Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G137900.1 | |
TraesCS4B01G148100.1 | |
TraesCS4D01G153300.1 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G62670.1 | TraesCS4A01G137900.1 | AT4G26630.1 | 25387881 |
AT1G62670.1 | TraesCS4B01G148100.1 | AT4G26630.1 | 25387881 |
AT1G62670.1 | TraesCS4D01G153300.1 | AT4G26630.1 | 25387881 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS1D01G055300.1 | Wheat | cytosol | 72.31 | 91.26 |
TraesCS1A01G054700.2 | Wheat | mitochondrion | 89.87 | 86.33 |
TraesCS1A01G055600.1 | Wheat | cytosol | 34.23 | 82.15 |
TraesCS1A01G056000.1 | Wheat | cytosol | 38.97 | 75.62 |
TraesCS1A01G054800.1 | Wheat | cytosol | 56.41 | 75.6 |
TraesCS1A01G055800.1 | Wheat | mitochondrion | 71.92 | 72.76 |
TraesCS1A01G067700.1 | Wheat | extracellular | 30.26 | 70.03 |
TraesCS1B01G071600.1 | Wheat | mitochondrion | 75.9 | 69.81 |
TraesCS1A01G057400.1 | Wheat | mitochondrion, plastid | 63.21 | 68.76 |
TraesCS1A01G057300.1 | Wheat | cytosol | 62.95 | 68.38 |
TraesCS1A01G073600.1 | Wheat | mitochondrion | 34.23 | 68.11 |
TraesCS1A01G073700.1 | Wheat | cytosol | 32.82 | 66.49 |
TraesCS1A01G067600.1 | Wheat | mitochondrion | 68.08 | 65.31 |
TraesCS1A01G067800.1 | Wheat | cytosol | 31.28 | 65.24 |
TraesCS1A01G067000.1 | Wheat | mitochondrion | 59.87 | 65.22 |
TraesCS1A01G067400.1 | Wheat | mitochondrion | 67.31 | 63.64 |
TraesCS6A01G311600.1 | Wheat | mitochondrion | 65.51 | 61.12 |
TraesCS1A01G073800.1 | Wheat | mitochondrion | 25.51 | 59.76 |
TraesCS1A01G031600.1 | Wheat | cytosol | 50.64 | 59.67 |
TraesCS2A01G530300.1 | Wheat | mitochondrion, plastid | 36.41 | 55.58 |
TraesCS2A01G531000.1 | Wheat | golgi | 48.33 | 55.52 |
TraesCS2A01G526200.1 | Wheat | golgi | 48.33 | 55.36 |
TraesCS2A01G531100.1 | Wheat | cytosol | 40.13 | 55.01 |
TraesCS1A01G055500.1 | Wheat | mitochondrion | 15.13 | 54.38 |
TraesCS6A01G099100.1 | Wheat | cytosol, mitochondrion | 25.64 | 52.91 |
TraesCS1A01G031700.1 | Wheat | plastid | 50.26 | 52.9 |
Zm00001d007559_P001 | Maize | plastid | 54.87 | 52.39 |
Zm00001d007531_P001 | Maize | plastid | 54.62 | 52.33 |
Zm00001d007548_P001 | Maize | plastid | 54.62 | 52.33 |
TraesCS2A01G530600.1 | Wheat | cytosol | 51.28 | 52.29 |
KXG28799 | Sorghum | plastid | 50.9 | 52.24 |
Zm00001d007555_P001 | Maize | plastid | 54.1 | 51.84 |
Zm00001d007534_P001 | Maize | plastid | 51.54 | 51.74 |
TraesCS1A01G066600.1 | Wheat | mitochondrion | 17.18 | 50.95 |
KXG35774 | Sorghum | cytosol, mitochondrion | 30.38 | 50.11 |
TraesCS1A01G074000.1 | Wheat | mitochondrion | 17.82 | 49.12 |
Os04t0350000-02 | Rice | cytosol, mitochondrion, plastid | 47.69 | 48.56 |
TraesCS6A01G101100.1 | Wheat | mitochondrion, plastid | 31.03 | 48.11 |
TraesCS6A01G099300.1 | Wheat | cytosol, mitochondrion | 29.1 | 46.9 |
TraesCS6A01G014600.1 | Wheat | cytosol | 23.08 | 45.57 |
TraesCS6A01G014800.1 | Wheat | cytosol, mitochondrion | 40.0 | 43.7 |
Os04t0351333-00 | Rice | cytosol | 48.85 | 43.34 |
TraesCS6A01G015000.1 | Wheat | mitochondrion | 21.92 | 41.2 |
