Factsheet for VIT_00s0904g00010.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48778	Soybean	nucleus, plastid	83.55	81.78
KRH66566	Soybean	nucleus, plastid	81.39	81.03
GSMUA_Achr4P23940_001	Banana	plastid	76.19	74.58
GSMUA_Achr9P24750_001	Banana	plasma membrane, plastid	67.97	74.06
CDX82819	Canola	plastid	70.56	71.81
Bra013517.1-P	Field mustard	plastid	70.13	71.37
CDX79052	Canola	plastid	70.13	71.37
CDY39157	Canola	plastid	69.7	71.24
AT4G21280.2	Thale cress	plastid	68.83	70.98
Bra029563.1-P	Field mustard	plastid	69.26	70.8
KRG94557	Soybean	plastid	45.02	69.8
CDY46373	Canola	plastid	65.8	69.72
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	69.26	69.57
Solyc02g079950.2.1	Tomato	plastid	69.26	69.57
CDX82816	Canola	cytosol, peroxisome, plastid	32.47	69.44
AT4G05180.1	Thale cress	plastid	68.83	69.13
EER97341	Sorghum	plastid	61.47	65.14
Zm00001d021703_P001	Maize	plastid	61.04	64.98
Os07t0544800-01	Rice	extracellular, plastid	60.61	64.52
Zm00001d006540_P001	Maize	plastid	59.31	63.43
TraesCS2B01G240000.1	Wheat	plastid	57.58	62.15
TraesCS2A01G215000.1	Wheat	plastid	57.14	61.68
TraesCS2D01G220800.1	Wheat	plastid	57.14	61.68
HORVU0Hr1G003270.1	Barley	cytosol	55.84	45.42
HORVU2Hr1G043960.1	Barley	mitochondrion	48.92	43.8
VIT_12s0142g00310.t01	Wine grape	endoplasmic reticulum, extracellular	20.35	20.52

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	EntrezGene:100240959	wikigene:100240959	ProteinID:CCB48457	ProteinID:CCB48457.1
UniProt:F6H8B4	EMBL:FN595311	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579
GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	EntrezGene:LOC100240959
wikigene:LOC100240959	PFAM:PF05757	InterPro:PSII_PsbQ	PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf
SUPFAM:SSF101112	TIGR:TC52084	UniParc:UPI00015CE5F6	ArrayExpress:VIT_00s0904g00010	EnsemblPlantsGene:VIT_00s0904g00010	EnsemblPlants:VIT_00s0904g00010.t01
unigene:Vvi.7580	RefSeq:XP_002275624	RefSeq:XP_002275624.1	SEG:seg	:	:

Description

No Description!

Coordinates

chrUn:-:36673516..36674657

Molecular Weight (calculated)

24333.3 Da

IEP (calculated)

10.236

GRAVY (calculated)

-0.154

Length

231 amino acids

Sequence
(BLAST)

001: MAQAMASMAG LRGSSQAVLE GSLQISGSTR LSSGSSSRVG VARPGFSVRA QQAPVEPETS RRAVLGLVAA GLASGSFVQA VLAEAKSIKV GPPPPPSGGL
101: PGTLNSDEAR DLDLPLKDRF FIQPLPPAAA AVRAKESAKD IVGVKTLIDK KAWPYVQMDL RLKAEYLRYD LNTVISAKPK DEKKSLKELT GKLFSTISDL
201: DHAAKIKSSP DAEKYYAATV STLNDVLSKI G

Best Arabidopsis Sequence Match ( AT4G05180.1 )
(BLAST)

001: MAQAVTSMAG LRGASQAVLE GSLQINGSNR LNISRVSVGS QRTGLVIRAQ QNVSVPESSR RSVIGLVAAG LAGGSFVKAV FAEAIPIKVG GPPLPSGGLP
101: GTDNSDQARD FSLALKDRFY IQPLSPTEAA ARAKDSAKEI INVKSFIDKK AWPYVQNDLR LRASYLRYDL NTVISAKPKE EKQSLKDLTA KLFQTIDNLD
201: YAARSKSSPD AEKYYSETVS SLNNVLAKLG

Arabidopsis Description

PSBQ2Oxygen-evolving enhancer protein 3-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q41932]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.