Factsheet for TraesCS1D01G058400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G075300.1	Wheat	cytosol	88.35	76.21
TraesCS1D01G076700.1	Wheat	cytosol	48.93	75.45
TraesCS1D01G057700.1	Wheat	cytosol	44.27	70.15
TraesCS1A01G057300.1	Wheat	cytosol	97.67	70.06
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	85.63	63.27
TraesCS1D01G068700.1	Wheat	cytosol	53.59	62.87
TraesCS1D01G055300.1	Wheat	cytosol	75.34	62.78
TraesCS1D01G056700.1	Wheat	cytosol	73.2	62.11
TraesCS1D01G067600.1	Wheat	cytosol	41.16	58.08
TraesCS1D01G058000.1	Wheat	cytosol	44.27	56.16
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	73.2	56.02
TraesCS1D01G076500.1	Wheat	mitochondrion	67.96	52.71
TraesCS1D01G033000.1	Wheat	cytosol	39.81	50.74
KXG35774	Sorghum	cytosol, mitochondrion	46.21	50.32
TraesCS1D01G056200.1	Wheat	mitochondrion	76.5	47.76
TraesCS1D01G068800.1	Wheat	plastid	73.59	46.45
TraesCS6D01G290900.1	Wheat	mitochondrion	66.02	46.38
TraesCS2D01G532200.1	Wheat	cytosol	26.21	46.08
TraesCS1D01G068400.1	Wheat	mitochondrion	73.4	45.93
TraesCS1D01G068900.1	Wheat	mitochondrion	72.43	45.88
TraesCS1D01G068500.1	Wheat	mitochondrion	71.84	45.57
TraesCS1D01G076400.1	Wheat	cytosol	32.04	45.45
TraesCS1D01G058500.1	Wheat	plastid	50.29	45.44
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	57.86	45.22
TraesCS1D01G069100.1	Wheat	mitochondrion	55.73	44.63
TraesCS2D01G532400.1	Wheat	cytosol	52.82	44.52
TraesCS2D01G532500.1	Wheat	plastid	57.67	43.68
TraesCS2D01G532100.1	Wheat	mitochondrion	57.09	42.49
TraesCS6D01G017700.1	Wheat	plastid	41.75	40.26
TraesCS6D01G017800.1	Wheat	cytosol	41.94	40.22
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	59.81	40.21
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	61.36	40.15
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	61.55	40.03
Zm00001d007534_P001	Maize	plastid	58.06	38.48
TraesCS2D01G532600.1	Wheat	plastid	57.48	38.14
TraesCS2D01G532300.1	Wheat	plastid	57.48	38.05
Zm00001d007548_P001	Maize	plastid	58.25	36.85
Zm00001d007555_P001	Maize	plastid	58.25	36.85
Zm00001d007559_P001	Maize	plastid	58.45	36.84
TraesCS1D01G076900.1	Wheat	plastid	46.6	36.53
Zm00001d007531_P001	Maize	plastid	57.67	36.49
KXG28799	Sorghum	plastid	53.01	35.92
Os04t0351333-00	Rice	cytosol	58.25	34.13
TraesCS6D01G083300.1	Wheat	mitochondrion	28.74	33.18
Bra027636.1-P	Field mustard	cytosol	19.61	31.17
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	28.93	30.98
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	42.33	30.49
TraesCS6D01G083100.1	Wheat	cytosol	28.35	29.8
TraesCS6D01G083400.1	Wheat	mitochondrion	27.77	29.01
PGSC0003DMT400008759	Potato	cytosol	17.86	28.84
PGSC0003DMT400052977	Potato	cytosol	21.55	28.53
Solyc06g007810.1.1	Tomato	cytosol	14.76	28.36
KRH09082	Soybean	cytosol	21.55	27.21
Solyc06g005220.2.1	Tomato	cytosol	21.36	27.09
KRH39057	Soybean	cytosol	25.63	26.56
KRH39004	Soybean	cytosol	25.44	26.36
KRH39054	Soybean	cytosol	25.44	26.36
TraesCS6D01G047700.1	Wheat	mitochondrion	35.15	26.19
KRH39112	Soybean	cytosol	25.24	26.16
KRH39072	Soybean	cytosol	25.05	26.01
KRH39074	Soybean	cytosol	25.05	25.96
Solyc06g007280.2.1	Tomato	cytosol	12.82	25.88
TraesCS7D01G231400.1	Wheat	cytosol, plastid	20.19	25.81
CDX68679	Canola	cytosol	5.63	25.22
Bra006187.1-P	Field mustard	plastid	14.17	25.09
VIT_14s0081g00110.t01	Wine grape	cytosol	23.88	25.05
TraesCS1D01G068600.1	Wheat	plastid	16.5	25.0
Os04t0349600-01	Rice	plastid	18.64	24.81
Bra027029.1-P	Field mustard	mitochondrion	11.46	24.28
Bra026884.1-P	Field mustard	cytosol	21.55	24.18
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	23.5	23.96
VIT_12s0028g02320.t01	Wine grape	mitochondrion	21.55	23.27
KRH08636	Soybean	cytosol	23.5	23.18
PGSC0003DMT400025067	Potato	cytosol	21.36	23.11
KRH40513	Soybean	plastid	15.73	23.08
KRH39066	Soybean	cytosol	24.85	23.06
Bra036649.1-P	Field mustard	cytosol	17.48	23.02
KRH48615	Soybean	mitochondrion	24.27	22.94
KRH08607	Soybean	cytosol	24.85	22.82
KRH09084	Soybean	plastid	22.52	22.7
TraesCS6D01G076500.1	Wheat	plastid	19.81	22.52
KRH08671	Soybean	cytosol, mitochondrion	24.08	22.42
KRH25652	Soybean	cytosol, golgi	23.5	22.41
KRH17148	Soybean	mitochondrion	23.69	22.39
KRH09154	Soybean	mitochondrion	24.08	22.3
PGSC0003DMT400025087	Potato	endoplasmic reticulum	21.36	22.22
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	14.76	22.22
