Factsheet for TraesCS6A01G015000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	67.47	86.15
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	49.16	80.63
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	70.12	76.78
HORVU1Hr1G018190.2	Barley	cytosol	50.84	74.04
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	84.1	48.81
Os08t0248400-01	Rice	mitochondrion	51.57	48.64
Zm00001d018982_P001	Maize	mitochondrion	40.48	48.0
Os08t0107700-01	Rice	cytosol, mitochondrion	42.89	47.59
TraesCS1A01G067700.1	Wheat	extracellular	38.55	47.48
Os10t0495100-01	Rice	cytosol, mitochondrion	52.29	47.07
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	80.48	46.78
Os10t0497432-01	Rice	mitochondrion	29.88	46.62
Os10t0499500-01	Rice	mitochondrion	51.08	41.9
Os10t0497366-00	Rice	mitochondrion	39.76	41.15
TraesCS1A01G073800.1	Wheat	mitochondrion	32.29	40.24
HORVU6Hr1G002890.6	Barley	cytosol, plastid	75.18	39.25
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	33.98	37.3
OQU88594	Sorghum	cytosol	44.82	35.63
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	41.45	34.19
EER95949	Sorghum	mitochondrion	53.49	33.48
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	39.04	33.47
Solyc06g007280.2.1	Tomato	cytosol	20.48	33.33
TraesCS1A01G074000.1	Wheat	mitochondrion	22.41	32.86
TraesCS1A01G066600.1	Wheat	mitochondrion	20.0	31.56
TraesCS1A01G055500.1	Wheat	mitochondrion	16.39	31.34
Os08t0107800-01	Rice	mitochondrion	46.27	30.77
KXG34536	Sorghum	mitochondrion	40.0	29.02
TraesCS6A01G083000.1	Wheat	cytosol	31.57	28.73
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	34.94	28.38
Os10t0501700-00	Rice	cytosol	30.84	28.19
Os10t0497300-01	Rice	mitochondrion	53.49	27.96
Os10t0495200-01	Rice	mitochondrion	51.81	27.49
Zm00001d009733_P001	Maize	cytosol	48.19	25.16
Os08t0110200-01	Rice	mitochondrion	46.75	24.31
KRH40513	Soybean	plastid	20.48	24.22
TraesCS1A01G067600.1	Wheat	mitochondrion	45.3	23.12
TraesCS1A01G073600.1	Wheat	mitochondrion	21.69	22.96
TraesCS1A01G054700.2	Wheat	mitochondrion	44.58	22.78
TraesCS2A01G526200.1	Wheat	golgi	37.11	22.61
VIT_12s0028g02320.t01	Wine grape	mitochondrion	25.78	22.43
TraesCS1A01G031700.1	Wheat	plastid	39.76	22.27
TraesCS2A01G530600.1	Wheat	cytosol	40.96	22.22
TraesCS1A01G067400.1	Wheat	mitochondrion	43.86	22.06
TraesCS1A01G054500.1	Wheat	mitochondrion	41.2	21.92
TraesCS2A01G531000.1	Wheat	golgi	35.66	21.8
TraesCS6A01G311600.1	Wheat	mitochondrion	43.86	21.77
Bra036649.1-P	Field mustard	cytosol	20.24	21.48
KRH39050	Soybean	mitochondrion	27.47	21.43
TraesCS1A01G055800.1	Wheat	mitochondrion	39.52	21.27
AT1G62914.1	Thale cress	mitochondrion	26.99	21.21
TraesCS1A01G067000.1	Wheat	mitochondrion	36.39	21.09
Zm00001d009735_P001	Maize	cytosol	49.16	20.97
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	36.14	20.92
KRH31646	Soybean	cytosol	26.02	20.85
TraesCS1A01G057300.1	Wheat	cytosol	35.9	20.75
TraesCS1A01G031600.1	Wheat	cytosol	32.53	20.39
TraesCS1A01G054800.1	Wheat	cytosol	28.43	20.27
AT1G63330.2	Thale cress	cytosol	27.23	20.21
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	25.54	20.19
