Factsheet for TraesCS1A01G057300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G058400.1	Wheat	cytosol	70.06	97.67
TraesCS1B01G075300.1	Wheat	cytosol	67.41	81.07
TraesCS1A01G054800.1	Wheat	cytosol	55.01	67.87
TraesCS1A01G055600.1	Wheat	cytosol	30.5	67.38
TraesCS1A01G067700.1	Wheat	extracellular	30.5	64.99
TraesCS1A01G073700.1	Wheat	cytosol	34.82	64.94
TraesCS1A01G056000.1	Wheat	cytosol	36.07	64.43
TraesCS1A01G067800.1	Wheat	cytosol	33.15	63.64
TraesCS1A01G054500.1	Wheat	mitochondrion	68.38	62.95
TraesCS1A01G067000.1	Wheat	mitochondrion	62.12	62.29
TraesCS1A01G054700.2	Wheat	mitochondrion	68.52	60.59
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	60.31	60.39
TraesCS1A01G073600.1	Wheat	mitochondrion	32.45	59.44
TraesCS1A01G055800.1	Wheat	mitochondrion	62.95	58.63
TraesCS1A01G067600.1	Wheat	mitochondrion	65.46	57.81
TraesCS1A01G031600.1	Wheat	cytosol	52.51	56.95
TraesCS1A01G067400.1	Wheat	mitochondrion	65.04	56.61
TraesCS6A01G311600.1	Wheat	mitochondrion	64.9	55.74
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	38.86	54.6
TraesCS2A01G531100.1	Wheat	cytosol	43.04	54.31
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	28.41	53.97
TraesCS2A01G531000.1	Wheat	golgi	50.42	53.31
TraesCS2A01G526200.1	Wheat	golgi	50.14	52.86
KXG35774	Sorghum	cytosol, mitochondrion	33.7	51.16
TraesCS1A01G031700.1	Wheat	plastid	50.56	48.99
TraesCS2A01G530600.1	Wheat	cytosol	50.14	47.06
Zm00001d007555_P001	Maize	plastid	53.34	47.05
Zm00001d007548_P001	Maize	plastid	53.2	46.93
Zm00001d007559_P001	Maize	plastid	53.34	46.88
Zm00001d007531_P001	Maize	plastid	53.06	46.81
Zm00001d007534_P001	Maize	plastid	50.56	46.72
KXG28799	Sorghum	plastid	49.16	46.45
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	47.08	44.13
TraesCS1A01G073800.1	Wheat	mitochondrion	20.2	43.54
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	28.83	42.77
TraesCS6A01G083000.1	Wheat	cytosol	26.88	42.32
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	29.11	41.55
TraesCS6A01G014600.1	Wheat	cytosol	22.56	41.01
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	38.3	38.52
Os04t0351333-00	Rice	cytosol	46.66	38.11
TraesCS1A01G074000.1	Wheat	mitochondrion	14.21	36.04
TraesCS1A01G055500.1	Wheat	mitochondrion	10.86	35.94
TraesCS6A01G015000.1	Wheat	mitochondrion	20.75	35.9
TraesCS1A01G066600.1	Wheat	mitochondrion	12.12	33.08
Os04t0349600-01	Rice	plastid	16.99	31.52
Bra027636.1-P	Field mustard	cytosol	13.93	30.86
KRH39057	Soybean	cytosol	21.03	30.38
KRH39054	Soybean	cytosol	20.89	30.18
KRH39112	Soybean	cytosol	20.89	30.18
KRH39004	Soybean	cytosol	20.75	29.98
KRH39074	Soybean	cytosol	20.75	29.98
KRH39072	Soybean	cytosol	20.61	29.84
Solyc06g005220.2.1	Tomato	cytosol	16.57	29.31
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	10.31	29.25
Solyc06g007280.2.1	Tomato	cytosol	10.31	29.02
Solyc06g007810.1.1	Tomato	cytosol	10.59	28.36
VIT_14s0081g00110.t01	Wine grape	cytosol	19.08	27.9
PGSC0003DMT400008759	Potato	cytosol	12.4	27.9
PGSC0003DMT400052977	Potato	cytosol	14.9	27.51
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.11	27.25
KRH09084	Soybean	plastid	19.36	27.2
KRH09082	Soybean	cytosol	15.32	26.96
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.94	26.93
Bra006187.1-P	Field mustard	plastid	10.86	26.8
KRH39066	Soybean	cytosol	20.61	26.67
KRH08636	Soybean	cytosol	19.08	26.25
KRH48615	Soybean	mitochondrion	19.92	26.24
Bra026882.1-P	Field mustard	cytosol	19.36	26.03
Bra026884.1-P	Field mustard	cytosol	16.57	25.93
KRH40513	Soybean	plastid	12.67	25.93
KRH17148	Soybean	mitochondrion	19.64	25.87
PGSC0003DMT400025067	Potato	cytosol	17.13	25.84
KRH25652	Soybean	cytosol, golgi	19.22	25.56
KRH09154	Soybean	mitochondrion	19.78	25.54
KRH08607	Soybean	cytosol	19.78	25.31
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.41	25.25
CDX68679	Canola	cytosol	4.04	25.22
KRH08671	Soybean	cytosol, mitochondrion	19.36	25.14
PGSC0003DMT400008757	Potato	cytosol	17.41	25.1
KRH09121	Soybean	mitochondrion	18.66	25.09
