CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra013517.1-P	Field mustard	plastid	100.0	100.0
CDX82819	Canola	plastid	98.68	98.68
AT4G21280.2	Thale cress	plastid	83.26	84.38
CDX82816	Canola	cytosol, peroxisome, plastid	40.09	84.26
CDY39157	Canola	plastid	72.69	73.01
CDY46373	Canola	plastid	68.72	71.56
VIT_00s0904g00010.t01	Wine grape	plastid	71.37	70.13
KRH66566	Soybean	nucleus, plastid	71.37	69.83
GSMUA_Achr9P24750_001	Banana	plasma membrane, plastid	65.2	69.81
KRH48778	Soybean	nucleus, plastid	71.81	69.07
GSMUA_Achr4P23940_001	Banana	plastid	66.52	63.98
Os07t0544800-01	Rice	extracellular, plastid	60.35	63.13
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	63.88	63.04
Zm00001d021703_P001	Maize	plastid	59.91	62.67
Solyc02g079950.2.1	Tomato	plastid	63.0	62.17
EER97341	Sorghum	plastid	59.47	61.93
Zm00001d006540_P001	Maize	plastid	58.15	61.11
TraesCS2A01G215000.1	Wheat	plastid	57.27	60.75
TraesCS2B01G240000.1	Wheat	plastid	57.27	60.75
TraesCS2D01G220800.1	Wheat	plastid	57.27	60.75
KRG94557	Soybean	plastid	38.77	59.06
HORVU0Hr1G003270.1	Barley	cytosol	55.07	44.01
HORVU2Hr1G043960.1	Barley	mitochondrion	49.34	43.41
CDY58679	Canola	plastid	14.98	18.09
CDY16443	Canola	plastid	16.3	10.36

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	GO:A0A078CQS6	EnsemblPlants:CDX79052	ProteinID:CDX79052	ProteinID:CDX79052.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	EnsemblPlantsGene:GSBRNA2T00131583001	PFAM:PF05757	InterPro:PSII_PsbQ
PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf	SUPFAM:SSF101112	UniParc:UPI00015D7BD8	SEG:seg

Description

BnaA01g11190D

Coordinates

chrLK031816:+:1524151..1525274

Molecular Weight (calculated)

24348.3 Da

IEP (calculated)

10.287

GRAVY (calculated)

-0.292

Length

227 amino acids

Sequence
(BLAST)

001: MASMGVGLRV TSPAVLEGSV KINGSSRLNV TGRVTVPQRS GLVVRAQQSE AAPETTRRSV IGLVAAGLAG GSFVQAVLAD AVPIKIGPPP PPSGGLPGTD
101: NSDQARDLKL ALKERFYLQP LPPTEAVARA KESAKEIVNV KSLIDKKAWP YVQNDLRLRA SYLRYDLNTI ISSKSKDEKK SLKELTGKLF DTINNLDYAA
201: KKKSTPDAEK YYSETVSTLN DVLAKLG

Best Arabidopsis Sequence Match ( AT4G21280.1 )
(BLAST)

001: MASMGGLHGA SPAVLEGSLK INGSSRLNGS GRVAVAQRSR LVVRAQQSEE TSRRSVIGLV AAGLAGGSFV QAVLADAISI KVGPPPAPSG GLPGTDNSDQ
101: ARDFALALKD RFYLQPLPPT EAAARAKESA KDIINVKPLI DRKAWPYVQN DLRSKASYLR YDLNTIISSK PKDEKKSLKD LTTKLFDTID NLDYAAKKKS
201: PSQAEKYYAE TVSALNEVLA KLG

Arabidopsis Description

PSBQ1Oxygen-evolving enhancer protein 3-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XFT3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.