CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039759.1-P	Field mustard	plastid	74.79	75.0
CDY58679	Canola	plastid	36.97	70.21
AT2G01918.1	Thale cress	plastid	30.25	57.75
TraesCS2D01G374900.1	Wheat	plastid	15.97	29.38
TraesCS2B01G395700.1	Wheat	plastid	15.69	29.32
Os04t0523000-00	Rice	plastid	15.13	29.19
Zm00001d002993_P001	Maize	plastid	15.13	29.03
PGSC0003DMT400063427	Potato	plastid	14.01	28.74
GSMUA_Achr1P02890_001	Banana	plastid	13.73	26.49
TraesCS2A01G378700.1	Wheat	plastid	16.25	26.24
KRG98043	Soybean	plastid	13.17	25.27
HORVU2Hr1G090100.1	Barley	plastid	13.45	22.54
VIT_12s0142g00310.t01	Wine grape	endoplasmic reticulum, extracellular	13.73	21.4
KXG26739	Sorghum	plastid	14.85	17.32
CDY46373	Canola	plastid	10.36	16.97
KRH30742	Soybean	plastid	9.52	16.83
CDY39157	Canola	plastid	10.64	16.81
CDX82819	Canola	plastid	10.64	16.74
CDX79052	Canola	plastid	10.36	16.3
CDX82816	Canola	cytosol, peroxisome, plastid	3.36	11.11

Protein Annotations

Gene3D:1.20.120.290	MapMan:35.1	GO:A0A078FVJ6	UniProt:A0A078FVJ6	EnsemblPlants:CDY16443	ProteinID:CDY16443
ProteinID:CDY16443.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579
GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	EnsemblPlantsGene:GSBRNA2T00091003001
PFAM:PF05757	InterPro:PSII_PsbQ	PANTHER:PTHR33399	PANTHER:PTHR33399:SF6	InterPro:PsbQ-like_dom_sf	SUPFAM:SSF101112
UniParc:UPI0004EDD626	SEG:seg	:	:	:	:

Description

BnaA02g12470DBnaA02g12470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVJ6]

Coordinates

chrLK032063:-:750427..755570

Molecular Weight (calculated)

40104.2 Da

IEP (calculated)

9.018

GRAVY (calculated)

-0.317

Length

357 amino acids

Sequence
(BLAST)

001: MALSKPPPQH FSPFNNPNPH LETAASTLTF STDSSRRIRR DVLLSVSGTI IPQLFLLDLK RSSSASAADL FSFLAPQPEP VRTVEMAKEG LRKNGENIKK
101: IKEIMIENKR WKEGGKEIRR SASNMKQDLY LIIQAKPPKD RPLLRSFYSS LFSTITKLDY AARDGDATKD CVVDYVRRWV ARIHEQTFEI SISYPKTYLD
201: VIESLIAFAV HKRVKNLVLD FSNPAWRTFH HDVNLDELVV EIPQSVYDLA TLESLKVGAC KKFDPAKLSN LGKLKTVSFG WMELKNPELF LKTSRVLDNN
301: NDESKDSNTA EGGMLCHLLN NLLDDGGRSA TTLTNVGSAM ADVFIDAMIA EALRAEK

Best Arabidopsis Sequence Match ( AT2G01918.1 )
(BLAST)

001: MAISKPPPLH FTFFHNQDSS IDTSDSNLAL SIDTSRRRRD VLLTISGTLI PQLFFFDRKR SSSANAADFF NFGAPPPEPE RTVELAQEGL RKNAENIKRI
101: KEIMIEKKLW KEGGKELRRS ASNMKQDFYL IIQAKPPKDR PLFRSLYSSL FNSITKMDYA ARDGDETKVL EYYINIVAIL DDIFPRI

Arabidopsis Description

PQL3PsbQ-like protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q2V4B2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.