Factsheet for TraesCS1D01G057700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G056000.1	Wheat	cytosol	75.69	61.19
TraesCS1D01G067600.1	Wheat	cytosol	66.15	58.9
TraesCS1D01G076700.1	Wheat	cytosol	60.31	58.68
TraesCS2D01G532200.1	Wheat	cytosol	49.85	55.29
TraesCS1D01G068700.1	Wheat	cytosol	69.85	51.71
TraesCS1D01G033000.1	Wheat	cytosol	56.31	45.3
TraesCS1D01G058400.1	Wheat	cytosol	70.15	44.27
TraesCS1D01G058500.1	Wheat	plastid	72.62	41.4
TraesCS1D01G055300.1	Wheat	cytosol	74.77	39.32
TraesCS1D01G056700.1	Wheat	cytosol	73.23	39.21
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	79.38	38.34
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	81.54	38.02
TraesCS1D01G076400.1	Wheat	cytosol	40.0	35.81
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	76.31	34.59
TraesCS1D01G076500.1	Wheat	mitochondrion	70.46	34.49
KXG35774	Sorghum	cytosol, mitochondrion	45.85	31.5
TraesCS1D01G056200.1	Wheat	mitochondrion	73.54	28.97
TraesCS1D01G068500.1	Wheat	mitochondrion	69.54	27.83
TraesCS1D01G068800.1	Wheat	plastid	68.92	27.45
TraesCS1D01G068400.1	Wheat	mitochondrion	68.62	27.1
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	54.77	27.01
TraesCS1D01G068900.1	Wheat	mitochondrion	67.08	26.81
TraesCS2D01G532500.1	Wheat	plastid	55.69	26.62
TraesCS2D01G532400.1	Wheat	cytosol	49.54	26.35
TraesCS2D01G532100.1	Wheat	mitochondrion	55.08	25.87
TraesCS6D01G017700.1	Wheat	plastid	38.77	23.6
CDX68679	Canola	cytosol	8.31	23.48
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	56.31	23.25
TraesCS2D01G532600.1	Wheat	plastid	55.38	23.2
TraesCS2D01G532300.1	Wheat	plastid	54.77	22.88
Zm00001d007534_P001	Maize	plastid	54.46	22.78
TraesCS6D01G017800.1	Wheat	cytosol	37.54	22.72
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	55.08	22.6
Zm00001d007555_P001	Maize	plastid	56.31	22.48
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	52.92	22.45
Zm00001d007548_P001	Maize	plastid	55.69	22.24
Zm00001d007559_P001	Maize	plastid	55.69	22.15
Os04t0351333-00	Rice	cytosol	59.69	22.07
Zm00001d007531_P001	Maize	plastid	55.08	21.99
TraesCS6D01G290900.1	Wheat	mitochondrion	48.0	21.28
TraesCS1D01G069100.1	Wheat	mitochondrion	40.92	20.68
KXG28799	Sorghum	plastid	46.77	20.0
TraesCS1D01G076900.1	Wheat	plastid	39.69	19.63
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	37.54	17.06
Solyc06g007810.1.1	Tomato	cytosol	11.69	14.18
PGSC0003DMT400008759	Potato	cytosol	10.77	10.97
TraesCS6D01G047700.1	Wheat	mitochondrion	20.92	9.84
PGSC0003DMT400052977	Potato	cytosol	11.08	9.25
VIT_14s0030g02260.t01	Wine grape	cytosol	12.0	8.8
Bra026884.1-P	Field mustard	cytosol	11.69	8.28
Bra031731.1-P	Field mustard	mitochondrion	12.62	8.07
VIT_14s0081g00110.t01	Wine grape	cytosol	12.0	7.94
Bra006187.1-P	Field mustard	plastid	7.08	7.9
Solyc06g005220.2.1	Tomato	cytosol	9.85	7.88
KRH39054	Soybean	cytosol	12.0	7.85
KRH39057	Soybean	cytosol	12.0	7.85
KRH39112	Soybean	cytosol	11.69	7.65
PGSC0003DMT400025074	Potato	cytosol	12.92	7.61
Bra026836.1-P	Field mustard	cytosol, mitochondrion	11.38	7.54