TraesCS6A01G083000.1 | Wheat | cytosol | 23.72 | 40.57 |
TraesCS6A01G014500.1 | Wheat | cytosol, mitochondrion | 12.44 | 38.34 |
Os04t0349600-01 | Rice | plastid | 18.59 | 37.47 |
KRH39054 | Soybean | cytosol | 20.9 | 32.8 |
KRH39074 | Soybean | cytosol | 20.64 | 32.39 |
KRH39112 | Soybean | cytosol | 20.26 | 31.79 |
KRH39004 | Soybean | cytosol | 20.0 | 31.39 |
KRH39057 | Soybean | cytosol | 20.0 | 31.39 |
Solyc06g007280.2.1 | Tomato | cytosol | 10.26 | 31.37 |
KRH39072 | Soybean | cytosol | 19.62 | 30.85 |
AT1G63330.2 | Thale cress | cytosol | 21.79 | 30.41 |
VIT_12s0028g02320.t01 | Wine grape | mitochondrion | 18.59 | 30.4 |
VIT_14s0081g00110.t01 | Wine grape | cytosol | 18.97 | 30.14 |
Bra027636.1-P | Field mustard | cytosol | 12.44 | 29.94 |
KRH09084 | Soybean | plastid | 19.49 | 29.75 |
KRH40513 | Soybean | plastid | 13.33 | 29.63 |
KRH08635 | Soybean | cytosol, golgi, mitochondrion, plastid | 19.1 | 29.5 |
Solyc06g005220.2.1 | Tomato | cytosol | 15.26 | 29.31 |
KRH17148 | Soybean | mitochondrion | 20.38 | 29.17 |
Solyc06g007810.1.1 | Tomato | cytosol | 10.0 | 29.1 |
PGSC0003DMT400052977 | Potato | cytosol | 14.23 | 28.53 |
KRH39066 | Soybean | cytosol | 20.13 | 28.29 |
Bra026882.1-P | Field mustard | cytosol | 19.36 | 28.28 |
Bra006187.1-P | Field mustard | plastid | 10.51 | 28.18 |
KRH08636 | Soybean | cytosol | 18.85 | 28.16 |
Bra027029.1-P | Field mustard | mitochondrion | 8.72 | 27.98 |
KRH09082 | Soybean | cytosol | 14.62 | 27.94 |
PGSC0003DMT400008759 | Potato | cytosol | 11.41 | 27.9 |
Bra026884.1-P | Field mustard | cytosol | 16.41 | 27.89 |
KRH48615 | Soybean | mitochondrion | 19.36 | 27.71 |
PGSC0003DMT400025087 | Potato | endoplasmic reticulum | 17.56 | 27.68 |
VIT_14s0081g00120.t01 | Wine grape | plastid | 20.51 | 27.44 |
PGSC0003DMT400025067 | Potato | cytosol | 16.67 | 27.31 |
PGSC0003DMT400008757 | Potato | cytosol | 17.44 | 27.31 |
KRH08628 | Soybean | plastid | 19.23 | 27.17 |
KRH09121 | Soybean | mitochondrion | 18.59 | 27.15 |
AT1G62670.1 | Thale cress | mitochondrion | 21.92 | 27.14 |
Bra036649.1-P | Field mustard | cytosol | 13.59 | 27.11 |
KRH00678 | Soybean | endoplasmic reticulum, extracellular, plastid | 18.21 | 27.05 |
AT5G16640.1 | Thale cress | mitochondrion | 17.44 | 26.98 |
KRH08277 | Soybean | plastid | 19.62 | 26.98 |
KRH08671 | Soybean | cytosol, mitochondrion | 19.1 | 26.94 |
KRH08607 | Soybean | cytosol | 19.36 | 26.92 |
AT1G62930.1 | Thale cress | plastid | 21.41 | 26.55 |
KRH25652 | Soybean | cytosol, golgi | 18.33 | 26.48 |
KRH08639 | Soybean | mitochondrion, plastid | 19.1 | 26.37 |
AT1G62590.1 | Thale cress | mitochondrion | 21.41 | 26.34 |
PGSC0003DMT400025074 | Potato | cytosol | 18.59 | 26.27 |
AT3G22470.1 | Thale cress | cytosol, mitochondrion | 20.77 | 26.17 |
AT1G63400.1 | Thale cress | cytosol, plastid | 19.36 | 26.17 |
CDX68679 | Canola | cytosol | 3.85 | 26.09 |
KRH31646 | Soybean | cytosol | 17.31 | 26.06 |
KRH41817 | Soybean | mitochondrion | 18.46 | 25.95 |
KRH09154 | Soybean | mitochondrion | 18.46 | 25.9 |
