Factsheet for TraesCS6A01G083000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G114300.1	Wheat	cytosol	81.8	95.89
HORVU6Hr1G014310.1	Barley	mitochondrion	89.91	59.68
TraesCS6A01G014600.1	Wheat	cytosol	46.71	53.92
Os10t0501700-00	Rice	cytosol	40.79	40.97
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	62.06	39.64
Os10t0497366-00	Rice	mitochondrion	32.24	36.66
TraesCS6D01G076500.1	Wheat	plastid	36.4	36.64
TraesCS2A01G531100.1	Wheat	cytosol	42.32	33.92
TraesCS1A01G073700.1	Wheat	cytosol	27.63	32.73
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	35.75	31.9
TraesCS6A01G015000.1	Wheat	mitochondrion	28.73	31.57
KXG34536	Sorghum	mitochondrion	39.04	31.12
TraesCS1A01G054800.1	Wheat	cytosol	38.6	30.24
TraesCS2A01G526200.1	Wheat	golgi	43.64	29.22
TraesCS1A01G031600.1	Wheat	cytosol	41.45	28.55
TraesCS2A01G531000.1	Wheat	golgi	41.89	28.13
TraesCS1A01G056000.1	Wheat	cytosol	24.78	28.11
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	23.25	28.04
Zm00001d009733_P001	Maize	cytosol	48.68	27.92
TraesCS1A01G067800.1	Wheat	cytosol	22.81	27.81
EER95949	Sorghum	mitochondrion	40.35	27.75
Os08t0107800-01	Rice	mitochondrion	37.94	27.72
Os10t0497300-01	Rice	mitochondrion	48.03	27.58
Os10t0495200-01	Rice	mitochondrion	46.71	27.24
OQU88594	Sorghum	cytosol	30.92	27.01
TraesCS1A01G057300.1	Wheat	cytosol	42.32	26.88
Os10t0495100-01	Rice	cytosol, mitochondrion	26.75	26.46
TraesCS1A01G055600.1	Wheat	cytosol	18.86	26.46
TraesCS1A01G067000.1	Wheat	mitochondrion	41.23	26.26
Bra027029.1-P	Field mustard	mitochondrion	13.82	25.93
Solyc06g007810.1.1	Tomato	cytosol	15.13	25.75
TraesCS2A01G530600.1	Wheat	cytosol	42.98	25.62
PGSC0003DMT400052977	Potato	cytosol	21.71	25.45
PGSC0003DMT400008759	Potato	cytosol	17.54	25.08
Bra027636.1-P	Field mustard	cytosol	17.76	25.0
TraesCS1A01G067700.1	Wheat	extracellular	18.42	24.93
Zm00001d018982_P001	Maize	mitochondrion	19.08	24.86
TraesCS1A01G067600.1	Wheat	mitochondrion	42.98	24.11
TraesCS1A01G054500.1	Wheat	mitochondrion	40.57	23.72
Solyc06g005220.2.1	Tomato	cytosol	21.05	23.65
CDX68679	Canola	cytosol	5.92	23.48
TraesCS1A01G067400.1	Wheat	mitochondrion	42.11	23.27
TraesCS1A01G031700.1	Wheat	plastid	37.72	23.21
TraesCS1A01G054700.2	Wheat	mitochondrion	41.23	23.15
Os08t0110200-01	Rice	mitochondrion	40.35	23.06
TraesCS6A01G311600.1	Wheat	mitochondrion	42.11	22.97
Zm00001d009735_P001	Maize	cytosol	48.25	22.61
TraesCS1A01G055800.1	Wheat	mitochondrion	37.94	22.44
Solyc06g007280.2.1	Tomato	cytosol	12.5	22.35
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	34.65	22.04
Os10t0499500-01	Rice	mitochondrion	24.12	21.74
Bra006187.1-P	Field mustard	plastid	13.82	21.65
Os08t0248400-01	Rice	mitochondrion	20.83	21.59
Bra036649.1-P	Field mustard	cytosol	18.2	21.23
KRH09082	Soybean	cytosol	18.64	20.83
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	22.81	20.68
VIT_14s0081g00110.t01	Wine grape	cytosol	21.93	20.37
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	21.49	20.25
PGSC0003DMT400025067	Potato	cytosol	20.83	19.96
Bra026884.1-P	Field mustard	cytosol	19.96	19.83
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.61	19.71
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	21.49	19.41
PGSC0003DMT400025087	Potato	endoplasmic reticulum	21.05	19.39
KRH31646	Soybean	cytosol	21.93	19.3
KRH39072	Soybean	cytosol	20.61	18.95
KRH39057	Soybean	cytosol	20.61	18.91
KRH39004	Soybean	cytosol	20.39	18.71
KRH40513	Soybean	plastid	14.25	18.52
KRH39054	Soybean	cytosol	20.18	18.51
KRH39074	Soybean	cytosol	20.18	18.51
KRH39112	Soybean	cytosol	20.18	18.51
VIT_14s0030g02260.t01	Wine grape	cytosol	17.98	18.51
PGSC0003DMT400008757	Potato	cytosol	20.18	18.47
OQU88581	Sorghum	cytosol	43.86	18.4
KRH08636	Soybean	cytosol	21.05	18.39
Bra026882.1-P	Field mustard	cytosol	21.49	18.35
AT3G16710.1	Thale cress	mitochondrion	20.39	18.34
Solyc06g007740.1.1	Tomato	cytosol	23.68	18.31
AT5G16640.1	Thale cress	mitochondrion	20.18	18.25
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.83	18.1
KRH08671	Soybean	cytosol, mitochondrion	21.93	18.08
PGSC0003DMT400025074	Potato	cytosol	21.71	17.93
KRH39050	Soybean	mitochondrion	20.83	17.86
