CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79052	Canola	plastid	98.68	98.68
CDX82816	Canola	cytosol, peroxisome, plastid	40.09	84.26
AT4G21280.2	Thale cress	plastid	82.82	83.93
CDY39157	Canola	plastid	73.57	73.89
CDY46373	Canola	plastid	69.16	72.02
VIT_00s0904g00010.t01	Wine grape	plastid	71.81	70.56
GSMUA_Achr9P24750_001	Banana	plasma membrane, plastid	65.64	70.28
KRH66566	Soybean	nucleus, plastid	70.93	69.4
KRH48778	Soybean	nucleus, plastid	71.37	68.64
GSMUA_Achr4P23940_001	Banana	plastid	66.96	64.41
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	64.32	63.48
Os07t0544800-01	Rice	extracellular, plastid	59.91	62.67
Solyc02g079950.2.1	Tomato	plastid	63.44	62.61
Zm00001d021703_P001	Maize	plastid	59.47	62.21
EER97341	Sorghum	plastid	59.03	61.47
Zm00001d006540_P001	Maize	plastid	57.71	60.65
TraesCS2A01G215000.1	Wheat	plastid	56.83	60.28
TraesCS2B01G240000.1	Wheat	plastid	56.83	60.28
TraesCS2D01G220800.1	Wheat	plastid	56.83	60.28
KRG94557	Soybean	plastid	37.89	57.72
HORVU0Hr1G003270.1	Barley	cytosol	54.63	43.66
HORVU2Hr1G043960.1	Barley	mitochondrion	48.9	43.02
CDY58679	Canola	plastid	15.42	18.62
CDY16443	Canola	plastid	16.74	10.64

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	GO:A0A078D3I6	EnsemblPlants:CDX82819	ProteinID:CDX82819	ProteinID:CDX82819.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	EnsemblPlantsGene:GSBRNA2T00138159001	PFAM:PF05757	InterPro:PSII_PsbQ
PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf	SUPFAM:SSF101112	UniParc:UPI0004EDAD5C	SEG:seg

Description

BnaC01g12690D

Coordinates

chrLK031830:+:504013..505116

Molecular Weight (calculated)

24374.4 Da

IEP (calculated)

10.306

GRAVY (calculated)

-0.281

Length

227 amino acids

Sequence
(BLAST)

001: MASMGVGLRV TSPAVLEGSV KINGSSRLNI TGRVTVPQRS GLVVRAQQSE AAPETTRRSV IGLVAAGLAG GSFVQAVLAD AVPIKIGPPP PPSGGLPGTD
101: NSDQARDLRL ALKERFYLQP LPPTEAVARA KESAKEIVNV KSLIDKKAWP YVQNDLRLRA SYLRYDLNTI ISAKSKDEKK SLKELTGKLF DTINNLDYAA
201: KKKSTPDAEK YYSETVSTLN DVLAKLG

Best Arabidopsis Sequence Match ( AT4G21280.1 )
(BLAST)

001: MASMGGLHGA SPAVLEGSLK INGSSRLNGS GRVAVAQRSR LVVRAQQSEE TSRRSVIGLV AAGLAGGSFV QAVLADAISI KVGPPPAPSG GLPGTDNSDQ
101: ARDFALALKD RFYLQPLPPT EAAARAKESA KDIINVKPLI DRKAWPYVQN DLRSKASYLR YDLNTIISSK PKDEKKSLKD LTTKLFDTID NLDYAAKKKS
201: PSQAEKYYAE TVSALNEVLA KLG

Arabidopsis Description

PSBQ1Oxygen-evolving enhancer protein 3-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XFT3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.