PGSC0003DMT400019458 Potato cytosol 28.67 35.21
CDY21101 Canola cytosol, mitochondrion 32.77 35.05
AT1G61600.1 Thale cress cytosol 35.42 34.92
AT1G13550.1 Thale cress cytosol 32.53 34.79
Solyc02g089650.2.1 Tomato mitochondrion 33.25 34.67
CDY15029 Canola cytosol, mitochondrion 35.18 34.43
CDY16095 Canola cytosol 31.08 32.82
Bra026900.1-P Field mustard cytosol 30.6 32.4
CDY26655 Canola cytosol 30.6 32.4
Bra038594.1-P Field mustard nucleus 33.98 29.94
CDY26357 Canola mitochondrion 33.98 29.94
CDY16093 Canola cytosol 23.86 28.78
CDY48822 Canola cytosol 14.46 28.57
CDY47587 Canola nucleus 12.53 28.42
Protein Annotations
EnsemblPlants:Os08t0413100-00EnsemblPlantsGene:Os08g0413100EntrezGene:4345564InterPro:DUF1262PANTHER:PTHR31050PANTHER:PTHR31050:SF3
PFAM:PF06880ProteinID:BAC99699.1ProteinID:BAT05418.1RefSeq:XP_015649076.1SEG:segUniParc:UPI00001D8DC4
UniProt:Q6Z561MapMan:35.2::::
Description
Protein of unknown function DUF1262 domain containing protein. (Os08t0413100-00)
Coordinates
chr8:-:19762998..19764245
Molecular Weight (calculated)
46402.8 Da
IEP (calculated)
7.432
GRAVY (calculated)
-0.496
Length
415 amino acids
Sequence
(BLAST)
001: MYVTRPMSRY QDDPDAAAEP PPEDPGSGFL VVEDEVAVAR ATRWWGLWAD RQVYGLPFPQ SRQLEVEYTA SIGAGRNRLT YTHRDDVVFV PVVGQPLSSG
101: RYYAARATGR HAGKVSACSR EEDMVTCCGL WSLVNDVPPR PFDRGDVYQQ VEVLRLPPRG RGFTAVAVAP DGIPPGYLRR EAWKVHTSAS TSYDLADAAH
201: GTDWPLRRRM PDLDSFDVGV GGSPPVVVGR WYCPFMFIND GGEQRLKDQV KRCMFYEMTL EQRWEEIYTR DNAHRGRRST SSKDNEVEVS ATVRRSTALL
301: GGTDAVRGGG PQMVDGVMWF RPAAPPTNSG TAGGVGLDMV VWEKMKWELE RGGWVAGNGD VESIERGERR EARPGQWDKF GCYLLLESFV LRRMDGSVAL
401: TCGFRHTGKI RTKWV
Best Arabidopsis Sequence Match ( AT1G13480.1 )
(BLAST)
001: MYVTRRLSEY QKKPSELKLL PPEGPNSGIM VIQDEESQAT CCFGSCYEGR LKGLPFPQNV KLNAAYTSGG GEHQTTHLTP VVFIPVLDQP LSSNLYYVLQ
101: RRGKHTGKAS ASATEEERVS SCFCFSYIPD AKPQEADPYD IYQQFEIHQR RSSSRYYSAT SVASDGVPPN YLKRKDWWVS YSTSHDFGLR DDAKGINTKL
201: RLDSELTSLG KSIEIGKWYV PFIFVMEGDV KDQMNKSTFY SVTLQQRWEE VFFCENIGNE HFEVVVDVDV ETESVKLEGQ ETNLREDSGD GVVWFSVLRD
301: EKDDKKIGLG SVVVERMKWE EERFGWLNEA GERSNIKRSE RFEGGSSHWK SYRCYVLIES FELTRMDGSL VLTYEFRHVD KLKSKWD
Arabidopsis Description
At1g13480 [Source:UniProtKB/TrEMBL;Acc:Q56Y29]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.