Bra025516.1-P	Field mustard	cytosol, mitochondrion	18.64	17.82
KRH40400	Soybean	plastid	22.37	17.68
VIT_14s0081g00120.t01	Wine grape	plastid	22.59	17.67
Bra021192.1-P	Field mustard	plastid	19.52	17.66
KRH41817	Soybean	mitochondrion	21.49	17.66
AT1G63330.2	Thale cress	cytosol	21.49	17.53
VIT_14s0081g00280.t01	Wine grape	mitochondrion	24.56	17.53
AT1G62720.1	Thale cress	mitochondrion	18.64	17.53
KRH08607	Soybean	cytosol	21.49	17.47
KRH08639	Soybean	mitochondrion, plastid	21.49	17.35
KRH08277	Soybean	plastid	21.49	17.28
KRH08628	Soybean	plastid	20.83	17.21
Bra027026.1-P	Field mustard	mitochondrion	19.74	17.21
Bra036651.1-P	Field mustard	mitochondrion	20.18	17.2
Solyc06g007300.1.1	Tomato	extracellular	22.15	17.06
PGSC0003DMT400056665	Potato	mitochondrion	21.93	16.98
AT1G62680.2	Thale cress	plastid	20.39	16.97
PGSC0003DMT400053185	Potato	mitochondrion	21.93	16.95
Bra031731.1-P	Field mustard	mitochondrion	18.86	16.93
VIT_14s0081g00270.t01	Wine grape	plastid	21.49	16.9
KRH17148	Soybean	mitochondrion	20.18	16.88
Os08t0107700-01	Rice	cytosol, mitochondrion	13.82	16.84
AT1G64580.1	Thale cress	mitochondrion	19.3	16.83
KRH48615	Soybean	mitochondrion	19.96	16.7
PGSC0003DMT400052971	Potato	mitochondrion	21.71	16.69
AT5G41170.1	Thale cress	mitochondrion	19.08	16.51
PGSC0003DMT400056663	Potato	plastid	21.27	16.5
KRH08625	Soybean	plastid	20.83	16.49
KRH25652	Soybean	cytosol, golgi	19.52	16.48
AT1G06580.1	Thale cress	mitochondrion	17.98	16.4
PGSC0003DMT400008760	Potato	mitochondrion	21.05	16.38
AT1G64583.1	Thale cress	mitochondrion	18.2	16.21
AT1G62670.1	Thale cress	mitochondrion	22.37	16.19
KRH09154	Soybean	mitochondrion	19.74	16.19
PGSC0003DMT400015293	Potato	mitochondrion	21.49	16.07
PGSC0003DMT400015298	Potato	mitochondrion	21.49	16.07
KRH39066	Soybean	cytosol	19.52	16.04
AT1G62930.1	Thale cress	plastid	21.71	15.74
KRH09121	Soybean	mitochondrion	18.42	15.73
Bra026401.1-P	Field mustard	plastid	18.42	15.7
Solyc04g080120.1.1	Tomato	extracellular	21.05	15.69
KRH09084	Soybean	plastid	17.54	15.66
Bra027658.1-P	Field mustard	cytosol, mitochondrion	18.64	15.65
AT1G63080.3	Thale cress	mitochondrion	21.05	15.64
AT1G63070.1	Thale cress	mitochondrion	20.18	15.59
AT1G63130.1	Thale cress	mitochondrion	21.49	15.56
Bra026958.1-P	Field mustard	mitochondrion	21.71	15.54
PGSC0003DMT400053182	Potato	cytosol	20.39	15.53
AT1G62590.1	Thale cress	mitochondrion	21.49	15.46
AT4G26800.2	Thale cress	mitochondrion, plastid	17.11	15.18
AT1G63400.1	Thale cress	cytosol, plastid	19.08	15.08
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.23	15.07
PGSC0003DMT400053556	Potato	mitochondrion	15.13	15.03
AT1G62910.1	Thale cress	mitochondrion	20.83	15.03
Bra026971.1-P	Field mustard	mitochondrion	20.61	14.94
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.18	14.86
TraesCS1A01G073600.1	Wheat	mitochondrion	12.72	14.8
AT1G63150.1	Thale cress	mitochondrion	20.39	14.79
VIT_14s0030g02280.t01	Wine grape	plastid	17.98	14.62
KRH08599	Soybean	cytosol, plastid	21.27	14.5
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.74	14.49
Bra026954.1-P	Field mustard	mitochondrion	20.61	14.46
AT1G12300.1	Thale cress	mitochondrion	20.18	14.44
Bra026957.1-P	Field mustard	mitochondrion	19.08	14.43
KRH09097	Soybean	plastid	18.2	14.24
Bra027726.1-P	Field mustard	mitochondrion	14.69	14.23
Bra028267.1-P	Field mustard	mitochondrion	19.52	14.22
KRH09095	Soybean	plastid	18.2	14.19
AT1G12700.2	Thale cress	cytosol	19.08	14.08
Bra016762.1-P	Field mustard	mitochondrion	18.42	13.84
AT1G62914.1	Thale cress	mitochondrion	15.79	13.64
AT1G12775.1	Thale cress	cytosol, mitochondrion	18.42	13.04
KRH12873	Soybean	cytosol	19.74	12.93
AT1G64100.2	Thale cress	cytosol	21.49	12.16
TraesCS1A01G073800.1	Wheat	mitochondrion	8.55	11.71
Bra027656.1-P	Field mustard	cytosol	23.46	11.37
KRH09085	Soybean	mitochondrion	17.32	11.22
KRH39064	Soybean	cytosol	20.39	9.6
Bra016758.1-P	Field mustard	plastid	19.96	7.85
TraesCS1A01G074000.1	Wheat	mitochondrion	3.95	6.36
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	3.51	6.32
Os10t0497432-01	Rice	mitochondrion	1.75	3.01
TraesCS1A01G066600.1	Wheat	mitochondrion	0.44	0.76
TraesCS1A01G055500.1	Wheat	mitochondrion	0.22	0.46

