CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66566	Soybean	nucleus, plastid	93.64	95.26
KRG94557	Soybean	plastid	53.39	84.56
VIT_00s0904g00010.t01	Wine grape	plastid	81.78	83.55
GSMUA_Achr4P23940_001	Banana	plastid	73.73	73.73
GSMUA_Achr9P24750_001	Banana	plasma membrane, plastid	66.1	73.58
Bra013517.1-P	Field mustard	plastid	69.07	71.81
CDX79052	Canola	plastid	69.07	71.81
CDX82819	Canola	plastid	68.64	71.37
AT4G21280.2	Thale cress	plastid	67.37	70.98
Bra029563.1-P	Field mustard	plastid	67.8	70.8
CDY39157	Canola	plastid	67.37	70.35
AT4G05180.1	Thale cress	plastid	68.22	70.0
CDY46373	Canola	plastid	64.41	69.72
Solyc02g079950.2.1	Tomato	plastid	66.95	68.7
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	66.95	68.7
CDX82816	Canola	cytosol, peroxisome, plastid	30.51	66.67
Os07t0544800-01	Rice	extracellular, plastid	59.75	64.98
Zm00001d021703_P001	Maize	plastid	58.9	64.06
EER97341	Sorghum	plastid	58.9	63.76
Zm00001d006540_P001	Maize	plastid	57.63	62.96
TraesCS2B01G240000.1	Wheat	plastid	55.51	61.22
TraesCS2A01G215000.1	Wheat	plastid	55.08	60.75
TraesCS2D01G220800.1	Wheat	plastid	54.66	60.28
HORVU0Hr1G003270.1	Barley	cytosol	52.12	43.31
HORVU2Hr1G043960.1	Barley	mitochondrion	46.19	42.25
KRG98043	Soybean	plastid	16.1	20.43
KRH30742	Soybean	plastid	13.56	15.84

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	ProteinID:ACJ61487.1	EMBL:ACUP02004283	EnsemblPlantsGene:GLYMA_07G112000	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150
GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979
GO:GO:0016020	GO:GO:0019898	UniProt:I1KJL7	EnsemblPlants:KRH48778	ProteinID:KRH48778	ProteinID:KRH48778.1
PFAM:PF05757	InterPro:PSII_PsbQ	PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf	SUPFAM:SSF101112
UniParc:UPI00023C7A47	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:11575430..11577178

Molecular Weight (calculated)

25152.3 Da

IEP (calculated)

10.555

GRAVY (calculated)

-0.251

Length

236 amino acids

Sequence
(BLAST)

001: MAQAMASMAG LRGSSQAVLE GSLQVSGSTR LNVGSGSRVA SVTRAGFTVR AQQQQVSGEV QSSRRAVLSL VAAGLATGSF VQAVLADAKS IKVGPPPPPS
101: GGLRMSGTLN SDEARDLQLP LKDRFFLQPL SPTEAAQRAK ESAKEIVGVK KLIEKKAWPY VQNDLRLRAE YLRFDLNTVI AGKPKDEKKS LKELTGKLFQ
201: DISNLDHAAK IKSSPEAEKY YAATVSSLND VLAKLG

Best Arabidopsis Sequence Match ( AT4G05180.1 )
(BLAST)

001: MAQAVTSMAG LRGASQAVLE GSLQINGSNR LNISRVSVGS QRTGLVIRAQ QNVSVPESSR RSVIGLVAAG LAGGSFVKAV FAEAIPIKVG GPPLPSGGLP
101: GTDNSDQARD FSLALKDRFY IQPLSPTEAA ARAKDSAKEI INVKSFIDKK AWPYVQNDLR LRASYLRYDL NTVISAKPKE EKQSLKDLTA KLFQTIDNLD
201: YAARSKSSPD AEKYYSETVS SLNNVLAKLG

Arabidopsis Description

PSBQ2Oxygen-evolving enhancer protein 3-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q41932]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.