Factsheet for TraesCS1A01G067400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G085900.1	Wheat	mitochondrion	92.97	94.23
TraesCS1D01G068400.1	Wheat	mitochondrion	92.24	92.47
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	87.52	86.99
TraesCS1A01G067600.1	Wheat	mitochondrion	80.61	81.8
TraesCS1A01G067800.1	Wheat	cytosol	34.91	77.01
TraesCS1A01G067700.1	Wheat	extracellular	30.3	74.18
TraesCS1A01G055600.1	Wheat	cytosol	28.48	72.31
TraesCS1A01G073700.1	Wheat	cytosol	33.21	71.17
TraesCS6A01G311600.1	Wheat	mitochondrion	71.64	70.69
TraesCS1A01G055500.1	Wheat	mitochondrion	18.55	70.51
TraesCS1A01G056000.1	Wheat	cytosol	34.3	70.4
TraesCS1A01G054700.2	Wheat	mitochondrion	68.85	69.95
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	60.73	69.87
TraesCS1A01G073600.1	Wheat	mitochondrion	33.09	69.64
TraesCS1A01G067000.1	Wheat	mitochondrion	60.0	69.13
TraesCS1A01G054800.1	Wheat	cytosol	48.73	69.07
TraesCS1A01G055800.1	Wheat	mitochondrion	63.64	68.09
TraesCS1A01G073800.1	Wheat	mitochondrion	27.27	67.57
TraesCS1A01G054500.1	Wheat	mitochondrion	63.64	67.31
TraesCS1A01G066600.1	Wheat	mitochondrion	21.09	66.16
TraesCS1A01G057300.1	Wheat	cytosol	56.61	65.04
TraesCS1A01G074000.1	Wheat	mitochondrion	21.58	62.9
TraesCS1A01G031600.1	Wheat	cytosol	49.21	61.33
TraesCS1A01G031700.1	Wheat	plastid	52.73	58.7
TraesCS2A01G530600.1	Wheat	cytosol	54.06	58.3
TraesCS2A01G531100.1	Wheat	cytosol	40.12	58.17
TraesCS2A01G531000.1	Wheat	golgi	47.76	58.03
KXG28799	Sorghum	plastid	53.33	57.89
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	35.52	57.34
Zm00001d007534_P001	Maize	plastid	53.82	57.14
Zm00001d007531_P001	Maize	plastid	56.12	56.88
TraesCS2A01G526200.1	Wheat	golgi	46.91	56.83
Zm00001d007559_P001	Maize	plastid	56.12	56.67
Zm00001d007548_P001	Maize	plastid	55.88	56.63
Zm00001d007555_P001	Maize	plastid	55.88	56.63
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	31.39	53.51
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	24.48	53.44
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.45	53.26
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	31.64	51.89
KXG35774	Sorghum	cytosol, mitochondrion	29.58	51.59
Os04t0349600-01	Rice	plastid	22.67	48.32
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	39.52	45.66
TraesCS6A01G014600.1	Wheat	cytosol	21.7	45.32
Os04t0351333-00	Rice	cytosol	47.27	44.37
TraesCS6A01G015000.1	Wheat	mitochondrion	22.06	43.86
TraesCS6A01G083000.1	Wheat	cytosol	23.27	42.11
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	12.85	41.9
Solyc06g007280.2.1	Tomato	cytosol	11.15	36.08
KRH39112	Soybean	cytosol	19.76	32.8
VIT_14s0081g00110.t01	Wine grape	cytosol	19.39	32.59
KRH39054	Soybean	cytosol	19.52	32.39
KRH39057	Soybean	cytosol	19.27	31.99
KRH39004	Soybean	cytosol	19.15	31.79
KRH39074	Soybean	cytosol	19.15	31.79
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.18	31.45
PGSC0003DMT400052977	Potato	cytosol	14.67	31.11
KRH39072	Soybean	cytosol	18.55	30.85
KRH08636	Soybean	cytosol	19.15	30.27
KRH09084	Soybean	plastid	18.67	30.14
PGSC0003DMT400008759	Potato	cytosol	11.64	30.09
Solyc06g005220.2.1	Tomato	cytosol	14.79	30.05
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.3	29.9
Bra026882.1-P	Field mustard	cytosol	19.27	29.78
Bra026884.1-P	Field mustard	cytosol	16.48	29.63
Bra027636.1-P	Field mustard	cytosol	11.64	29.63
Bra006187.1-P	Field mustard	plastid	10.42	29.55
KRH39066	Soybean	cytosol	19.88	29.55
KRH17148	Soybean	mitochondrion	19.52	29.54
VIT_14s0081g00120.t01	Wine grape	plastid	20.85	29.5
KRH09154	Soybean	mitochondrion	19.88	29.5
Solyc06g007810.1.1	Tomato	cytosol	9.58	29.48
KRH08639	Soybean	mitochondrion, plastid	20.12	29.38
KRH08628	Soybean	plastid	19.64	29.35
KRH48615	Soybean	mitochondrion	19.27	29.17
VIT_14s0081g00270.t01	Wine grape	plastid	20.48	29.14
KRH39050	Soybean	mitochondrion	18.79	29.14
KRH08277	Soybean	plastid	20.0	29.1
KRH40513	Soybean	plastid	12.36	29.06
Solyc06g007740.1.1	Tomato	cytosol	20.73	28.98
AT1G63330.2	Thale cress	cytosol	19.64	28.98