Bra036649.1-P	Field mustard	cytosol	13.65	25.06
AT1G63330.2	Thale cress	cytosol	19.5	25.04
KRH08277	Soybean	plastid	19.64	24.87
KRH08628	Soybean	plastid	19.08	24.82
KRH08639	Soybean	mitochondrion, plastid	19.5	24.78
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.97	24.57
PGSC0003DMT400025074	Potato	cytosol	18.52	24.09
VIT_14s0081g00120.t01	Wine grape	plastid	19.5	24.01
KRH31646	Soybean	cytosol	17.27	23.94
Bra031731.1-P	Field mustard	mitochondrion	16.85	23.82
AT5G16640.1	Thale cress	mitochondrion	16.71	23.81
KRH41817	Soybean	mitochondrion	18.25	23.6
Bra027029.1-P	Field mustard	mitochondrion	7.94	23.46
KRH40400	Soybean	plastid	18.8	23.4
KRH08625	Soybean	plastid	18.66	23.26
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.32	23.06
PGSC0003DMT400053185	Potato	mitochondrion	18.94	23.05
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.78	22.94
AT1G12300.1	Thale cress	mitochondrion	20.33	22.92
Bra026971.1-P	Field mustard	mitochondrion	20.06	22.89
Solyc06g007740.1.1	Tomato	cytosol	18.66	22.71
PGSC0003DMT400056663	Potato	plastid	18.52	22.62
VIT_14s0081g00270.t01	Wine grape	plastid	18.25	22.59
PGSC0003DMT400056665	Potato	mitochondrion	18.52	22.58
AT1G62930.1	Thale cress	plastid	19.78	22.58
AT1G64580.1	Thale cress	mitochondrion	16.43	22.56
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.5	22.54
AT1G62670.1	Thale cress	mitochondrion	19.78	22.54
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.06	22.54
KRH09097	Soybean	plastid	18.25	22.47
Solyc06g007300.1.1	Tomato	extracellular	18.52	22.47
Bra016762.1-P	Field mustard	mitochondrion	18.94	22.41
AT1G62590.1	Thale cress	mitochondrion	19.78	22.4
KRH09095	Soybean	plastid	18.25	22.39
AT1G63070.1	Thale cress	mitochondrion	18.38	22.37
VIT_14s0030g02260.t01	Wine grape	cytosol	13.79	22.35
Bra021192.1-P	Field mustard	plastid	15.6	22.22
PGSC0003DMT400008760	Potato	mitochondrion	18.11	22.18
KRH39050	Soybean	mitochondrion	16.43	22.18
VIT_14s0030g02280.t01	Wine grape	plastid	17.27	22.1
Bra028267.1-P	Field mustard	mitochondrion	19.22	22.04
AT1G63130.1	Thale cress	mitochondrion	19.22	21.9
AT3G16710.1	Thale cress	mitochondrion	15.46	21.89
AT1G63080.3	Thale cress	mitochondrion	18.66	21.82
AT5G41170.1	Thale cress	mitochondrion	16.02	21.82
Bra026958.1-P	Field mustard	mitochondrion	19.36	21.82
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.43	21.73
AT1G64583.1	Thale cress	mitochondrion	15.46	21.68
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.36	21.58
AT1G62910.1	Thale cress	mitochondrion	18.94	21.52
PGSC0003DMT400052971	Potato	mitochondrion	17.69	21.42
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.62	21.38
KRH08599	Soybean	cytosol, plastid	19.92	21.38
PGSC0003DMT400053182	Potato	cytosol	17.83	21.37
Bra026957.1-P	Field mustard	mitochondrion	17.83	21.23
AT1G63400.1	Thale cress	cytosol, plastid	16.99	21.14
Bra036651.1-P	Field mustard	mitochondrion	15.74	21.12
AT1G62720.1	Thale cress	mitochondrion	14.21	21.03
AT1G63150.1	Thale cress	mitochondrion	18.38	20.99
Bra026954.1-P	Field mustard	mitochondrion	18.94	20.92
AT1G12700.2	Thale cress	cytosol	17.97	20.87
AT1G62914.1	Thale cress	mitochondrion	15.18	20.64
Solyc04g080120.1.1	Tomato	extracellular	17.41	20.42
AT1G06580.1	Thale cress	mitochondrion	14.21	20.4
PGSC0003DMT400015293	Potato	mitochondrion	16.85	19.84
PGSC0003DMT400015298	Potato	mitochondrion	16.85	19.84
AT1G62680.2	Thale cress	plastid	15.04	19.71
PGSC0003DMT400053556	Potato	mitochondrion	12.53	19.61
Bra027026.1-P	Field mustard	mitochondrion	14.21	19.5
AT1G64100.2	Thale cress	cytosol	21.31	18.98
KRH09085	Soybean	mitochondrion	18.38	18.75
Bra026401.1-P	Field mustard	plastid	13.93	18.69
AT4G26800.2	Thale cress	mitochondrion, plastid	13.23	18.48
Bra027656.1-P	Field mustard	cytosol	23.96	18.28
KRH12873	Soybean	cytosol	17.69	18.25
Bra027726.1-P	Field mustard	mitochondrion	11.84	18.05
KRH39064	Soybean	cytosol	21.03	15.58
Bra016758.1-P	Field mustard	plastid	19.08	11.82

