Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G190200.1 | Wheat | cytosol | 93.11 | 92.17 |
| TraesCS4D01G191600.1 | Wheat | cytosol | 91.58 | 91.35 |
| Zm00001d050302_P001 | Maize | cytosol, plastid | 67.6 | 70.67 |
| OQU80420 | Sorghum | cytosol | 63.78 | 67.39 |
| Os08t0412700-01 | Rice | cytosol, plasma membrane | 64.54 | 66.93 |
| GSMUA_Achr5P27350_001 | Banana | mitochondrion | 45.66 | 46.13 |
| GSMUA_Achr5P27360_001 | Banana | mitochondrion | 44.39 | 45.31 |
| GSMUA_Achr3P06220_001 | Banana | cytosol | 40.56 | 41.51 |
| GSMUA_Achr9P18410_001 | Banana | cytosol | 38.27 | 39.27 |
| Solyc05g010470.2.1 | Tomato | cytosol | 30.1 | 37.34 |
| Solyc05g010460.2.1 | Tomato | cytosol, nucleus, peroxisome | 37.5 | 37.03 |
| PGSC0003DMT400019462 | Potato | cytosol | 36.99 | 36.71 |
| PGSC0003DMT400019458 | Potato | cytosol | 31.63 | 36.69 |
| VIT_01s0011g02320.t01 | Wine grape | cytosol | 35.71 | 35.81 |
| KRH71102 | Soybean | cytosol | 34.69 | 35.6 |
| CDY26653 | Canola | cytosol | 31.38 | 34.55 |
| CDY16094 | Canola | cytosol | 33.16 | 34.21 |
| Bra026901.1-P | Field mustard | cytosol | 32.4 | 33.42 |
| Bra026902.1-P | Field mustard | cytosol | 32.4 | 33.42 |
| CDY26654 | Canola | cytosol | 32.4 | 33.42 |
| VIT_01s0011g02330.t01 | Wine grape | cytosol, mitochondrion | 33.67 | 33.42 |
| CDY16092 | Canola | cytosol | 23.98 | 33.1 |
| AT1G13520.1 | Thale cress | cytosol | 32.65 | 33.07 |
| AT1G13470.1 | Thale cress | cytosol | 31.89 | 32.98 |
| CDY21100 | Canola | cytosol | 32.14 | 32.64 |
| Bra016728.1-P | Field mustard | cytosol | 32.14 | 32.64 |
| CDY50165 | Canola | cytosol | 31.89 | 32.64 |
| AT1G13510.1 | Thale cress | cytosol | 31.38 | 32.37 |
| CDY50167 | Canola | cytosol | 31.89 | 32.3 |
| CDY21099 | Canola | cytosol | 31.63 | 32.29 |
| AT1G13530.1 | Thale cress | cytosol | 31.38 | 31.95 |
| KRH71091 | Soybean | cytosol | 31.89 | 31.57 |
| AT1G13480.1 | Thale cress | nucleus | 31.12 | 31.52 |
| Solyc02g089650.2.1 | Tomato | mitochondrion | 31.89 | 31.41 |
| AT1G13540.1 | Thale cress | cytosol | 30.36 | 31.23 |
| PGSC0003DMT400026205 | Potato | mitochondrion | 31.63 | 31.16 |
| CDX98103 | Canola | cytosol | 29.34 | 31.08 |
| AT1G13490.2 | Thale cress | cytosol | 30.1 | 30.89 |
| PGSC0003DMT400059315 | Potato | cytosol | 21.94 | 30.82 |
| Bra019719.1-P | Field mustard | cytosol | 29.85 | 30.71 |
| CDY50164 | Canola | cytosol | 30.36 | 30.67 |
| AT1G13550.1 | Thale cress | cytosol | 30.1 | 30.41 |
| CDY30029 | Canola | cytosol | 29.34 | 30.18 |
| CDY21101 | Canola | cytosol, mitochondrion | 29.85 | 30.15 |