Bra027029.1-P	Field mustard	mitochondrion	11.81	20.16
KRH39054	Soybean	cytosol	24.1	20.12
KRH39004	Soybean	cytosol	23.86	19.92
KRH09084	Soybean	plastid	24.34	19.77
KRH39057	Soybean	cytosol	23.61	19.72
KRH39112	Soybean	cytosol	23.61	19.72
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	23.86	19.6
KRH41817	Soybean	mitochondrion	26.02	19.46
Solyc06g005220.2.1	Tomato	cytosol	19.04	19.46
AT5G16640.1	Thale cress	mitochondrion	23.61	19.44
KRH39072	Soybean	cytosol	23.13	19.35
KRH39074	Soybean	cytosol	23.13	19.32
TraesCS6A01G014600.1	Wheat	cytosol	18.31	19.24
AT1G63400.1	Thale cress	cytosol, plastid	26.75	19.24
Solyc06g007740.1.1	Tomato	cytosol	27.23	19.15
Bra026882.1-P	Field mustard	cytosol	24.58	19.1
AT1G62930.1	Thale cress	plastid	28.92	19.08
AT3G22470.1	Thale cress	cytosol, mitochondrion	28.43	19.06
AT1G62670.1	Thale cress	mitochondrion	28.92	19.05
PGSC0003DMT400053556	Potato	mitochondrion	20.96	18.95
VIT_14s0081g00110.t01	Wine grape	cytosol	22.41	18.94
AT1G63150.1	Thale cress	mitochondrion	28.67	18.92
VIT_14s0030g02280.t01	Wine grape	plastid	25.54	18.89
VIT_14s0081g00270.t01	Wine grape	plastid	26.02	18.62
Bra016762.1-P	Field mustard	mitochondrion	27.23	18.62
Bra026971.1-P	Field mustard	mitochondrion	28.19	18.6
AT1G06580.1	Thale cress	mitochondrion	22.41	18.6
KRH08636	Soybean	cytosol	23.37	18.58
AT1G63080.3	Thale cress	mitochondrion	27.47	18.57
AT1G64580.1	Thale cress	mitochondrion	23.37	18.55
AT1G62910.1	Thale cress	mitochondrion	28.19	18.51
AT1G63070.1	Thale cress	mitochondrion	26.27	18.47
AT1G62590.1	Thale cress	mitochondrion	28.19	18.45
AT1G63130.1	Thale cress	mitochondrion	27.95	18.41
Bra026958.1-P	Field mustard	mitochondrion	28.19	18.37
AT1G12620.1	Thale cress	cytosol, mitochondrion	27.47	18.36
KRH17148	Soybean	mitochondrion	24.1	18.35
Bra026884.1-P	Field mustard	cytosol	20.24	18.3
PGSC0003DMT400008757	Potato	cytosol	21.93	18.27
AT1G12300.1	Thale cress	mitochondrion	27.95	18.21
VIT_14s0081g00120.t01	Wine grape	plastid	25.54	18.18
VIT_14s0081g00280.t01	Wine grape	mitochondrion	27.95	18.15
PGSC0003DMT400025074	Potato	cytosol	24.1	18.12
Bra028267.1-P	Field mustard	mitochondrion	27.23	18.05
KRH39066	Soybean	cytosol	24.1	18.02
KRH08607	Soybean	cytosol	24.34	18.0
Bra026954.1-P	Field mustard	mitochondrion	28.19	18.0
AT1G62720.1	Thale cress	mitochondrion	20.96	17.94
Solyc06g007300.1.1	Tomato	extracellular	25.54	17.91
Bra027636.1-P	Field mustard	cytosol	13.98	17.9
KRH48615	Soybean	mitochondrion	23.37	17.8
PGSC0003DMT400053185	Potato	mitochondrion	25.3	17.8
KRH09121	Soybean	mitochondrion	22.89	17.79
KRH08639	Soybean	mitochondrion, plastid	24.1	17.7
PGSC0003DMT400056665	Potato	mitochondrion	25.06	17.66
KRH08628	Soybean	plastid	23.37	17.57
TraesCS2A01G531100.1	Wheat	cytosol	23.86	17.4
Bra036651.1-P	Field mustard	mitochondrion	22.41	17.38
PGSC0003DMT400056663	Potato	plastid	24.58	17.35
KRH08277	Soybean	plastid	23.61	17.28
PGSC0003DMT400015293	Potato	mitochondrion	25.3	17.21
PGSC0003DMT400015298	Potato	mitochondrion	25.3	17.21
Bra025516.1-P	Field mustard	cytosol, mitochondrion	19.76	17.19