KRH39004	Soybean	cytosol	11.38	7.44
KRH39074	Soybean	cytosol	11.38	7.44
KRH09082	Soybean	cytosol	9.23	7.35
AT1G63330.2	Thale cress	cytosol	12.62	7.33
Bra026882.1-P	Field mustard	cytosol	12.0	7.3
PGSC0003DMT400025087	Potato	endoplasmic reticulum	11.08	7.27
KRH39072	Soybean	cytosol	11.08	7.26
PGSC0003DMT400008757	Potato	cytosol	11.08	7.23
KRH17148	Soybean	mitochondrion	12.0	7.16
PGSC0003DMT400025067	Potato	cytosol	10.46	7.14
Bra027636.1-P	Field mustard	cytosol	7.08	7.1
KRH09084	Soybean	plastid	10.77	6.85
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	10.46	6.73
Solyc04g080120.1.1	Tomato	extracellular	12.62	6.7
KRH25652	Soybean	cytosol, golgi	11.08	6.67
PGSC0003DMT400008760	Potato	mitochondrion	12.0	6.66
KRH08625	Soybean	plastid	11.69	6.6
KRH31646	Soybean	cytosol	10.46	6.56
KRH08639	Soybean	mitochondrion, plastid	11.38	6.55
KRH08628	Soybean	plastid	11.08	6.52
AT1G62930.1	Thale cress	plastid	12.62	6.52
AT1G63150.1	Thale cress	mitochondrion	12.62	6.52
KRH08636	Soybean	cytosol	10.46	6.51
AT1G63130.1	Thale cress	mitochondrion	12.62	6.51
Bra027658.1-P	Field mustard	cytosol, mitochondrion	10.77	6.45
PGSC0003DMT400053185	Potato	mitochondrion	11.69	6.44
AT1G12300.1	Thale cress	mitochondrion	12.62	6.44
KRH48615	Soybean	mitochondrion	10.77	6.42
Solyc06g007300.1.1	Tomato	extracellular	11.69	6.42
PGSC0003DMT400015293	Potato	mitochondrion	12.0	6.39
PGSC0003DMT400015298	Potato	mitochondrion	12.0	6.39
VIT_14s0081g00270.t01	Wine grape	plastid	11.38	6.38
KRH08671	Soybean	cytosol, mitochondrion	10.77	6.33
AT1G62590.1	Thale cress	mitochondrion	12.31	6.31
KRH39066	Soybean	cytosol	10.77	6.31
AT3G22470.1	Thale cress	cytosol, mitochondrion	12.0	6.3
AT1G63070.1	Thale cress	mitochondrion	11.38	6.27
Solyc06g007740.1.1	Tomato	cytosol	11.38	6.27
KRH40400	Soybean	plastid	11.08	6.24
PGSC0003DMT400053182	Potato	cytosol	11.38	6.18
AT1G12620.1	Thale cress	cytosol, mitochondrion	11.69	6.12
KRH09154	Soybean	mitochondrion	10.46	6.12
PGSC0003DMT400056665	Potato	mitochondrion	11.08	6.11
AT1G64100.2	Thale cress	cytosol	15.08	6.08
PGSC0003DMT400052971	Potato	mitochondrion	11.08	6.07
KRH08607	Soybean	cytosol	10.46	6.06
Bra026971.1-P	Field mustard	mitochondrion	11.69	6.04
VIT_14s0081g00120.t01	Wine grape	plastid	10.77	6.0
Bra026954.1-P	Field mustard	mitochondrion	12.0	6.0
Bra026958.1-P	Field mustard	mitochondrion	11.69	5.97
Bra016762.1-P	Field mustard	mitochondrion	11.08	5.93
Bra028267.1-P	Field mustard	mitochondrion	11.38	5.91
AT1G62670.1	Thale cress	mitochondrion	11.38	5.87
AT1G62910.1	Thale cress	mitochondrion	11.38	5.85
AT1G12700.2	Thale cress	cytosol	11.08	5.83
KRH08277	Soybean	plastid	10.15	5.82
VIT_14s0081g00280.t01	Wine grape	mitochondrion	11.38	5.79
PGSC0003DMT400056663	Potato	plastid	10.46	5.78
AT1G12775.1	Thale cress	cytosol, mitochondrion	11.38	5.75
Bra027656.1-P	Field mustard	cytosol	16.31	5.63
KRH09121	Soybean	mitochondrion	9.23	5.62
KRH41817	Soybean	mitochondrion	9.54	5.59
AT1G63080.3	Thale cress	mitochondrion	10.46	5.54