KRH08671	Soybean	cytosol, mitochondrion	19.39	28.93
AT5G16640.1	Thale cress	mitochondrion	17.58	28.77
KRH08607	Soybean	cytosol	19.27	28.34
PGSC0003DMT400008757	Potato	cytosol	17.09	28.31
PGSC0003DMT400053185	Potato	mitochondrion	20.12	28.14
KRH08625	Soybean	plastid	19.64	28.12
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.09	28.11
PGSC0003DMT400025074	Potato	cytosol	18.79	28.08
KRH31646	Soybean	cytosol	17.58	27.99
KRH09082	Soybean	cytosol	13.82	27.94
PGSC0003DMT400025067	Potato	cytosol	16.12	27.94
KRH40400	Soybean	plastid	19.52	27.9
KRH09121	Soybean	mitochondrion	18.06	27.9
Solyc06g007300.1.1	Tomato	extracellular	19.88	27.7
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.61	27.68
AT1G63150.1	Thale cress	mitochondrion	21.09	27.66
AT1G63130.1	Thale cress	mitochondrion	21.09	27.62
KRH41817	Soybean	mitochondrion	18.55	27.57
AT1G63400.1	Thale cress	cytosol, plastid	19.27	27.56
PGSC0003DMT400056665	Potato	mitochondrion	19.64	27.5
AT1G62930.1	Thale cress	plastid	20.97	27.5
AT1G62670.1	Thale cress	mitochondrion	20.97	27.46
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.21	27.39
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.33	27.24
AT1G62914.1	Thale cress	mitochondrion	17.33	27.08
PGSC0003DMT400056663	Potato	plastid	19.27	27.04
KRH25652	Soybean	cytosol, golgi	17.7	27.04
VIT_14s0030g02280.t01	Wine grape	plastid	18.3	26.92
Bra026971.1-P	Field mustard	mitochondrion	20.48	26.87
PGSC0003DMT400052971	Potato	mitochondrion	19.27	26.81
AT1G63080.3	Thale cress	mitochondrion	19.88	26.71
Bra026954.1-P	Field mustard	mitochondrion	20.97	26.62
AT1G12300.1	Thale cress	mitochondrion	20.48	26.53
AT1G62590.1	Thale cress	mitochondrion	20.36	26.5
PGSC0003DMT400008760	Potato	mitochondrion	18.79	26.45
AT1G62910.1	Thale cress	mitochondrion	20.24	26.42
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.88	26.41
Bra036649.1-P	Field mustard	cytosol	12.48	26.34
AT1G63070.1	Thale cress	mitochondrion	18.79	26.27
PGSC0003DMT400053182	Potato	cytosol	19.03	26.21
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.15	26.21
Bra031731.1-P	Field mustard	mitochondrion	16.12	26.18
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.52	26.07
Bra026958.1-P	Field mustard	mitochondrion	20.12	26.06
Bra016762.1-P	Field mustard	mitochondrion	19.15	26.03
Bra021192.1-P	Field mustard	plastid	15.88	25.99
KRH09095	Soybean	plastid	18.42	25.98
Solyc04g080120.1.1	Tomato	extracellular	19.27	25.98
Bra028267.1-P	Field mustard	mitochondrion	19.64	25.88
PGSC0003DMT400053556	Potato	mitochondrion	14.3	25.71
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.0	25.62
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.85	25.6
KRH09097	Soybean	plastid	18.06	25.56
Bra027029.1-P	Field mustard	mitochondrion	7.52	25.51
PGSC0003DMT400015293	Potato	mitochondrion	18.79	25.41
PGSC0003DMT400015298	Potato	mitochondrion	18.79	25.41
Bra036651.1-P	Field mustard	mitochondrion	16.36	25.23
AT1G62680.2	Thale cress	plastid	16.61	25.0
AT1G12700.2	Thale cress	cytosol	18.67	24.92
AT3G16710.1	Thale cress	mitochondrion	15.27	24.85
Bra026957.1-P	Field mustard	mitochondrion	18.06	24.71
Bra027026.1-P	Field mustard	mitochondrion	15.64	24.67
AT1G64580.1	Thale cress	mitochondrion	15.52	24.47
AT1G62720.1	Thale cress	mitochondrion	14.3	24.33
AT5G41170.1	Thale cress	mitochondrion	15.39	24.1
AT1G64583.1	Thale cress	mitochondrion	14.91	24.02
KRH08599	Soybean	cytosol, plastid	19.39	23.92
VIT_14s0030g02260.t01	Wine grape	cytosol	12.73	23.7
CDX68679	Canola	cytosol	3.27	23.48
Bra026401.1-P	Field mustard	plastid	15.03	23.18
AT4G26800.2	Thale cress	mitochondrion, plastid	14.3	22.96
AT1G06580.1	Thale cress	mitochondrion	13.82	22.8
AT1G64100.2	Thale cress	cytosol	21.21	21.71
KRH09085	Soybean	mitochondrion	18.18	21.31
Bra027726.1-P	Field mustard	mitochondrion	12.0	21.02
Bra027656.1-P	Field mustard	cytosol	22.3	19.55
KRH12873	Soybean	cytosol	15.76	18.68
KRH39064	Soybean	cytosol	21.09	17.96
Bra016758.1-P	Field mustard	plastid	20.12	14.32