AT1G64583.1	Thale cress	mitochondrion	21.2	17.19
KRH40400	Soybean	plastid	23.86	17.16
Solyc04g080120.1.1	Tomato	extracellular	25.3	17.16
KRH09097	Soybean	plastid	24.1	17.15
Bra031731.1-P	Field mustard	mitochondrion	20.96	17.13
PGSC0003DMT400025087	Potato	endoplasmic reticulum	20.24	16.97
KRH09095	Soybean	plastid	23.86	16.92
Bra027026.1-P	Field mustard	mitochondrion	21.2	16.83
KRH08671	Soybean	cytosol, mitochondrion	22.41	16.82
AT3G16710.1	Thale cress	mitochondrion	20.48	16.77
AT4G26800.2	Thale cress	mitochondrion, plastid	20.72	16.73
AT5G41170.1	Thale cress	mitochondrion	21.2	16.7
AT1G12700.2	Thale cress	cytosol	24.82	16.67
Bra021192.1-P	Field mustard	plastid	20.24	16.67
KRH09154	Soybean	mitochondrion	22.17	16.55
AT1G12775.1	Thale cress	cytosol, mitochondrion	25.54	16.46
PGSC0003DMT400052977	Potato	cytosol	15.42	16.45
Bra027658.1-P	Field mustard	cytosol, mitochondrion	21.45	16.39
PGSC0003DMT400008760	Potato	mitochondrion	23.13	16.38
KRH25652	Soybean	cytosol, golgi	21.2	16.3
PGSC0003DMT400052971	Potato	mitochondrion	23.13	16.19
KRH08625	Soybean	plastid	22.41	16.15
PGSC0003DMT400053182	Potato	cytosol	23.13	16.03
PGSC0003DMT400025067	Potato	cytosol	18.31	15.97
Bra026957.1-P	Field mustard	mitochondrion	22.89	15.75
AT1G62680.2	Thale cress	plastid	20.72	15.69
KRH09082	Soybean	cytosol	15.42	15.69
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.83	15.07
KRH08599	Soybean	cytosol, plastid	23.61	14.65
Bra026401.1-P	Field mustard	plastid	18.07	14.02
Bra027726.1-P	Field mustard	mitochondrion	15.9	14.01
AT1G64100.2	Thale cress	cytosol	26.51	13.65
KRH09085	Soybean	mitochondrion	23.13	13.64
KRH12873	Soybean	cytosol	21.93	13.07
PGSC0003DMT400008759	Potato	cytosol	9.64	12.54
OQU88581	Sorghum	cytosol	32.05	12.24
Bra027656.1-P	Field mustard	cytosol	27.47	12.11
Bra006187.1-P	Field mustard	plastid	8.19	11.68
KRH39064	Soybean	cytosol	25.06	10.73
Solyc06g007810.1.1	Tomato	cytosol	6.27	9.7
Bra016758.1-P	Field mustard	plastid	26.51	9.49
VIT_14s0030g02260.t01	Wine grape	cytosol	10.12	9.48
TraesCS1A01G073700.1	Wheat	cytosol	8.43	9.09
TraesCS1A01G056000.1	Wheat	cytosol	2.89	2.99
TraesCS1A01G067800.1	Wheat	cytosol	0.24	0.27
CDX68679	Canola	cytosol	0.0	0.0
TraesCS1A01G055600.1	Wheat	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6A01G015000.1	EnsemblPlantsGene:TraesCS6A01G015000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr6A:-:7185555..7186802

Molecular Weight (calculated)

46230.6 Da

IEP (calculated)

7.058

GRAVY (calculated)

0.086

Length

415 amino acids

Sequence
(BLAST)

001: MSRRFPPGAM SRRILERKIQ DRYHAGHIGT HNALNLFDEL IQVAGPSSVR AINCLLTVVG RDCPVLGVSL FNRVARAKVP PHNITYSILV DCCCRAGCLD
101: LGHAAMGHVI KLGFTEAIVN FSHLLKAICA EKKTSYAMDI VLRIMPMFNC VPNIFSYSIV FKGLCNEKRS QEALELIQIM VEDGGCCRPD VVTYSTVIDG
201: LLKEGEVDQA YNLFSEMLRQ GVSPNVVTCS SIISGMCKAQ SVDKAKEVLQ QMFERGILPN ITTYNSLIQG YYSLGRCKEV DQIFKEMTIN GVQPDIITYN
301: IQMDYLCKSG QCAEARKIFD SMISLGQNPT ATTYSILLHG YAMEKSFHDM HCLIDLMVEN GISPDHYVYN ILISAYAKEE MVGEVMHIFT KMRQQGLNPD
401: AVSYGTVIDL LSRIG

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.