CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021703_P001	Maize	plastid	89.91	90.32
TraesCS2A01G215000.1	Wheat	plastid	69.72	71.03
Os07t0544800-01	Rice	extracellular, plastid	70.64	70.97
TraesCS2D01G220800.1	Wheat	plastid	69.27	70.56
TraesCS2B01G240000.1	Wheat	plastid	69.27	70.56
CDY46373	Canola	plastid	62.84	62.84
VIT_00s0904g00010.t01	Wine grape	plastid	65.14	61.47
Bra029563.1-P	Field mustard	plastid	62.84	60.62
CDX82816	Canola	cytosol, peroxisome, plastid	29.82	60.19
CDY39157	Canola	plastid	62.39	60.18
AT4G21280.2	Thale cress	plastid	61.47	59.82
CDX79052	Canola	plastid	61.93	59.47
Bra013517.1-P	Field mustard	plastid	61.93	59.47
KRH66566	Soybean	nucleus, plastid	62.84	59.05
CDX82819	Canola	plastid	61.47	59.03
KRH48778	Soybean	nucleus, plastid	63.76	58.9
GSMUA_Achr4P23940_001	Banana	plastid	62.84	58.05
AT4G05180.1	Thale cress	plastid	60.09	56.96
Solyc02g079950.2.1	Tomato	plastid	59.17	56.09
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	58.72	55.65
HORVU2Hr1G043960.1	Barley	mitochondrion	59.63	50.39
HORVU0Hr1G003270.1	Barley	cytosol	64.68	49.65
KRG94557	Soybean	plastid	28.9	42.28
KXG26739	Sorghum	plastid	22.02	15.69

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	UniProt:C5XAT4	EnsemblPlants:EER97341	ProteinID:EER97341	ProteinID:EER97341.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0008150	GO:GO:0008152	GO:GO:0009523	GO:GO:0009579	GO:GO:0009654	GO:GO:0009987
GO:GO:0015979	GO:GO:0016020	GO:GO:0019898	PFAM:PF05757	InterPro:PSII_PsbQ	PANTHER:PTHR33399
PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf	EnsemblPlantsGene:SORBI_3002G329600	SUPFAM:SSF101112	unigene:Sbi.4646	UniParc:UPI00018C6DB8
RefSeq:XP_002460820.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:69858982..69860367

Molecular Weight (calculated)

22978.8 Da

IEP (calculated)

10.440

GRAVY (calculated)

-0.181

Length

218 amino acids

Sequence
(BLAST)

001: MAQAMASMTG LSQGVLPSRR AANRARAAAV VVRASAEGEA AAAQPGRRAV LGLVATGVVG GALSQAVHAA TVNSIKIGAP PPPSGGLPGT ENSDQARDFG
101: LPLKDRFYLQ PLPPAEAAAR VKTSAQDIIN LKPLIDKKAW PYVQNDLRLR ASYLRYDLKT VIASKPKEEK KSLKELTGKL FSTIDDLDHA AKIKSTPEAE
201: KYFAATKDVL GDVLAKIG

Best Arabidopsis Sequence Match ( AT4G21280.1 )
(BLAST)

001: MASMGGLHGA SPAVLEGSLK INGSSRLNGS GRVAVAQRSR LVVRAQQSEE TSRRSVIGLV AAGLAGGSFV QAVLADAISI KVGPPPAPSG GLPGTDNSDQ
101: ARDFALALKD RFYLQPLPPT EAAARAKESA KDIINVKPLI DRKAWPYVQN DLRSKASYLR YDLNTIISSK PKDEKKSLKD LTTKLFDTID NLDYAAKKKS
201: PSQAEKYYAE TVSALNEVLA KLG

Arabidopsis Description

PSBQ1Oxygen-evolving enhancer protein 3-1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9XFT3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.