Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS7B01G083300.1 | Wheat | cytosol | 29.71 | 53.38 |
TraesCS7B01G082900.1 | Wheat | plastid | 40.17 | 48.0 |
TraesCS7B01G083100.1 | Wheat | plastid | 42.68 | 47.89 |
TraesCS7A01G236700.1 | Wheat | plastid | 41.84 | 47.17 |
TraesCS7B01G083400.1 | Wheat | plastid | 41.42 | 46.48 |
TraesCS7A01G177700.1 | Wheat | cytosol, plastid | 41.84 | 46.3 |
TraesCS7A01G177500.1 | Wheat | cytosol, plastid | 41.84 | 46.3 |
TraesCS7D01G179100.1 | Wheat | plastid | 41.42 | 46.05 |
HORVU7Hr1G036500.7 | Barley | plastid | 38.91 | 45.59 |
TraesCS7B01G083200.2 | Wheat | plastid | 41.0 | 44.34 |
HORVU7Hr1G036470.3 | Barley | cytosol, nucleus | 41.0 | 40.5 |
TraesCS7A01G177800.1 | Wheat | nucleus | 38.08 | 39.57 |
TraesCS7B01G130900.1 | Wheat | plastid | 26.78 | 39.51 |
TraesCS2B01G531300.1 | Wheat | plastid | 28.87 | 39.2 |
HORVU7Hr1G036570.2 | Barley | cytosol | 35.56 | 38.46 |
HORVU7Hr1G036540.3 | Barley | mitochondrion, nucleus, plastid | 41.0 | 37.98 |
TraesCS7B01G083500.1 | Wheat | mitochondrion | 35.56 | 36.48 |
EER89430 | Sorghum | plastid | 26.78 | 28.19 |
Solyc08g078700.2.1 | Tomato | plastid | 24.69 | 28.1 |
PGSC0003DMT400012249 | Potato | mitochondrion | 24.69 | 27.96 |
TraesCS6B01G346700.1 | Wheat | mitochondrion | 25.1 | 27.91 |
OQU76071 | Sorghum | plastid | 22.18 | 26.24 |
AT4G25200.1 | Thale cress | mitochondrion | 22.59 | 25.71 |
KRH39841 | Soybean | mitochondrion | 15.48 | 25.17 |
Zm00001d044874_P001 | Maize | cytosol, plastid | 21.76 | 25.0 |
CDY00476 | Canola | mitochondrion | 16.74 | 24.84 |
AT5G51440.1 | Thale cress | mitochondrion | 21.76 | 24.76 |
OQU75930 | Sorghum | plastid | 23.01 | 24.66 |
OQU75612 | Sorghum | plastid | 23.01 | 24.66 |
VIT_16s0022g00510.t01 | Wine grape | mitochondrion | 21.34 | 24.52 |
VIT_02s0154g00480.t01 | Wine grape | mitochondrion, plastid | 20.5 | 24.38 |
GSMUA_Achr10P... | Banana | mitochondrion | 21.76 | 24.07 |
KRH23958 | Soybean | mitochondrion | 20.92 | 23.58 |
CDX99920 | Canola | mitochondrion | 15.48 | 23.12 |
CDY38862 | Canola | mitochondrion | 18.83 | 22.96 |
VIT_02s0154g00490.t01 | Wine grape | mitochondrion | 19.25 | 22.89 |
Bra029174.1-P | Field mustard | mitochondrion | 18.41 | 22.34 |
Bra013872.1-P | Field mustard | mitochondrion | 19.67 | 22.07 |
CDX89437 | Canola | mitochondrion | 19.67 | 22.07 |
Bra028253.1-P | Field mustard | mitochondrion | 14.64 | 21.74 |
CDY03368 | Canola | mitochondrion | 19.25 | 21.6 |
EER89431 | Sorghum | plastid | 18.83 | 20.74 |
CDY32630 | Canola | mitochondrion | 14.64 | 20.59 |
Os06t0219500-00 | Rice | mitochondrion | 23.85 | 18.45 |
KXG19616 | Sorghum | plastid | 20.5 | 18.22 |
Solyc08g078720.2.1 | Tomato | mitochondrion | 10.46 | 14.88 |
PGSC0003DMT400012246 | Potato | plastid | 9.62 | 13.53 |
Solyc08g078710.1.1 | Tomato | mitochondrion | 10.46 | 12.76 |
PGSC0003DMT400012247 | Potato | mitochondrion | 10.04 | 12.31 |
Protein Annotations
EnsemblPlants:TraesCS5B01G123900.1 | EnsemblPlantsGene:TraesCS5B01G123900 | InterPro:HSP20 | PANTHER:PTHR11527 | PANTHER:PTHR11527:SF176 | SEG:seg |
MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5B:+:223251969..223253895
Molecular Weight (calculated)
26315.1 Da
IEP (calculated)
4.961
GRAVY (calculated)
-0.273
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAITFKGA APASLLKSGA PVAFCALHSP TVTTDRRPYN NQVTKVGRYD DDDDYSGCDL VIPSFLSQAF DVLDVDSADV LDPHSAPTSM ARQLSPMETG
101: LSTIAGTSQL GRWVAKEDDR LAVEDALVAY TTMVDKSRPA HSQWFNDSSD NIRGCCDKAM QILCVHYGWE LGGKAQILLT VLDGDDNSVV PGYNHRMEMP
201: ADAYKINKIK AEIKNCVLWV TLLKVKEEER KNIFHVKDE
101: LSTIAGTSQL GRWVAKEDDR LAVEDALVAY TTMVDKSRPA HSQWFNDSSD NIRGCCDKAM QILCVHYGWE LGGKAQILLT VLDGDDNSVV PGYNHRMEMP
201: ADAYKINKIK AEIKNCVLWV TLLKVKEEER KNIFHVKDE
001: MASSSALALR RLLSSSTVAV PRALRAVRPV AASSRLFNTN AARNYEDGVD RNHHSNRHVS RHGGDFFSHI LDPFTPTRSL SQMLNFMDQV SEIPLVSATR
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
101: GMGASGVRRG WNVKEKDDAL HLRIDMPGLS REDVKLALEQ NTLVIRGEGE TEEGEDVSGD GRRFTSRIEL PEKVYKTDEI KAEMKNGVLK VVIPKIKEDE
201: RNNIRHINVD
Arabidopsis Description
HSP23.523.5 kDa heat shock protein, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9FGM9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.