CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
plastid 2
peroxisome 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	nucleus, peroxisome, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79052	Canola	plastid	84.26	40.09
CDX82819	Canola	plastid	84.26	40.09
KRG94557	Soybean	plastid	50.93	36.91
CDY46373	Canola	plastid	69.44	34.4
AT4G21280.2	Thale cress	plastid	71.3	34.38
CDY39157	Canola	plastid	69.44	33.19
GSMUA_Achr9P24750_001	Banana	plasma membrane, plastid	63.89	32.55
VIT_00s0904g00010.t01	Wine grape	plastid	69.44	32.47
KRH66566	Soybean	nucleus, plastid	67.59	31.47
KRH48778	Soybean	nucleus, plastid	66.67	30.51
Os07t0544800-01	Rice	extracellular, plastid	60.19	29.95
EER97341	Sorghum	plastid	60.19	29.82
Zm00001d006540_P001	Maize	plastid	59.26	29.63
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	62.96	29.57
Zm00001d021703_P001	Maize	plastid	59.26	29.49
Solyc02g079950.2.1	Tomato	plastid	62.04	29.13
GSMUA_Achr4P23940_001	Banana	plastid	62.04	28.39
TraesCS2A01G215000.1	Wheat	plastid	54.63	27.57
TraesCS2B01G240000.1	Wheat	plastid	54.63	27.57
TraesCS2D01G220800.1	Wheat	plastid	54.63	27.57
HORVU0Hr1G003270.1	Barley	cytosol	54.63	20.77
HORVU2Hr1G043960.1	Barley	mitochondrion	45.37	18.99
CDY58679	Canola	plastid	13.89	7.98
CDY16443	Canola	plastid	11.11	3.36

Protein Annotations

Gene3D:1.20.120.290	MapMan:35.2	GO:A0A078D094	EnsemblPlants:CDX82816	ProteinID:CDX82816	ProteinID:CDX82816.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	EnsemblPlantsGene:GSBRNA2T00138156001	PFAM:PF05757	InterPro:PSII_PsbQ
PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf	SUPFAM:SSF101112	UniParc:UPI0004EF0D8F	SEG:seg

Description

BnaC01g12660D

Coordinates

chrLK031830:+:495229..496574

Molecular Weight (calculated)

11074.5 Da

IEP (calculated)

9.859

GRAVY (calculated)

0.061

Length

108 amino acids

Sequence
(BLAST)

001: MASMGVGLPQ QSEAAPETTR RSVIGLVAAG LAGGSFVQAV LADAVPIKIG PPPPPSGGLP TGTDNSNQAV ARAKESAKEI VNVKSLIDKK AWPYVQNDLC
101: LRAIVTKL

Best Arabidopsis Sequence Match ( AT4G05180.1 )
(BLAST)

001: MAQAVTSMAG LRGASQAVLE GSLQINGSNR LNISRVSVGS QRTGLVIRAQ QNVSVPESSR RSVIGLVAAG LAGGSFVKAV FAEAIPIKVG GPPLPSGGLP
101: GTDNSDQARD FSLALKDRFY IQPLSPTEAA ARAKDSAKEI INVKSFIDKK AWPYVQNDLR LRASYLRYDL NTVISAKPKE EKQSLKDLTA KLFQTIDNLD
201: YAARSKSSPD AEKYYSETVS SLNNVLAKLG

Arabidopsis Description

PSBQ2Oxygen-evolving enhancer protein 3-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q41932]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.