Protein Annotations

EnsemblPlants:TraesCS1A01G067400.1	EnsemblPlantsGene:TraesCS1A01G067400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:49293371..49295848

Molecular Weight (calculated)

91596.7 Da

IEP (calculated)

8.497

GRAVY (calculated)

-0.036

Length

825 amino acids

Sequence
(BLAST)

001: MSRPRLRHCS CFTTPMSRIR FRRRLSSSTS RPTPSWSPRA AFAAATERVR DGTLSPQDAH HLFDELFQQA TPVPDRPLNG FLAALTRATP SEACRDGPAL
101: ALSLFNRVYR EEAGMRVAPP TIFTYGVLMN CCCRMRRPEL GLAFFGRLLR TGLKEDKIVA NTVLKCLCCA KRADDAVKVL LHTMTELGCV PDAFSYAIVL
201: KSLCDDNRSQ QALYLLRMMA KEEGVCSPDV VTYNTVIHGF FKEGKIGKAC NLFHEMTKQG FVPNVVTYNS VINALCKARA MDNAELFLRQ MVDNGVQPNK
301: VTYTSMIHGY STLGQWKEAT KLFREMTSSG LIPDIVTWNS FIDSLCKHGR SKEAAEIFHS MSAKGHKPDI ISYTTLLHGY ANEGSFPDMM SLFKSMEGDG
401: TVANCQFFNI LIDAYAKRGM MDEAMLIFTE MPGQGVNPNV VTYSTVIASL CRMGRLADAM NKFSEMIGTG VQPNTVVYHS LVQGLCTHGD LVKAKELISE
501: MMNKGIPRPN IAFFSSIVHS LCKEGRVMDA HHIFDLVKDI GERSDIIMFN TLIDGYCLVG EMGKAVSVLD VMISAGIEPD IFTYNTLVNG YFKSGRIDDG
601: LNLFREMSHK KIKPTTVTYN IILDGLFRAG RTVAAKKMLH ELIGCGTTVS LSTYNIILKG LCRNNCTDEA IVMFQKLHTI NVKFNITTLN TMINSMYTVQ
701: RREEAKDLFA AISDSGLVPN ASTYGIMIRN LLKEGSVEEA DSMFLSMERS GCAPCSRLLN DTIRTLLEKG EIVKAGNYMS KVDGKSISLE ASTCSLLLSL
801: FSGKGKYREQ IQLLPVKYQF FGGVS

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.