CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30742	Soybean	plastid	72.58	66.83
PGSC0003DMT400063427	Potato	plastid	41.4	44.25
VIT_12s0142g00310.t01	Wine grape	endoplasmic reticulum, extracellular	49.46	40.17
GSMUA_Achr1P02890_001	Banana	plastid	37.1	37.3
TraesCS2B01G395700.1	Wheat	plastid	35.48	34.55
TraesCS2D01G374900.1	Wheat	plastid	34.95	33.51
Zm00001d002993_P001	Maize	plastid	32.26	32.26
Os04t0523000-00	Rice	plastid	31.72	31.89
TraesCS2A01G378700.1	Wheat	plastid	36.56	30.77
AT2G01918.1	Thale cress	plastid	27.96	27.81
CDY58679	Canola	plastid	24.73	24.47
HORVU2Hr1G090100.1	Barley	plastid	27.42	23.94
KXG26739	Sorghum	plastid	34.41	20.91
KRH66566	Soybean	nucleus, plastid	20.43	16.38
KRH48778	Soybean	nucleus, plastid	20.43	16.1
Bra039759.1-P	Field mustard	plastid	26.34	13.76
CDY16443	Canola	plastid	25.27	13.17
KRG94557	Soybean	plastid	4.84	6.04

Protein Annotations

Gene3D:1.20.120.290	EntrezGene:100811804	MapMan:35.1	EMBL:ACUP02010839	EnsemblPlantsGene:GLYMA_18G046700	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0019898	UniProt:I1MZK5	ProteinID:KRG98042.1	EnsemblPlants:KRG98043	ProteinID:KRG98043
ProteinID:KRG98043.1	PFAM:PF05757	InterPro:PSII_PsbQ	PANTHER:PTHR33399	PANTHER:PTHR33399:SF6	InterPro:PsbQ-like_dom_sf
SUPFAM:SSF101112	UniParc:UPI000233F58E	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:4080571..4082543

Molecular Weight (calculated)

20972.4 Da

IEP (calculated)

9.195

GRAVY (calculated)

-0.092

Length

186 amino acids

Sequence
(BLAST)

001: MELTSLILQP NLTHLFPTFT CCVKLKPSFQ HLQNNKELSL KISRRVGVLA AITSLILGVN GNFGTQSANA FEFKFVAPDM TVEDALSGVR GHAQDLLHVR
101: DLLELESWRA AQKTLRQSSA ILKKDIYTII QSKPGIERAQ LRKLYSTLFN NVTRLDYAAR DKDGPQVWQC YENIVVAVND ILSRIE

Best Arabidopsis Sequence Match ( AT2G01918.1 )
(BLAST)

001: MAISKPPPLH FTFFHNQDSS IDTSDSNLAL SIDTSRRRRD VLLTISGTLI PQLFFFDRKR SSSANAADFF NFGAPPPEPE RTVELAQEGL RKNAENIKRI
101: KEIMIEKKLW KEGGKELRRS ASNMKQDFYL IIQAKPPKDR PLFRSLYSSL FNSITKMDYA ARDGDETKVL EYYINIVAIL DDIFPRI

Arabidopsis Description

PQL3PsbQ-like protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q2V4B2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.