| AT1G13500.1 | Thale cress | cytosol | 29.59 | 30.05 |
| Bra016727.1-P | Field mustard | cytosol | 29.59 | 29.9 |
| KRG93807 | Soybean | mitochondrion, nucleus | 30.87 | 29.8 |
| CDY48822 | Canola | cytosol | 15.82 | 29.52 |
| CDY16093 | Canola | cytosol | 25.0 | 28.49 |
| CDY47587 | Canola | nucleus | 13.27 | 28.42 |
| CDY15029 | Canola | cytosol, mitochondrion | 30.61 | 28.3 |
| AT1G61600.1 | Thale cress | cytosol | 30.1 | 28.03 |
| KRH63067 | Soybean | cytosol, golgi, mitochondrion, nucleus | 23.98 | 27.89 |
| CDY26655 | Canola | cytosol | 27.55 | 27.55 |
| Bra026900.1-P | Field mustard | cytosol | 27.55 | 27.55 |
| CDY16095 | Canola | cytosol | 27.04 | 26.97 |
| Bra038594.1-P | Field mustard | nucleus | 30.36 | 25.27 |
| CDY26357 | Canola | mitochondrion | 30.36 | 25.27 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G113900.1 | EnsemblPlantsGene:TraesCS4A01G113900 | InterPro:DUF1262 | PANTHER:PTHR31050 | PANTHER:PTHR31050:SF0 | PFAM:PF06880 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:+:138170711..138171889
Molecular Weight (calculated)
43951.7 Da
IEP (calculated)
7.448
GRAVY (calculated)
-0.551
Length
392 amino acids
Sequence
(BLAST)
(BLAST)
001: MQSKLEGHTQ EAENQGAMYA TKPLSLFMSH PEAASRPPPD GRNSGYLVVK GNDDGDDDET CCWGQCGGTR VRDLPFPQDR VLTLRYTEHH GQSSTTYTDS
101: VVFVPVPDQP VASNRYYAVV ASGKRKGLVR TCSREEDMTP CCFCRCINDV KPQPFDPADV YQQIEIVQRR RGRFTAKAVA ADGYPNYLYR KKYWRVYASK
201: PKNRLDLGDA LGLDVAHRSR QLADANLLDV SPAATAVSTA VGKWYCPFYL IKEDGVSPSE QMDRAAFYEV ALEQRWEPVH DTHGGSKLYS RKVLIGGSLE
301: ATQEVSSGAP RHGDGYVWFR AAAGQSVGVC ASVWERMRWE EYRGGWVDEE EEAEKVAGRS VLVERFVVKR MDRTVVVAFD FVHLNKVRGK QA
101: VVFVPVPDQP VASNRYYAVV ASGKRKGLVR TCSREEDMTP CCFCRCINDV KPQPFDPADV YQQIEIVQRR RGRFTAKAVA ADGYPNYLYR KKYWRVYASK
201: PKNRLDLGDA LGLDVAHRSR QLADANLLDV SPAATAVSTA VGKWYCPFYL IKEDGVSPSE QMDRAAFYEV ALEQRWEPVH DTHGGSKLYS RKVLIGGSLE
301: ATQEVSSGAP RHGDGYVWFR AAAGQSVGVC ASVWERMRWE EYRGGWVDEE EEAEKVAGRS VLVERFVVKR MDRTVVVAFD FVHLNKVRGK QA
001: MYVTRHLSEY QRNSSDLTRS LPEGPNSGVL VIQDEESKPT CCFGNCYDGE LKGLPFPQNA KLTVTYRTGT GNDRRSYHDQ VLFIPVLDQP YYSNRYYVIK
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
101: RRGKQSGGAS ASAKEEDRVP CCFCFSYVPE VKPQEADPYD IYQQFEVHQR KPSSGYYTAT SVAPNGIPPE FLKRKYWTVE YSNSQDFGLT DDAKGINTTL
201: RSKLPNDMNT SVVVGKWYVP FIFVKERDAK DQIKSSPYYS MTLKQRWEEV YSCVNVNYNQ KGGEVVVDVD VETQVVKLEG QETISRETSG GGFVWFSVLG
301: DERQDKKIGL GSVVVERMKW EEERFGWLNN GERSNIKRSE RFEGGSSHWK SYRCLVLIES FELKRMDGSL VLTYEFTHVD KLKSKWD
Arabidopsis Description
At1g13520 [Source:UniProtKB/TrEMBL;Acc:Q6NNH1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.