Factsheet for TraesCS1A01G055800.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G055600.1	Wheat	cytosol	34.24	81.23
TraesCS1A01G054700.2	Wheat	mitochondrion	79.64	75.62
TraesCS1A01G056000.1	Wheat	cytosol	38.78	74.38
TraesCS1A01G055500.1	Wheat	mitochondrion	20.88	74.19
TraesCS1A01G054800.1	Wheat	cytosol	55.38	73.37
TraesCS1A01G054500.1	Wheat	mitochondrion	72.76	71.92
TraesCS1A01G073800.1	Wheat	mitochondrion	29.05	67.27
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	62.52	67.22
TraesCS1A01G067800.1	Wheat	cytosol	32.56	67.11
TraesCS1A01G067600.1	Wheat	mitochondrion	69.78	66.17
TraesCS1A01G067400.1	Wheat	mitochondrion	68.09	63.64
TraesCS1A01G067000.1	Wheat	mitochondrion	59.01	63.55
TraesCS1A01G073600.1	Wheat	mitochondrion	32.17	63.27
TraesCS1A01G066600.1	Wheat	mitochondrion	21.53	63.12
TraesCS1A01G057300.1	Wheat	cytosol	58.63	62.95
TraesCS6A01G311600.1	Wheat	mitochondrion	67.44	62.2
TraesCS1A01G074000.1	Wheat	mitochondrion	22.83	62.19
TraesCS1A01G073700.1	Wheat	cytosol	30.74	61.56
TraesCS1A01G031600.1	Wheat	cytosol	48.12	56.04
TraesCS1A01G067700.1	Wheat	extracellular	24.38	55.79
Zm00001d007531_P001	Maize	plastid	56.16	53.19
KXG28799	Sorghum	plastid	52.4	53.16
TraesCS1A01G031700.1	Wheat	plastid	50.97	53.04
Zm00001d007548_P001	Maize	plastid	55.9	52.95
Zm00001d007534_P001	Maize	plastid	53.18	52.77
Zm00001d007559_P001	Maize	plastid	55.77	52.63
TraesCS2A01G530600.1	Wheat	cytosol	52.01	52.42
Zm00001d007555_P001	Maize	plastid	54.99	52.09
TraesCS2A01G531000.1	Wheat	golgi	45.66	51.84
TraesCS2A01G526200.1	Wheat	golgi	45.78	51.84
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	34.11	51.47
TraesCS2A01G531100.1	Wheat	cytosol	37.35	50.62
KXG35774	Sorghum	cytosol, mitochondrion	30.35	49.47
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	48.25	48.56
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	23.48	47.88
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	28.92	46.07
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	29.83	45.73
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	14.4	43.87
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	40.47	43.7
TraesCS6A01G014600.1	Wheat	cytosol	21.53	42.03
Os04t0351333-00	Rice	cytosol	47.08	41.3
Os04t0349600-01	Rice	plastid	20.36	40.57
TraesCS6A01G015000.1	Wheat	mitochondrion	21.27	39.52
TraesCS6A01G083000.1	Wheat	cytosol	22.44	37.94
KRH39054	Soybean	cytosol	18.81	29.18
KRH39112	Soybean	cytosol	18.81	29.18
KRH39004	Soybean	cytosol	18.55	28.77
KRH39057	Soybean	cytosol	18.55	28.77
KRH39074	Soybean	cytosol	18.42	28.57
KRH39072	Soybean	cytosol	18.16	28.23
KRH17148	Soybean	mitochondrion	19.84	28.07
KRH40513	Soybean	plastid	12.71	27.92
Solyc06g007280.2.1	Tomato	cytosol	9.21	27.84
KRH09084	Soybean	plastid	18.03	27.2
KRH08636	Soybean	cytosol	18.29	27.01
VIT_14s0081g00110.t01	Wine grape	cytosol	17.12	26.88
AT1G63330.2	Thale cress	cytosol	19.46	26.83
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	17.51	26.73
KRH48615	Soybean	mitochondrion	18.81	26.61
Solyc06g005220.2.1	Tomato	cytosol	14.01	26.6
KRH39066	Soybean	cytosol	19.07	26.49
KRH08628	Soybean	plastid	18.81	26.27
KRH08671	Soybean	cytosol, mitochondrion	18.81	26.22
CDX68679	Canola	cytosol	3.89	26.09
KRH08607	Soybean	cytosol	18.94	26.02
KRH08639	Soybean	mitochondrion, plastid	19.07	26.02
Bra027636.1-P	Field mustard	cytosol	10.89	25.93
KRH09154	Soybean	mitochondrion	18.68	25.9
KRH40400	Soybean	plastid	19.33	25.82
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.95	25.79
KRH08277	Soybean	plastid	18.94	25.75
KRH08625	Soybean	plastid	19.07	25.52
PGSC0003DMT400052977	Potato	cytosol	12.84	25.45
Bra006187.1-P	Field mustard	plastid	9.47	25.09
AT1G62670.1	Thale cress	mitochondrion	20.49	25.08
Bra026884.1-P	Field mustard	cytosol	14.92	25.05
AT5G16640.1	Thale cress	mitochondrion	16.34	25.0
KRH25652	Soybean	cytosol, golgi	17.51	25.0
AT1G62930.1	Thale cress	plastid	20.36	24.96
