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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 3
  • cytosol 4
  • vacuole 1
  • nucleus 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid, vacuole
BaCelLo:plastid
EpiLoc:cytosol
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:cytosol, nucleus, vacuole
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc07g055840.2.1
Solyc08g078700.2.1
Solyc12g011000.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G13520.1 Solyc07g055840.2.1 AT2G42790.1 21798944
AT1G13520.1 Solyc12g011000.1.1 AT2G42790.1 21798944
AT1G13520.1 Solyc08g078700.2.1 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400019462 Potato cytosol 92.41 73.92
Solyc05g010460.2.1 Tomato cytosol, nucleus, peroxisome 81.01 64.48
VIT_01s0011g02320.t01 Wine grape cytosol 53.16 42.97
KRH71102 Soybean cytosol 50.0 41.36
VIT_01s0011g02330.t01 Wine grape cytosol, mitochondrion 51.58 41.27
CDY16092 Canola cytosol 36.08 40.14
Bra016727.1-P Field mustard cytosol 44.62 36.34
KRH71091 Soybean cytosol 45.25 36.11
CDY50164 Canola cytosol 44.3 36.08
AT1G13510.1 Thale cress cytosol 43.35 36.05
CDY21101 Canola cytosol, mitochondrion 43.99 35.82
AT1G13540.1 Thale cress cytosol 42.09 34.91
GSMUA_Achr5P27360_001 Banana mitochondrion 42.09 34.64
CDY26653 Canola cytosol 38.92 34.55
GSMUA_Achr5P27350_001 Banana mitochondrion 42.41 34.54
Bra026902.1-P Field mustard cytosol 41.46 34.47
AT1G13490.2 Thale cress cytosol 41.14 34.03
Bra026901.1-P Field mustard cytosol 40.51 33.68
KRH63067 Soybean cytosol, golgi, mitochondrion, nucleus 35.76 33.53
CDY16094 Canola cytosol 40.19 33.42
AT1G13520.1 Thale cress cytosol 40.82 33.33
AT1G13530.1 Thale cress cytosol 40.51 33.25
CDX98103 Canola cytosol 38.92 33.24
AT1G13500.1 Thale cress cytosol 40.51 33.16
Bra019719.1-P Field mustard cytosol 39.87 33.07
AT1G13470.1 Thale cress cytosol 39.56 32.98
Bra016728.1-P Field mustard cytosol 40.19 32.9
CDY21100 Canola cytosol 40.19 32.9
CDY50165 Canola cytosol 39.87 32.9
CDY21099 Canola cytosol 39.87 32.81
CDY30029 Canola cytosol 39.56 32.81
CDY26654 Canola cytosol 39.24 32.63
GSMUA_Achr3P06220_001 Banana cytosol 39.24 32.38
AT1G13480.1 Thale cress nucleus 39.24 32.04
CDY50167 Canola cytosol 38.61 31.52
AT1G13550.1 Thale cress cytosol 38.29 31.19
GSMUA_Achr9P18410_001 Banana cytosol 37.34 30.89
Os08t0412700-01 Rice cytosol, plasma membrane 36.71 30.69
Zm00001d050302_P001 Maize cytosol, plastid 36.39 30.67
Solyc02g089650.2.1 Tomato mitochondrion 38.61 30.65
TraesCS4A01G113900.1 Wheat cytosol 37.34 30.1
TraesCS4D01G191600.1 Wheat cytosol 37.34 30.03
Os08t0413500-00 Rice cytosol, plasma membrane 38.29 29.73
Os08t0413200-00 Rice cytosol 39.24 29.45
CDY16095 Canola cytosol 36.08 29.01
Os08t0413100-00 Rice cytosol, plasma membrane 37.97 28.92
Bra026900.1-P Field mustard cytosol 35.76 28.83
CDY26655 Canola cytosol 35.76 28.83
TraesCS4B01G190200.1 Wheat cytosol 36.08 28.79
OQU80420 Sorghum cytosol 33.54 28.57
Os08t0412800-01 Rice plasma membrane 34.18 28.05
TraesCS7D01G441700.1 Wheat cytosol 37.66 26.1
EES09009 Sorghum cytosol 36.08 25.73
CDY16093 Canola cytosol 25.0 22.97
Protein Annotations
EnsemblPlants:Solyc05g010470.2.1EnsemblPlantsGene:Solyc05g010470.2InterPro:DUF1262PANTHER:PTHR31050PANTHER:PTHR31050:SF2PFAM:PF06880
UniParc:UPI000276701DUniProt:K4BXM0MapMan:35.2:::
Description
No Description!
Coordinates
chr5:-:4706112..4707923
Molecular Weight (calculated)
36877.8 Da
IEP (calculated)
7.551
GRAVY (calculated)
-0.619
Length
316 amino acids
Sequence
(BLAST)
001: MFIPVLNKPL SSNQYYAIKH HGKRKGQAFT CSTEEDKQTC CFCTCIQDVK PKPLDPEEAY QQFEICLYDT GCNVKGNFCA KSLAPDGFPP YFLRRKGWHL
101: SAETPKNYEL NDDALGLNPE LRQQLPQFNV TSPCKSSEVV VVGKWYCPFA FIKDETELKE QMKRSIFYEM TLEQRWEQFF TCQNDKLNQG NSVLVDVALD
201: TQVVLISGSD NKATWDDRNV VEGVIWFKSY GKDGNEVASL GLRREIVERM KWEQQRGGWQ NQGRIKQVEE NRENSSGWRR FTCYVLVERF VLRRMDTSLV
301: MTYDFKHINK VKSIWE
Best Arabidopsis Sequence Match ( AT1G13540.1 )
(BLAST)
001: MYITRSFSEY RRNPAELTQP PPEGPNSGIL VIQDQHSRTR ATSCFGSWLV VDSSLSGLPL PQNLKLAVTF NIGGDDSTRD PVVFIPVLDK PLSSNCYYAI
101: KRHGKHSGEA SGSAKEDDIV SCCFCSSFVP EAKPKQLDPF DMYQQFKIHQ KEPSSRCYYA TSVAPDGVPP WFLRKKEWTV EYSRFQDFEL RDDAKGLITE
201: LRTELPLLGM STVVGKWYVP FIFVKEREVK DQIKNSMYYS MTLEQRWKEL FSDENDKSEN RDVVVDVEVE TEVVKLEGQM IERGLEANGF VWFGVGDKKI
301: GLGSVVVERM KWEEERFGWT GKGDNERSMT VKRLEKSTDG SLWKHYHCYV LIESFVLKRM DESLVLTYEF THVDKLKTKW D
Arabidopsis Description
At1g13540 [Source:UniProtKB/TrEMBL;Acc:Q6NM24]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.