Factsheet for TraesCS2D01G220800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 18071923
plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 18071923 doi

LA Blomqvist, M Ryberg, C Sundqvist

Department of Plant and Environmental Sciences, Göteborg University, P.O. Box 461, 405 30 Göteborg, Sweden.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G215000.1	Wheat	plastid	99.07	99.07
TraesCS2B01G240000.1	Wheat	plastid	98.6	98.6
EER97341	Sorghum	plastid	70.56	69.27
Os07t0544800-01	Rice	extracellular, plastid	70.09	69.12
Zm00001d021703_P001	Maize	plastid	68.69	67.74
Zm00001d006540_P001	Maize	plastid	66.36	65.74
HORVU0Hr1G003270.1	Barley	cytosol	85.05	64.08
HORVU2Hr1G043960.1	Barley	mitochondrion	77.1	63.95
AT4G21280.2	Thale cress	plastid	61.68	58.93
CDY46373	Canola	plastid	59.81	58.72
Bra013517.1-P	Field mustard	plastid	60.75	57.27
CDX79052	Canola	plastid	60.75	57.27
GSMUA_Achr4P23940_001	Banana	plastid	63.08	57.2
VIT_00s0904g00010.t01	Wine grape	plastid	61.68	57.14
Bra029563.1-P	Field mustard	plastid	60.28	57.08
CDX82819	Canola	plastid	60.28	56.83
CDY39157	Canola	plastid	59.81	56.64
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	59.81	55.65
Solyc02g079950.2.1	Tomato	plastid	59.35	55.22
KRH66566	Soybean	nucleus, plastid	59.35	54.74
KRH48778	Soybean	nucleus, plastid	60.28	54.66
CDX82816	Canola	cytosol, peroxisome, plastid	27.57	54.63
AT4G05180.1	Thale cress	plastid	57.48	53.48
KRG94557	Soybean	plastid	28.97	41.61
TraesCS2D01G374900.1	Wheat	plastid	19.63	21.65

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579
GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	PFAM:PF05757
InterPro:PSII_PsbQ	PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf	SUPFAM:SSF101112	EnsemblPlantsGene:TraesCS2D01G220800
EnsemblPlants:TraesCS2D01G220800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:188432778..188433638

Molecular Weight (calculated)

22905.7 Da

IEP (calculated)

10.200

GRAVY (calculated)

-0.251

Length

214 amino acids

Sequence
(BLAST)

001: MAQTMASMTG LSQGVRLPGP AGRRASRFIV RASSAEAEAA GRRAVLGLMA SGVVGSAFAQ VVHAGTVAAI KVGPPPPLSG GLPGTDNSDE ARDFDLPLKN
101: RFYLQPLPPA EAAVRAKESA QDILNLKPLI DKKQWPYVMN DLRLRASYLR YDLKTVISSK TTKEEKKDLK DLTGKLFATL DGLDHAAKIK SPTEAEKYYG
201: ETKTVLGDVL AKLG

Best Arabidopsis Sequence Match ( AT4G21280.1 )
(BLAST)

001: MASMGGLHGA SPAVLEGSLK INGSSRLNGS GRVAVAQRSR LVVRAQQSEE TSRRSVIGLV AAGLAGGSFV QAVLADAISI KVGPPPAPSG GLPGTDNSDQ
101: ARDFALALKD RFYLQPLPPT EAAARAKESA KDIINVKPLI DRKAWPYVQN DLRSKASYLR YDLNTIISSK PKDEKKSLKD LTTKLFDTID NLDYAAKKKS
201: PSQAEKYYAE TVSALNEVLA KLG

Arabidopsis Description

PSBQ1Oxygen-evolving enhancer protein 3-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XFT3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.