Factsheet for PGSC0003DMT400055931

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, cytosol

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079950.2.1	Tomato	plastid	96.96	96.96
VIT_00s0904g00010.t01	Wine grape	plastid	69.57	69.26
KRH48778	Soybean	nucleus, plastid	68.7	66.95
AT4G05180.1	Thale cress	plastid	66.52	66.52
KRH66566	Soybean	nucleus, plastid	66.96	66.38
GSMUA_Achr4P23940_001	Banana	plastid	67.83	66.1
Bra029563.1-P	Field mustard	plastid	64.78	65.93
CDY39157	Canola	plastid	64.35	65.49
CDY46373	Canola	plastid	61.3	64.68
CDX82819	Canola	plastid	63.48	64.32
CDX79052	Canola	plastid	63.04	63.88
Bra013517.1-P	Field mustard	plastid	63.04	63.88
AT4G21280.2	Thale cress	plastid	62.17	63.84
CDX82816	Canola	cytosol, peroxisome, plastid	29.57	62.96
GSMUA_Achr9P24750_001	Banana	plasma membrane, plastid	56.52	61.32
TraesCS2A01G215000.1	Wheat	plastid	56.09	60.28
Zm00001d021703_P001	Maize	plastid	56.52	59.91
TraesCS2B01G240000.1	Wheat	plastid	55.65	59.81
TraesCS2D01G220800.1	Wheat	plastid	55.65	59.81
EER97341	Sorghum	plastid	55.65	58.72
Zm00001d006540_P001	Maize	plastid	54.78	58.33
Os07t0544800-01	Rice	extracellular, plastid	54.35	57.6
KRG94557	Soybean	plastid	36.96	57.05
HORVU0Hr1G003270.1	Barley	cytosol	52.61	42.61
HORVU2Hr1G043960.1	Barley	mitochondrion	46.96	41.86
PGSC0003DMT400063427	Potato	plastid	16.09	21.26

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	EntrezGene:102602034	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523
GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898
UniProt:M1BYS2	PFAM:PF05757	EnsemblPlantsGene:PGSC0003DMG400021727	PGSC:PGSC0003DMG400021727	EnsemblPlants:PGSC0003DMT400055931	InterPro:PSII_PsbQ
PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf	SUPFAM:SSF101112	UniParc:UPI000295FEAE	RefSeq:XP_006365879.1
SEG:seg	:	:	:	:	:

Description

Photosystem II oxygen-evolving complex protein 3 [Source:PGSC_GENE;Acc:PGSC0003DMG400021727]

Coordinates

chr2:-:35663248..35665054

Molecular Weight (calculated)

24692.6 Da

IEP (calculated)

10.294

GRAVY (calculated)

-0.283

Length

230 amino acids

Sequence
(BLAST)

001: MAHAMASMGG LIGSSQTVLD GSLQLSGSAR LSTVSTTRIA LSRPGLTVRA QQGSVDIETS RRAMIGLVAA GLAGSFAKSA FAEARSIKVG PPPPPSGGLP
101: GTLNSDEARD FSLPLKNRFY LQPLTPAEAV QRVKDSAKEI VSVKNFIDKK AWPYVQNDLR LRAEYLRYDL KTVISAKPKE QKGKLQDLSG KLFKTISDLD
201: HAAKTKNSDE AQKYYAETVT TLNDVLANLG

Best Arabidopsis Sequence Match ( AT4G05180.1 )
(BLAST)

001: MAQAVTSMAG LRGASQAVLE GSLQINGSNR LNISRVSVGS QRTGLVIRAQ QNVSVPESSR RSVIGLVAAG LAGGSFVKAV FAEAIPIKVG GPPLPSGGLP
101: GTDNSDQARD FSLALKDRFY IQPLSPTEAA ARAKDSAKEI INVKSFIDKK AWPYVQNDLR LRASYLRYDL NTVISAKPKE EKQSLKDLTA KLFQTIDNLD
201: YAARSKSSPD AEKYYSETVS SLNNVLAKLG

Arabidopsis Description

PSBQ2Oxygen-evolving enhancer protein 3-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q41932]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.