TraesCS1D01G057800.1	Wheat	mitochondrion	15.53	22.04
KRH08639	Soybean	mitochondrion, plastid	24.08	21.95
KRH08628	Soybean	plastid	23.5	21.92
VIT_14s0030g02260.t01	Wine grape	cytosol	18.84	21.9
PGSC0003DMT400008757	Potato	cytosol	21.16	21.89
KRH08277	Soybean	plastid	24.08	21.87
Bra026882.1-P	Field mustard	cytosol	22.52	21.72
AT5G16640.1	Thale cress	mitochondrion	20.97	21.43
KRH09121	Soybean	mitochondrion	21.94	21.16
KRH41817	Soybean	mitochondrion	22.72	21.08
KRH40400	Soybean	plastid	23.5	20.97
Bra025516.1-P	Field mustard	cytosol, mitochondrion	19.42	20.96
KRH08625	Soybean	plastid	23.11	20.66
PGSC0003DMT400025074	Potato	cytosol	22.14	20.65
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.97	20.57
Bra031731.1-P	Field mustard	mitochondrion	20.19	20.47
VIT_14s0081g00120.t01	Wine grape	plastid	23.11	20.41
KRH31646	Soybean	cytosol	20.19	20.08
PGSC0003DMT400053185	Potato	mitochondrion	22.91	20.0
AT1G64583.1	Thale cress	mitochondrion	19.61	19.73
AT3G16710.1	Thale cress	mitochondrion	19.42	19.72
PGSC0003DMT400056665	Potato	mitochondrion	22.52	19.69
AT1G64580.1	Thale cress	mitochondrion	20.0	19.69
AT1G63330.2	Thale cress	cytosol	21.36	19.68
Bra021192.1-P	Field mustard	plastid	19.22	19.64
Solyc06g007740.1.1	Tomato	cytosol	22.14	19.32
PGSC0003DMT400056663	Potato	plastid	21.94	19.22
AT1G62720.1	Thale cress	mitochondrion	18.06	19.18
AT5G41170.1	Thale cress	mitochondrion	19.61	19.17
VIT_14s0081g00270.t01	Wine grape	plastid	21.55	19.14
PGSC0003DMT400008760	Potato	mitochondrion	21.75	19.11
Solyc06g007300.1.1	Tomato	extracellular	21.94	19.09
KRH09097	Soybean	plastid	21.55	19.04
KRH09095	Soybean	plastid	21.55	18.97
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.5	18.94
VIT_14s0030g02280.t01	Wine grape	plastid	20.58	18.89
PGSC0003DMT400052971	Potato	mitochondrion	21.75	18.89
KRH39050	Soybean	mitochondrion	19.42	18.8
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.52	18.74
KRH08599	Soybean	cytosol, plastid	24.27	18.68
AT1G12300.1	Thale cress	mitochondrion	23.11	18.68
Bra016762.1-P	Field mustard	mitochondrion	21.94	18.62
Bra026971.1-P	Field mustard	mitochondrion	22.72	18.6
PGSC0003DMT400053182	Potato	cytosol	21.55	18.53
Bra036651.1-P	Field mustard	mitochondrion	19.22	18.5
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.48	18.33
Bra026957.1-P	Field mustard	mitochondrion	21.36	18.24
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.22	18.23
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.94	18.2
Bra026958.1-P	Field mustard	mitochondrion	22.33	18.05
AT1G06580.1	Thale cress	mitochondrion	17.48	18.0
Solyc04g080120.1.1	Tomato	extracellular	21.36	17.97
AT1G62930.1	Thale cress	plastid	21.94	17.96
AT1G62670.1	Thale cress	mitochondrion	21.94	17.94
AT1G12700.2	Thale cress	cytosol	21.16	17.64
Bra028267.1-P	Field mustard	mitochondrion	21.36	17.57
Bra026401.1-P	Field mustard	plastid	18.25	17.57
AT1G12775.1	Thale cress	cytosol, mitochondrion	21.94	17.55
AT1G62680.2	Thale cress	plastid	18.64	17.52
AT1G62590.1	Thale cress	mitochondrion	21.55	17.51
AT1G63130.1	Thale cress	mitochondrion	21.36	17.46
Bra026954.1-P	Field mustard	mitochondrion	21.94	17.38
AT1G63070.1	Thale cress	mitochondrion	19.81	17.29
AT1G62910.1	Thale cress	mitochondrion	21.16	17.25
PGSC0003DMT400015293	Potato	mitochondrion	20.39	17.21
PGSC0003DMT400015298	Potato	mitochondrion	20.39	17.21
Bra027026.1-P	Field mustard	mitochondrion	17.28	17.02
AT1G63080.3	Thale cress	mitochondrion	20.0	16.78
KRH12873	Soybean	cytosol	22.52	16.67
AT4G26800.2	Thale cress	mitochondrion, plastid	16.5	16.54
AT1G63400.1	Thale cress	cytosol, plastid	18.25	16.29
AT1G63150.1	Thale cress	mitochondrion	19.81	16.22
PGSC0003DMT400053556	Potato	mitochondrion	14.37	16.12
Bra027726.1-P	Field mustard	mitochondrion	14.56	15.92
KRH09085	Soybean	mitochondrion	21.75	15.91
Bra027656.1-P	Field mustard	cytosol	27.96	15.3
AT1G64100.2	Thale cress	cytosol	23.5	15.01
AT1G62914.1	Thale cress	mitochondrion	15.34	14.96
KRH39064	Soybean	cytosol	25.24	13.42
Bra016758.1-P	Field mustard	plastid	21.75	9.66
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	0.19	0.44
TraesCS1D01G056600.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G058400.1	EnsemblPlantsGene:TraesCS1D01G058400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:-:38557416..38559581

