CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029563.1-P	Field mustard	plastid	99.56	99.56
CDY46373	Canola	plastid	88.5	91.74
AT4G05180.1	Thale cress	plastid	90.71	89.13
CDX82819	Canola	plastid	73.89	73.57
CDX79052	Canola	plastid	73.01	72.69
VIT_00s0904g00010.t01	Wine grape	plastid	71.24	69.7
CDX82816	Canola	cytosol, peroxisome, plastid	33.19	69.44
KRH66566	Soybean	nucleus, plastid	69.47	67.67
GSMUA_Achr9P24750_001	Banana	plasma membrane, plastid	63.27	67.45
KRH48778	Soybean	nucleus, plastid	70.35	67.37
Solyc02g079950.2.1	Tomato	plastid	65.49	64.35
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	65.49	64.35
GSMUA_Achr4P23940_001	Banana	plastid	65.49	62.71
EER97341	Sorghum	plastid	60.18	62.39
Zm00001d021703_P001	Maize	plastid	59.73	62.21
Zm00001d006540_P001	Maize	plastid	58.85	61.57
TraesCS2A01G215000.1	Wheat	plastid	56.64	59.81
TraesCS2B01G240000.1	Wheat	plastid	56.64	59.81
TraesCS2D01G220800.1	Wheat	plastid	56.64	59.81
Os07t0544800-01	Rice	extracellular, plastid	57.08	59.45
KRG94557	Soybean	plastid	34.51	52.35
HORVU2Hr1G043960.1	Barley	mitochondrion	50.0	43.8
HORVU0Hr1G003270.1	Barley	cytosol	53.98	42.96
CDY58679	Canola	plastid	17.7	21.28
CDY16443	Canola	plastid	16.81	10.64

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	GO:A0A078HMQ8	UniProt:A0A078HMQ8	EnsemblPlants:CDY39157	ProteinID:CDY39157
ProteinID:CDY39157.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654
GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	EnsemblPlantsGene:GSBRNA2T00067337001	PFAM:PF05757
InterPro:PSII_PsbQ	PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf	SUPFAM:SSF101112	UniParc:UPI0004EE6E00
SEG:seg	:	:	:	:	:

Description

BnaC09g21870DBnaC09g21870D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMQ8]

Coordinates

chrLK032442:-:17070..18663

Molecular Weight (calculated)

24342.0 Da

IEP (calculated)

10.327

GRAVY (calculated)

-0.370

Length

226 amino acids

Sequence
(BLAST)

001: MAQAMTSMAG LRGASQALQT NDSNRLSISR VTVGSKRTGL VIRAQQNESV PESSRRSVIG LVAAGLVGGS FVKSAVAAEA LAIKVGPPPP PSGGLPGTDN
101: SDQARDFSLK LKDRFYIQPL SPTEAAARAK ESAKEIINVK TLIDKKAWPY VQNDLRLRAS YLRYDLNTVI SAKPKEEKQS LKELTGKLFQ TIDNLDYAAR
201: SKSSPDAEKY YSETVSSLNN VLAKIG

Best Arabidopsis Sequence Match ( AT4G05180.1 )
(BLAST)

001: MAQAVTSMAG LRGASQAVLE GSLQINGSNR LNISRVSVGS QRTGLVIRAQ QNVSVPESSR RSVIGLVAAG LAGGSFVKAV FAEAIPIKVG GPPLPSGGLP
101: GTDNSDQARD FSLALKDRFY IQPLSPTEAA ARAKDSAKEI INVKSFIDKK AWPYVQNDLR LRASYLRYDL NTVISAKPKE EKQSLKDLTA KLFQTIDNLD
201: YAARSKSSPD AEKYYSETVS SLNNVLAKLG

Arabidopsis Description

PSBQ2Oxygen-evolving enhancer protein 3-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q41932]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.