Factsheet for Solyc02g079950.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

plastid: 20363867
extracellular: 22364583
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055931	Potato	cytosol, extracellular, plastid	96.96	96.96
VIT_00s0904g00010.t01	Wine grape	plastid	69.57	69.26
KRH48778	Soybean	nucleus, plastid	68.7	66.95
AT4G05180.1	Thale cress	plastid	66.52	66.52
KRH66566	Soybean	nucleus, plastid	66.96	66.38
GSMUA_Achr4P23940_001	Banana	plastid	67.83	66.1
Bra029563.1-P	Field mustard	plastid	64.78	65.93
CDY39157	Canola	plastid	64.35	65.49
CDY46373	Canola	plastid	61.3	64.68
AT4G21280.2	Thale cress	plastid	62.17	63.84
CDX82819	Canola	plastid	62.61	63.44
Bra013517.1-P	Field mustard	plastid	62.17	63.0
CDX79052	Canola	plastid	62.17	63.0
CDX82816	Canola	cytosol, peroxisome, plastid	29.13	62.04
GSMUA_Achr9P24750_001	Banana	plasma membrane, plastid	56.52	61.32
Zm00001d021703_P001	Maize	plastid	56.96	60.37
TraesCS2A01G215000.1	Wheat	plastid	55.65	59.81
TraesCS2B01G240000.1	Wheat	plastid	55.22	59.35
TraesCS2D01G220800.1	Wheat	plastid	55.22	59.35
EER97341	Sorghum	plastid	56.09	59.17
Os07t0544800-01	Rice	extracellular, plastid	54.78	58.06
Zm00001d006540_P001	Maize	plastid	54.35	57.87
KRG94557	Soybean	plastid	36.96	57.05
HORVU0Hr1G003270.1	Barley	cytosol	52.17	42.25
HORVU2Hr1G043960.1	Barley	mitochondrion	46.52	41.47

Protein Annotations

MapMan:1.1.1.2.2.2.2	Gene3D:1.20.120.290	EMBL:AY568719	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0008150	GO:GO:0008152	GO:GO:0009523
GO:GO:0009579	GO:GO:0009654	GO:GO:0009987	GO:GO:0015979	GO:GO:0016020	GO:GO:0019898
PFAM:PF05757	InterPro:PSII_PsbQ	PANTHER:PTHR33399	PANTHER:PTHR33399:SF3	InterPro:PsbQ-like_dom_sf	UniProt:Q672Q6
SUPFAM:SSF101112	EnsemblPlantsGene:Solyc02g079950.2	EnsemblPlants:Solyc02g079950.2.1	UniParc:UPI000042815E	SEG:seg	:

Description

Photosystem II oxygen-evolving complex protein 3 [Source:UniProtKB/TrEMBL;Acc:Q672Q6]

Coordinates

chr2:-:44329766..44331669

Molecular Weight (calculated)

24573.5 Da

IEP (calculated)

10.220

GRAVY (calculated)

-0.240

Length

230 amino acids

Sequence
(BLAST)

001: MAHAMASMGG LIGSSQTVLD GSLQLSGSAR LSTVSTNRIA LSRPGLTVRA QQGSVDIETS RRAMIGLVAA GLAGSVAKAA FAEARSIKVG PPPPPSGGLP
101: GTLNSDEARD FSLPLKNRFY LQPLTPAEAA QRVKDSAKEI VSVKDFIDKK AWPYVQNDLR LRAEYLRYDL KTVISAMPKE QKGKLQDLSG KLFKTISDLD
201: HAAKTKNSAE AQKYYAETVT TLNDVLANLG

Best Arabidopsis Sequence Match ( AT4G05180.1 )
(BLAST)

001: MAQAVTSMAG LRGASQAVLE GSLQINGSNR LNISRVSVGS QRTGLVIRAQ QNVSVPESSR RSVIGLVAAG LAGGSFVKAV FAEAIPIKVG GPPLPSGGLP
101: GTDNSDQARD FSLALKDRFY IQPLSPTEAA ARAKDSAKEI INVKSFIDKK AWPYVQNDLR LRASYLRYDL NTVISAKPKE EKQSLKDLTA KLFQTIDNLD
201: YAARSKSSPD AEKYYSETVS SLNNVLAKLG

Arabidopsis Description

PSBQ2Oxygen-evolving enhancer protein 3-2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q41932]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.