AT1G63080.3 | Thale cress | mitochondrion | 20.38 | 25.9 |
AT1G63130.1 | Thale cress | mitochondrion | 20.9 | 25.87 |
VIT_14s0081g00270.t01 | Wine grape | plastid | 19.23 | 25.86 |
Bra021192.1-P | Field mustard | plastid | 16.67 | 25.79 |
AT1G63070.1 | Thale cress | mitochondrion | 19.49 | 25.76 |
AT1G12300.1 | Thale cress | mitochondrion | 21.03 | 25.75 |
Bra016762.1-P | Field mustard | mitochondrion | 20.0 | 25.7 |
KRH08625 | Soybean | plastid | 18.97 | 25.69 |
KRH40400 | Soybean | plastid | 18.97 | 25.65 |
Bra026971.1-P | Field mustard | mitochondrion | 20.64 | 25.6 |
AT1G12620.1 | Thale cress | cytosol, mitochondrion | 20.26 | 25.44 |
Bra026958.1-P | Field mustard | mitochondrion | 20.64 | 25.27 |
Bra031731.1-P | Field mustard | mitochondrion | 16.41 | 25.2 |
VIT_14s0081g00280.t01 | Wine grape | mitochondrion | 20.64 | 25.2 |
Bra025516.1-P | Field mustard | cytosol, mitochondrion | 15.38 | 25.16 |
VIT_14s0030g02280.t01 | Wine grape | plastid | 18.08 | 25.13 |
AT1G63150.1 | Thale cress | mitochondrion | 20.26 | 25.12 |
AT1G62910.1 | Thale cress | mitochondrion | 20.26 | 25.0 |
KRH39050 | Soybean | mitochondrion | 16.92 | 24.81 |
Bra027658.1-P | Field mustard | cytosol, mitochondrion | 17.18 | 24.68 |
Bra036651.1-P | Field mustard | mitochondrion | 16.92 | 24.67 |
AT1G12775.1 | Thale cress | cytosol, mitochondrion | 20.26 | 24.53 |
Solyc06g007300.1.1 | Tomato | extracellular | 18.59 | 24.49 |
AT3G16710.1 | Thale cress | mitochondrion | 15.9 | 24.46 |
Bra028267.1-P | Field mustard | mitochondrion | 19.62 | 24.44 |
AT1G62914.1 | Thale cress | mitochondrion | 16.54 | 24.43 |
KRH09097 | Soybean | plastid | 18.08 | 24.19 |
AT1G12700.2 | Thale cress | cytosol | 19.1 | 24.11 |
PGSC0003DMT400056665 | Potato | mitochondrion | 18.21 | 24.11 |
KRH09095 | Soybean | plastid | 18.08 | 24.1 |
AT5G41170.1 | Thale cress | mitochondrion | 16.28 | 24.1 |
PGSC0003DMT400053185 | Potato | mitochondrion | 18.08 | 23.9 |
Bra026954.1-P | Field mustard | mitochondrion | 19.87 | 23.85 |
Bra026836.1-P | Field mustard | cytosol, mitochondrion | 15.0 | 23.83 |
AT1G64583.1 | Thale cress | mitochondrion | 15.64 | 23.83 |
AT1G62720.1 | Thale cress | mitochondrion | 14.74 | 23.71 |
VIT_14s0030g02260.t01 | Wine grape | cytosol | 13.46 | 23.7 |
PGSC0003DMT400052971 | Potato | mitochondrion | 17.95 | 23.61 |
Solyc06g007740.1.1 | Tomato | cytosol | 17.82 | 23.56 |
PGSC0003DMT400008760 | Potato | mitochondrion | 17.69 | 23.55 |
Bra026957.1-P | Field mustard | mitochondrion | 18.21 | 23.55 |
Solyc04g080120.1.1 | Tomato | extracellular | 18.46 | 23.53 |
AT1G64580.1 | Thale cress | mitochondrion | 15.77 | 23.52 |
Bra027026.1-P | Field mustard | mitochondrion | 15.77 | 23.52 |
PGSC0003DMT400056663 | Potato | plastid | 17.56 | 23.3 |
AT1G62680.2 | Thale cress | plastid | 16.28 | 23.18 |
AT1G06580.1 | Thale cress | mitochondrion | 14.74 | 23.0 |
PGSC0003DMT400015293 | Potato | mitochondrion | 17.95 | 22.95 |
PGSC0003DMT400015298 | Potato | mitochondrion | 17.95 | 22.95 |