AT1G63130.1	Thale cress	mitochondrion	20.36	24.92
AT1G63070.1	Thale cress	mitochondrion	18.94	24.75
AT1G62910.1	Thale cress	mitochondrion	20.23	24.68
AT1G63080.3	Thale cress	mitochondrion	19.59	24.59
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	16.73	24.57
Bra026882.1-P	Field mustard	cytosol	16.99	24.53
KRH09121	Soybean	mitochondrion	16.99	24.53
VIT_14s0081g00120.t01	Wine grape	plastid	18.55	24.53
Bra026958.1-P	Field mustard	mitochondrion	20.1	24.33
PGSC0003DMT400008757	Potato	cytosol	15.69	24.3
AT1G62590.1	Thale cress	mitochondrion	19.97	24.29
VIT_14s0081g00270.t01	Wine grape	plastid	18.16	24.14
AT1G63400.1	Thale cress	cytosol, plastid	18.03	24.09
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.33	24.07
Solyc06g007740.1.1	Tomato	cytosol	18.42	24.07
KRH09082	Soybean	cytosol	12.71	24.02
AT1G12300.1	Thale cress	mitochondrion	19.84	24.02
KRH39050	Soybean	mitochondrion	16.47	23.87
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.2	23.83
Bra036649.1-P	Field mustard	cytosol	12.06	23.79
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.73	23.76
KRH31646	Soybean	cytosol	15.95	23.75
AT1G63150.1	Thale cress	mitochondrion	19.33	23.69
Bra026971.1-P	Field mustard	mitochondrion	19.33	23.69
Bra021192.1-P	Field mustard	plastid	15.43	23.61
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.71	23.6
Bra031731.1-P	Field mustard	mitochondrion	15.43	23.43
KRH41817	Soybean	mitochondrion	16.73	23.24
PGSC0003DMT400053185	Potato	mitochondrion	17.77	23.22
PGSC0003DMT400008759	Potato	cytosol	9.6	23.2
Bra028267.1-P	Field mustard	mitochondrion	18.81	23.16
Solyc06g007810.1.1	Tomato	cytosol	8.04	23.13
Bra026954.1-P	Field mustard	mitochondrion	19.46	23.08
PGSC0003DMT400025074	Potato	cytosol	16.47	23.01
Bra036651.1-P	Field mustard	mitochondrion	15.95	22.99
PGSC0003DMT400056665	Potato	mitochondrion	17.51	22.92
Bra016762.1-P	Field mustard	mitochondrion	18.03	22.9
PGSC0003DMT400025067	Potato	cytosol	14.14	22.9
AT1G64580.1	Thale cress	mitochondrion	15.43	22.75
AT1G62914.1	Thale cress	mitochondrion	15.56	22.73
VIT_14s0030g02280.t01	Wine grape	plastid	16.47	22.64
PGSC0003DMT400056663	Potato	plastid	17.25	22.62
AT1G64583.1	Thale cress	mitochondrion	14.92	22.46
VIT_14s0081g00280.t01	Wine grape	mitochondrion	18.55	22.38
KRH09097	Soybean	plastid	16.86	22.3
Solyc06g007300.1.1	Tomato	extracellular	17.12	22.3
Bra026401.1-P	Field mustard	plastid	15.43	22.24
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.75	22.22
KRH09095	Soybean	plastid	16.86	22.22
PGSC0003DMT400025087	Potato	endoplasmic reticulum	14.27	22.22
Solyc04g080120.1.1	Tomato	extracellular	17.64	22.22
PGSC0003DMT400008760	Potato	mitochondrion	16.73	22.01
AT3G16710.1	Thale cress	mitochondrion	14.4	21.89
AT1G62720.1	Thale cress	mitochondrion	13.62	21.65
AT1G62680.2	Thale cress	plastid	15.3	21.53
PGSC0003DMT400052971	Potato	mitochondrion	16.47	21.42
Bra027026.1-P	Field mustard	mitochondrion	14.53	21.41
PGSC0003DMT400053182	Potato	cytosol	16.6	21.37
AT1G12700.2	Thale cress	cytosol	17.12	21.36
Bra027726.1-P	Field mustard	mitochondrion	12.97	21.23
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.49	21.18
PGSC0003DMT400015293	Potato	mitochondrion	16.73	21.15
PGSC0003DMT400015298	Potato	mitochondrion	16.73	21.15
AT4G26800.2	Thale cress	mitochondrion, plastid	14.01	21.01
Bra027029.1-P	Field mustard	mitochondrion	6.61	20.99
Bra026957.1-P	Field mustard	mitochondrion	16.34	20.9
KRH08599	Soybean	cytosol, plastid	18.03	20.78
AT5G41170.1	Thale cress	mitochondrion	14.01	20.49
AT1G64100.2	Thale cress	cytosol	21.4	20.47
AT1G06580.1	Thale cress	mitochondrion	13.23	20.4
KRH09085	Soybean	mitochondrion	17.64	19.32
VIT_14s0030g02260.t01	Wine grape	cytosol	11.02	19.19
PGSC0003DMT400053556	Potato	mitochondrion	11.15	18.74
Bra027656.1-P	Field mustard	cytosol	22.44	18.38
KRH12873	Soybean	cytosol	14.53	16.09
KRH39064	Soybean	cytosol	19.97	15.89
Bra016758.1-P	Field mustard	plastid	18.16	12.08

