Factsheet for VIT_12s0142g00310.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG98043	Soybean	plastid	40.17	49.46
PGSC0003DMT400063427	Potato	plastid	35.81	47.13
GSMUA_Achr1P02890_001	Banana	plastid	34.06	42.16
Os04t0523000-00	Rice	plastid	31.88	39.46
KRH30742	Soybean	plastid	31.88	36.14
Zm00001d002993_P001	Maize	plastid	29.26	36.02
TraesCS2B01G395700.1	Wheat	plastid	29.26	35.08
TraesCS2D01G374900.1	Wheat	plastid	29.26	34.54
TraesCS2A01G378700.1	Wheat	plastid	30.13	31.22
AT2G01918.1	Thale cress	plastid	25.33	31.02
CDY58679	Canola	plastid	24.02	29.26
HORVU2Hr1G090100.1	Barley	plastid	22.71	24.41
KXG26739	Sorghum	plastid	31.44	23.53
VIT_00s0904g00010.t01	Wine grape	plastid	20.52	20.35
Bra039759.1-P	Field mustard	plastid	22.27	14.33
CDY16443	Canola	plastid	21.4	13.73

Protein Annotations

Gene3D:1.20.120.290	EntrezGene:100248901	wikigene:100248901	MapMan:35.1	EMBL:AM442840	ProteinID:CAN78534
ProteinID:CAN78534.1	ProteinID:CCB56405	ProteinID:CCB56405.1	UniProt:F6HNZ9	EMBL:FN595999	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0019898	EntrezGene:LOC100248901	wikigene:LOC100248901	PFAM:PF05757	InterPro:PSII_PsbQ
PANTHER:PTHR33399	PANTHER:PTHR33399:SF6	InterPro:PsbQ-like_dom_sf	SUPFAM:SSF101112	SignalP:SignalP-noTM	UniParc:UPI0002107FF6
ArrayExpress:VIT_12s0142g00310	EnsemblPlantsGene:VIT_12s0142g00310	EnsemblPlants:VIT_12s0142g00310.t01	unigene:Vvi.11890	RefSeq:XP_002283897	RefSeq:XP_002283897.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:234515..240453

Molecular Weight (calculated)

26302.2 Da

IEP (calculated)

9.925

GRAVY (calculated)

-0.048

Length

229 amino acids

Sequence
(BLAST)

001: MFYLLWGWVN WGWGNSVSLA LLECLKENLF WDIIKQIALL QYNRAMALVP RFVQSSPLYL SPNFICHLKP SFLLRENPEK VPKSNFTRRI GAIATMAKVL
101: LAREAIFNVK IANGFDFKMV APGQTLEEAE SGIRGHALAL LQVKALIESE AWKDMQKALR KSSSLLKQDI YTIIQSKPGS MRPQLRKLYS NLFNNVTRLD
201: YAARDNDATQ VWEYYEKIAI TLDDILSRI

Best Arabidopsis Sequence Match ( AT2G01918.1 )
(BLAST)

001: MAISKPPPLH FTFFHNQDSS IDTSDSNLAL SIDTSRRRRD VLLTISGTLI PQLFFFDRKR SSSANAADFF NFGAPPPEPE RTVELAQEGL RKNAENIKRI
101: KEIMIEKKLW KEGGKELRRS ASNMKQDFYL IIQAKPPKDR PLFRSLYSSL FNSITKMDYA ARDGDETKVL EYYINIVAIL DDIFPRI

Arabidopsis Description

PQL3PsbQ-like protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q2V4B2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.