KRH08599	Soybean	cytosol, plastid	11.38	5.53
KRH09097	Soybean	plastid	9.85	5.49
KRH09095	Soybean	plastid	9.54	5.3
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	8.31	5.14
AT1G62680.2	Thale cress	plastid	8.62	5.11
Bra036651.1-P	Field mustard	mitochondrion	8.31	5.05
Bra025516.1-P	Field mustard	cytosol, mitochondrion	7.38	5.03
Bra026957.1-P	Field mustard	mitochondrion	9.23	4.98
KRH09085	Soybean	mitochondrion	10.77	4.97
Bra021192.1-P	Field mustard	plastid	7.69	4.96
AT3G16710.1	Thale cress	mitochondrion	7.69	4.93
TraesCS1D01G058000.1	Wheat	cytosol	6.15	4.93
Bra027726.1-P	Field mustard	mitochondrion	7.08	4.88
Bra036649.1-P	Field mustard	cytosol	5.85	4.86
Bra026401.1-P	Field mustard	plastid	7.69	4.67
Bra027026.1-P	Field mustard	mitochondrion	7.38	4.59
AT1G62720.1	Thale cress	mitochondrion	6.77	4.54
AT5G16640.1	Thale cress	mitochondrion	6.77	4.37
AT5G41170.1	Thale cress	mitochondrion	7.08	4.36
AT1G64583.1	Thale cress	mitochondrion	6.77	4.3
KRH39064	Soybean	cytosol	12.62	4.23
KRH12873	Soybean	cytosol	8.92	4.17
AT1G63400.1	Thale cress	cytosol, plastid	7.38	4.16
AT1G64580.1	Thale cress	mitochondrion	6.46	4.02
AT1G06580.1	Thale cress	mitochondrion	6.15	4.0
VIT_12s0028g02320.t01	Wine grape	mitochondrion	5.85	3.98
KRH39050	Soybean	mitochondrion	6.46	3.95
VIT_14s0030g02280.t01	Wine grape	plastid	6.15	3.57
KRH40513	Soybean	plastid	3.69	3.42
PGSC0003DMT400053556	Potato	mitochondrion	4.62	3.27
Bra016758.1-P	Field mustard	plastid	10.77	3.02
AT4G26800.2	Thale cress	mitochondrion, plastid	4.62	2.92
Bra027029.1-P	Field mustard	mitochondrion	2.15	2.88
Os04t0349600-01	Rice	plastid	2.77	2.33
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	2.77	1.87
AT1G62914.1	Thale cress	mitochondrion	2.77	1.7
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	1.54	1.46
TraesCS6D01G083300.1	Wheat	mitochondrion	1.54	1.12
TraesCS6D01G083100.1	Wheat	cytosol	1.54	1.02
TraesCS6D01G083400.1	Wheat	mitochondrion	1.23	0.81
TraesCS6D01G076500.1	Wheat	plastid	0.62	0.44
TraesCS1D01G057800.1	Wheat	mitochondrion	0.31	0.28
Solyc06g007280.2.1	Tomato	cytosol	0.0	0.0
TraesCS1D01G056600.1	Wheat	mitochondrion	0.0	0.0
TraesCS1D01G068600.1	Wheat	plastid	0.0	0.0
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	0.0	0.0
TraesCS7D01G231400.1	Wheat	cytosol, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1D01G057700.1	EnsemblPlantsGene:TraesCS1D01G057700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:-:37962361..37963338

Molecular Weight (calculated)

36427.6 Da

IEP (calculated)

7.906

GRAVY (calculated)

0.084

Length

325 amino acids

Sequence
(BLAST)

001: MMSKGIPRPN IVFFNSVINY LCKEGRVMDA QDIFEFIISI DERPDVITFN SLIDGYCLVS KMDKASGVLD AMVSAGIEPN VVTYNTLVSG YSINRRIDDG
101: LTLFRQMPLK RIKPDSVTYG IILDGFFRAG RTVAARKMFH EMIERGIPVT ISIYNRILGD LCRNNCADEA IALFQKLGAM NVKFDIITLN TMINAMFKVR
201: RREEANDLFA AISASGLVPN ASTYGIMIKN ILKEGSVEEI DNMFSSMEKS GIVPSSHLIN DIIRMLLEKG EIARAGYYLL KVDGKNTLLE ASTTSLMLSL
301: FSREGKYQED VKLLPAKYQF FYGFG

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.