Protein Annotations

EnsemblPlants:TraesCS1A01G055800.1	EnsemblPlantsGene:TraesCS1A01G055800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1A:+:36613076..36615874

Molecular Weight (calculated)

85026.7 Da

IEP (calculated)

8.250

GRAVY (calculated)

0.021

Length

771 amino acids

Sequence
(BLAST)

001: MSNLRLLRRS SSSMSTTTSP PSRSWSPHSA FAAATERVRA GTLSQDDAHH LFDELLRQAT PVHERSLNGF LAALARATSS AACIRDGPAL AIALFNRVCR
101: EQAGPRVAPL TVHTYGILME CCCRAGHPEL GLAIFSRLLR TGLKTNEIVG STFLKCLSYT KRTDEALNVL LHRMPELGCV PNAFSYSIVL KSLCDNSMSQ
201: RALDLLQRMA KEGGGCFLNV VTYSTVIHGF FKEGEIGKAC SLFHEMMQQG IEPDVWTYNS IIDALCKARA MDKAELVLRQ MVAKGAQPDT VTYNCMINGY
301: ATSGRLKEAA KMFREMKSRG VTPNIVTCGS LMTSLCKHGR SKEARQIFDS MTAKGHRANV VSYSILLHGC ADITEMREKG VSPDVVTYTT VIAALSRMGR
401: LTDAVDKFDE MIAMGVQPSI PVYQSLIQGF CIDGDLVKAK ELVSEMMNKG IPCPNIVFFN SVINSLCKEG RVMDAHDIFD LVIDIGERPD TITFSSLIDG
501: YCLVGKMDKA FGMLNAMESV GVEPDIVTYS TLLDGYFKNG RIDDGLTLFR EMPRKRIKPD TVTYGIILDG LFRSGRTVAA WKMFHEMIES GTTVTFSIYA
601: IILGGFCRNN CADEAITLFH KLGAMNVKFN IAIVNTMINA MYKVGRREEA KELFAGILAR GLVPNESTYG VMIKNLLKDG VVEDANNVFS SMDKSGIVPS
701: SRLINDIIRL LLEKGEIAKA GYYLSKVDGK SISLEASTTS LMFSLFSMKG KYKEHMKLLP AKYQFFDELV D

Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)

001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.