Protein Annotations

EnsemblPlants:TraesCS6A01G083000.1	EnsemblPlantsGene:TraesCS6A01G083000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR44149	PANTHER:PTHR44149:SF1
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:51880136..51881506

Molecular Weight (calculated)

51572.1 Da

IEP (calculated)

5.867

GRAVY (calculated)

0.056

Length

456 amino acids

Sequence
(BLAST)

001: MCKVQAMDEA EEVLQQMFDT GILPNITTYN SLIHGYYSSG QCEQVAHIFK KMSRNGVQPD IATYTIQMDY LCKSRRFAGA RTIFDSMAGK DQKPNVTSYS
101: ILLHAYAMEQ SVHDMHCLIE LMVENGIAPN HSVYNILIVA YAKGKMFDEV MHIFTKMRQQ GLNPNAASYG TVINLLCSIG RMDDAMLQFN QMITEELAPD
201: IIVFNTLISG FCSCGKWEKV HELLAEMLNR GIYPDNVFFN TIMDHLCKNG RVMESQDLAD LMIHMGLKPD MHTYNTLMGG YFFIGKMDEV RKLLDHMVSI
301: GMEPDVVTYN TLIDGYFKNG MIDDALAIFS EMLDKKVKPC VITYNTVLHG LFHTGRTVAA NELYLRMIDS GICVDIVTYN IILSGLCRNN CVDEALRMFQ
401: NLCSTNYQLE IRTYNIMISA LLKVGRKEEA TGLLDGISAK GFVLDAVTYR LMIQSF

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.