Protein Annotations

EnsemblPlants:TraesCS1A01G057300.1	EnsemblPlantsGene:TraesCS1A01G057300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF48452	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:37502130..37504986

Molecular Weight (calculated)

79638.3 Da

IEP (calculated)

7.112

GRAVY (calculated)

0.071

Length

718 amino acids

Sequence
(BLAST)

001: MGCCCRVHRP DLGLAFFGRL LRTGLKTEQI TANTFLKCLC YAKRTEEAVN MLLHGMSELG CVPDAISYSI VLKSLCENSM SQRAFDLLHS GHSTCSFSVV
101: AYSTVIHGFF KEGKTGKACN LFHEMIHQGV DPDVVTCNSI INALCKARAM DKAELVLRQM VDKGVQPNTV TYNCMIHGYS TSGRLKEAVK MLTEMTSRGL
201: IPDIVTYNSL MTSLSKHRRS KEAAEIFYSM TAKGHKPNAA SHRILLNGYA TEGCFADMID LFNSMESNGF VADCHVFTIL IDAYAKRGMM DEAMLIFTEM
301: REKGVSPDVF TYYTVIAALC RLGRLADAMD RFNEMTDMGV QPNTVVYHSL IQGFCMLGDL VKAKELVSEM MNKGIPRPDI AFFSSIINSL CKEGRVMDAQ
401: DIFELVISID ERPDVITFNS LIDGYGLIGQ MDKAFGVLDA MVSAGIEPNV VTYSSLLDGY CRNGRIDDAL ILFREMPRKR IKPNTVTYGI ILHGLFRAGR
501: TVAARKMFDE MIEGGIPVSI SIYNIILGGL CRNNCADEAI TLFQKLGAMN VKFDIITLNT MINAMFKVRR REEANDLFAA ISASGLVPNA STYGIMIENI
601: LKEGSVEEVD NMFSSMEKSG CAPSSRLINC IIRMLLEKGR MGPGRTMFER ADAMLKYWIY KFMPLYAASY TGGVCCIHIG EIFSVRYGKE FTAVTFSFSA
701: RDTNSALGDR GERIDGSD

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.