Molecular Weight (calculated)

57274.1 Da

IEP (calculated)

5.565

GRAVY (calculated)

0.086

Length

515 amino acids

Sequence
(BLAST)

001: MIHQGVDPDV VTYNSIIDGL CKARAMDKAE LVLRQMVDKG VQPNTVTYNC MIHGYSTSGR LKEAVKMLTE MTSRGLIPDI VTYNSLMTSL CKHGRSKEAA
101: EIFYSMTAKG HKPNAASYRI LLNGYATEGC FADMIDLFNS MKSNGFVADC HVFTILIDAY AKRGMMDEAM LIFTEMREKG VSPDVFTYYT VIAALCRLGR
201: LADAMDRFNE MTDMGVQPNT VVYHSLIQGF CMLGDLVKAK ELVSEMMNKG IPRPDIAFFS SIINSLCKEG RVMDAQDIFE LVISIDERPD VITFNSLIDG
301: YGLIGQMDKA FGVLDAMVSA GIEPNVVTYS SLLDGYCRNG RIDDALILFR EMPRKRIKPN TVTYGIILDG LFRAGRTVAA RKMFDEMIEG GIPVSISIYN
401: IILGGLYRNN CADEAITLFQ KLGAMNVKFY IITLNTMINA MFKVRRREEA NDLFAAISAS GLVPNASTYG IMIENILKEG SVEEVDNMFS SMEKSDCAPS
501: SRLINYIIRM LLEKG

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.