PGSC0003DMT400053182 | Potato | cytosol | 17.31 | 22.54 |
Bra026401.1-P | Field mustard | plastid | 15.38 | 22.43 |
KRH08599 | Soybean | cytosol, plastid | 19.1 | 22.27 |
PGSC0003DMT400053556 | Potato | mitochondrion | 13.08 | 22.22 |
Bra027726.1-P | Field mustard | mitochondrion | 12.82 | 21.23 |
KRH09085 | Soybean | mitochondrion | 18.72 | 20.74 |
AT1G64100.2 | Thale cress | cytosol | 21.28 | 20.6 |
AT4G26800.2 | Thale cress | mitochondrion, plastid | 13.21 | 20.04 |
Bra027656.1-P | Field mustard | cytosol | 23.08 | 19.13 |
KRH12873 | Soybean | cytosol | 16.67 | 18.68 |
KRH39064 | Soybean | cytosol | 21.15 | 17.03 |
Bra016758.1-P | Field mustard | plastid | 19.62 | 13.2 |
Protein Annotations
EnsemblPlants:TraesCS1A01G054500.1 | EnsemblPlantsGene:TraesCS1A01G054500 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF874 |
PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 | PFscan:PS51375 | SEG:seg | SignalP:SignalP-noTM |
TIGRFAMs:TIGR00756 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:36171530..36174659
Molecular Weight (calculated)
85806.9 Da
IEP (calculated)
6.958
GRAVY (calculated)
0.067
Length
780 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPGRSLNGF LAALARATSS AAPACIRDGP VLVVALFNRL CREQAVVRVA PLTVHTYGIL MDCCCRTSRP DLGLAFFGRL LRTGLKTNEI TATTFLKCLC
101: YAKRTDEAVN VLLHRMPELG CVPDAFAYST VLKSLCDNSM SQQGLDLLHM MAKEGGGCSP NVVAYSTVIH GFFKEGEIGK ACNLFHEMMQ QGVEPNVWTY
201: SSIIDALCKA RAMDKAELVL QQMVNKGVQP NNVTYSCMIH GYSTSGRWKE AAKLLREMKS RGLILDIVTR NSFLASLCKH GRSKEAAEFL DSMTAKGHKP
301: DIVSYCILLH GYGTEGCFAD MIDVFYSMES NGIAADCHVF NILINGYAKR GMTEEAMLIF TEMRGQGVSP DVVTYSIVIA ALSRMGKLTD AIEKFNEMTA
401: LEVQPDTTVY HSLIQGCCID GDLVKAKELM FEMMNGGIPR PNIVFFNSVI NSLCKEGRVM DAHDVLDLVI GIGERPNVIT FNSLIDGYCL VGNMDKAFKI
501: LDVMESVGVE PNVVTYSTLL DGYSKNRRID DALTLFREMP RKRIKPDTVT YGIMLDGLFR AGRTVAAMEM FHEMIESGTT VDILIYNIKL GGLCRNNCVD
601: EAIALFQKLR AMNVKFNIEI LNTMINAMYK VQRKEEAKEL FATISANGLV PNESTYAVVI RNLLKGGAVE DADNMFSSKD NSGIVPSSRL INDIIRMLLE
701: KGEIAKAGNY LSKVDGKSIS LEASTASLML SLFSRKGKHQ EDIKLLPANI FKEIFYGILG VMTSDGDLGK DSSTASCDRG
101: YAKRTDEAVN VLLHRMPELG CVPDAFAYST VLKSLCDNSM SQQGLDLLHM MAKEGGGCSP NVVAYSTVIH GFFKEGEIGK ACNLFHEMMQ QGVEPNVWTY
201: SSIIDALCKA RAMDKAELVL QQMVNKGVQP NNVTYSCMIH GYSTSGRWKE AAKLLREMKS RGLILDIVTR NSFLASLCKH GRSKEAAEFL DSMTAKGHKP
301: DIVSYCILLH GYGTEGCFAD MIDVFYSMES NGIAADCHVF NILINGYAKR GMTEEAMLIF TEMRGQGVSP DVVTYSIVIA ALSRMGKLTD AIEKFNEMTA
401: LEVQPDTTVY HSLIQGCCID GDLVKAKELM FEMMNGGIPR PNIVFFNSVI NSLCKEGRVM DAHDVLDLVI GIGERPNVIT FNSLIDGYCL VGNMDKAFKI
501: LDVMESVGVE PNVVTYSTLL DGYSKNRRID DALTLFREMP RKRIKPDTVT YGIMLDGLFR AGRTVAAMEM FHEMIESGTT VDILIYNIKL GGLCRNNCVD
601: EAIALFQKLR AMNVKFNIEI LNTMINAMYK VQRKEEAKEL FATISANGLV PNESTYAVVI RNLLKGGAVE DADNMFSSKD NSGIVPSSRL INDIIRMLLE
701: KGEIAKAGNY LSKVDGKSIS LEASTASLML SLFSRKGKHQ EDIKLLPANI FKEIFYGILG VMTSDGDLGK DSSTASCDRG
001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS
Arabidopsis Description
RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.