CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48778	Soybean	nucleus, plastid	95.26	93.64
KRG94557	Soybean	plastid	57.76	89.93
VIT_00s0904g00010.t01	Wine grape	plastid	81.03	81.39
GSMUA_Achr4P23940_001	Banana	plastid	73.28	72.03
GSMUA_Achr9P24750_001	Banana	plasma membrane, plastid	65.52	71.7
Bra013517.1-P	Field mustard	plastid	69.83	71.37
CDX79052	Canola	plastid	69.83	71.37
CDX82819	Canola	plastid	69.4	70.93
Bra029563.1-P	Field mustard	plastid	68.1	69.91
CDY39157	Canola	plastid	67.67	69.47
AT4G21280.2	Thale cress	plastid	66.81	69.2
AT4G05180.1	Thale cress	plastid	68.53	69.13
CDY46373	Canola	plastid	64.66	68.81
CDX82816	Canola	cytosol, peroxisome, plastid	31.47	67.59
Solyc02g079950.2.1	Tomato	plastid	66.38	66.96
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	66.38	66.96
Os07t0544800-01	Rice	extracellular, plastid	60.34	64.52
Zm00001d021703_P001	Maize	plastid	59.48	63.59
Zm00001d006540_P001	Maize	plastid	58.62	62.96
EER97341	Sorghum	plastid	59.05	62.84
TraesCS2B01G240000.1	Wheat	plastid	55.6	60.28
TraesCS2A01G215000.1	Wheat	plastid	55.17	59.81
TraesCS2D01G220800.1	Wheat	plastid	54.74	59.35
HORVU0Hr1G003270.1	Barley	cytosol	52.59	42.96
HORVU2Hr1G043960.1	Barley	mitochondrion	46.12	41.47
KRG98043	Soybean	plastid	16.38	20.43
KRH30742	Soybean	plastid	12.93	14.85

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	EntrezGene:100499794	EMBL:ACUP02001982	EMBL:BT089592	UniProt:C6SWP9
EnsemblPlantsGene:GLYMA_03G114600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	EnsemblPlants:KRH66566	ProteinID:KRH66566
ProteinID:KRH66566.1	PFAM:PF05757	InterPro:PSII_PsbQ	PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf
SUPFAM:SSF101112	UniParc:UPI0001B15002	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:32187214..32189441

Molecular Weight (calculated)

24770.8 Da

IEP (calculated)

10.528

GRAVY (calculated)

-0.294

Length

232 amino acids

Sequence
(BLAST)

001: MAQAMASMTS LRGSSQAVLE GSLGSTRLNV GSGSRVASVT RAGFTVRAQQ QQVNGGEVQS SRRAVLSLVA AGLTTGSFVQ AVLADAKPIK VGPPPPPSGG
101: LPGTLNSDEP RDLKLPLKDR FFLQPLSPTD AAQRAKESAK EIVGVKKLIE KKAWPYVQND LRLRAEYLRF DLNTVIAAKP KDEKKSLKEL TGKLFQDISN
201: LDHAAKIKSS PEAEKYYAAT VSSLNDVLAK LG

Best Arabidopsis Sequence Match ( AT4G05180.1 )
(BLAST)

001: MAQAVTSMAG LRGASQAVLE GSLQINGSNR LNISRVSVGS QRTGLVIRAQ QNVSVPESSR RSVIGLVAAG LAGGSFVKAV FAEAIPIKVG GPPLPSGGLP
101: GTDNSDQARD FSLALKDRFY IQPLSPTEAA ARAKDSAKEI INVKSFIDKK AWPYVQNDLR LRASYLRYDL NTVISAKPKE EKQSLKDLTA KLFQTIDNLD
201: YAARSKSSPD AEKYYSETVS SLNNVLAKLG

Arabidopsis Description

PSBQ2Oxygen-evolving enhancer protein 3-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q41932]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.