Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G13490.2 | Thale cress | cytosol | 81.61 | 82.46 |
| AT1G13530.1 | Thale cress | cytosol | 80.83 | 81.04 |
| CDY30029 | Canola | cytosol | 77.46 | 78.48 |
| CDX98103 | Canola | cytosol | 74.35 | 77.57 |
| Bra019719.1-P | Field mustard | cytosol | 76.17 | 77.17 |
| AT1G13480.1 | Thale cress | nucleus | 63.21 | 63.05 |
| AT1G13520.1 | Thale cress | cytosol | 62.18 | 62.02 |
| AT1G13470.1 | Thale cress | cytosol | 60.88 | 62.01 |
| AT1G13540.1 | Thale cress | cytosol | 56.48 | 57.22 |
| AT1G13510.1 | Thale cress | cytosol | 55.18 | 56.05 |
| AT1G13550.1 | Thale cress | cytosol | 53.89 | 53.61 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 44.04 | 43.48 |
| KRH71091 | Soybean | cytosol | 44.04 | 42.93 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 37.05 | 42.43 |
| PGSC0003DMT400019462 | Potato | cytosol | 43.26 | 42.28 |
| KRH71102 | Soybean | cytosol | 41.45 | 41.88 |
| PGSC0003DMT400019458 | Potato | cytosol | 36.53 | 41.72 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 41.97 | 41.01 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 41.71 | 40.55 |
| Solyc05g010470.2.1 | Tomato | cytosol | 33.16 | 40.51 |
| PGSC0003DMT400059315 | Potato | cytosol | 28.76 | 39.78 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 37.56 | 37.76 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 37.56 | 37.37 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 36.27 | 36.55 |
| Os08t0413500-00 | Rice | cytosol, plasma membrane | 37.31 | 35.38 |
| Os08t0413200-00 | Rice | cytosol | 38.34 | 35.15 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 34.72 | 35.08 |
| Os08t0413100-00 | Rice | cytosol, plasma membrane | 37.05 | 34.46 |
| AT1G61600.1 | Thale cress | cytosol | 36.27 | 33.25 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 31.61 | 32.53 |
| OQU80420 | Sorghum | cytosol | 31.09 | 32.34 |
| EES09009 | Sorghum | cytosol | 36.79 | 32.05 |
| Os08t0412800-01 | Rice | plasma membrane | 31.87 | 31.95 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 31.09 | 31.75 |
| TraesCS7D01G441700.1 | Wheat | cytosol | 36.53 | 30.92 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 30.31 | 29.77 |
| TraesCS4A01G113900.1 | Wheat | cytosol | 30.05 | 29.59 |
| TraesCS4B01G190200.1 | Wheat | cytosol | 30.31 | 29.55 |
Protein Annotations
| ArrayExpress:AT1G13500 | EnsemblPlants:AT1G13500.1 | EnsemblPlantsGene:AT1G13500 | EntrezGene:837910 | GO:GO:0005575 | GO:GO:0008150 |
| InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF2 | PFAM:PF06880 | ProteinID:AEE29027.1 | RefSeq:AT1G13500 |
| RefSeq:AT1G13500-TAIR-G | RefSeq:NP_172807.1 | SEG:seg | TAIR:AT1G13500 | TAIR:AT1G13500.1 | Unigene:At.51596 |
| UniParc:UPI0000162D62 | UniProt:F4HQU2 | MapMan:35.2 | : | : | : |
Description
Protein of unknown function (DUF1262) [Source:TAIR;Acc:AT1G13500]
Coordinates
chr1:-:4627789..4629169
Molecular Weight (calculated)
44245.5 Da
IEP (calculated)
5.400
GRAVY (calculated)
-0.409
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MYVTKRLSEY KRNPSELTLL PTEGPNSGVL VIQDEESRPT LKCCFVNSFD WELNGLPFPQ NTRVIVKRQI GTALYLDPVA FIPVLHQPPS SNLYYVIRGS
101: GKHTGEACVS AKEGDRASCC FCFTYIPEAV PRPLDPFDIN QQFEIHQGRS STKKFFATSV ASDGIPPQFL TRKGWSVIFS APEVEDYGLI DDAKGIVDAK
201: LRYELPDLDN SVVVGKWYVP FLFVKEGDAK DQMYKSMYYS MTLQQRFEEV FFCENVGNNK RFEVVVDVEV ETEVVKLEGE RIARETQGVN SDGVVWFNAS
301: GNEKIGLGSV VLERMKWEEE RFGWLNKGYE QRSSIKRTER FEGGGPYWKS YRCYVLVETF ELKRTDGSLV LTYEFKHVDK LKSKWD
101: GKHTGEACVS AKEGDRASCC FCFTYIPEAV PRPLDPFDIN QQFEIHQGRS STKKFFATSV ASDGIPPQFL TRKGWSVIFS APEVEDYGLI DDAKGIVDAK
201: LRYELPDLDN SVVVGKWYVP FLFVKEGDAK DQMYKSMYYS MTLQQRFEEV FFCENVGNNK RFEVVVDVEV ETEVVKLEGE RIARETQGVN SDGVVWFNAS
301: GNEKIGLGSV VLERMKWEEE RFGWLNKGYE QRSSIKRTER FEGGGPYWKS YRCYVLVETF ELKRTDGSLV LTYEFKHVDK LKSKWD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.