Factsheet for TraesCS1D01G033100.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

mitochondrion 4
cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G033000.1	Wheat	cytosol	43.46	84.65
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	84.12	83.59
HORVU1Hr1G004750.6	Barley	plastid	84.63	83.46
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	74.08	83.4
TraesCS1D01G068700.1	Wheat	cytosol	35.32	63.33
TraesCS1D01G058400.1	Wheat	cytosol	40.15	61.36
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	53.11	59.97
TraesCS1D01G076500.1	Wheat	mitochondrion	50.57	59.94
TraesCS1D01G056700.1	Wheat	cytosol	46.12	59.8
TraesCS1D01G055300.1	Wheat	cytosol	46.89	59.71
TraesCS1D01G068500.1	Wheat	mitochondrion	61.5	59.61
KXG28799	Sorghum	plastid	57.31	59.34
TraesCS1D01G068800.1	Wheat	plastid	61.37	59.19
TraesCS1D01G068400.1	Wheat	mitochondrion	61.75	59.05
TraesCS1D01G067600.1	Wheat	cytosol	27.32	58.9
TraesCS1D01G068900.1	Wheat	mitochondrion	60.74	58.79
TraesCS1D01G058500.1	Wheat	plastid	42.19	58.25
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	49.3	57.65
TraesCS1D01G058000.1	Wheat	cytosol	29.73	57.64
TraesCS1D01G056200.1	Wheat	mitochondrion	60.36	57.58
Zm00001d007534_P001	Maize	plastid	56.54	57.27
TraesCS1D01G076700.1	Wheat	cytosol	24.27	57.19
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	47.78	57.06
TraesCS2D01G532600.1	Wheat	plastid	56.04	56.83
TraesCS2D01G532200.1	Wheat	cytosol	21.09	56.66
TraesCS1D01G057700.1	Wheat	cytosol	23.25	56.31
TraesCS2D01G532400.1	Wheat	cytosol	43.58	56.14
TraesCS1D01G057800.1	Wheat	mitochondrion	25.79	55.92
TraesCS6D01G290900.1	Wheat	mitochondrion	51.84	55.66
TraesCS1D01G076400.1	Wheat	cytosol	25.67	55.65
TraesCS1D01G068600.1	Wheat	plastid	24.02	55.59
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	24.14	55.56
Zm00001d007548_P001	Maize	plastid	56.92	55.04
Zm00001d007531_P001	Maize	plastid	56.8	54.91
Zm00001d007555_P001	Maize	plastid	56.8	54.91
TraesCS2D01G532100.1	Wheat	mitochondrion	48.28	54.91
Zm00001d007559_P001	Maize	plastid	56.92	54.83
TraesCS2D01G532300.1	Wheat	plastid	53.88	54.5
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	15.76	54.39
TraesCS2D01G532500.1	Wheat	plastid	46.63	53.97
TraesCS1D01G056600.1	Wheat	mitochondrion	13.85	53.96
TraesCS1D01G069100.1	Wheat	mitochondrion	43.58	53.34
KXG35774	Sorghum	cytosol, mitochondrion	31.77	52.85
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	50.95	52.35
TraesCS6D01G083100.1	Wheat	cytosol	31.77	51.02
TraesCS6D01G083300.1	Wheat	mitochondrion	28.84	50.9
TraesCS1D01G076900.1	Wheat	plastid	42.31	50.68
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	30.75	50.31
TraesCS6D01G083400.1	Wheat	mitochondrion	31.39	50.1
TraesCS6D01G017800.1	Wheat	cytosol	32.66	47.86
TraesCS6D01G017700.1	Wheat	plastid	32.4	47.75
TraesCS7D01G231400.1	Wheat	cytosol, plastid	24.02	46.9
Os04t0349600-01	Rice	plastid	23.0	46.77
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	41.55	45.73
Os04t0351333-00	Rice	cytosol	50.06	44.82
TraesCS6D01G047700.1	Wheat	mitochondrion	34.43	39.22
TraesCS6D01G076500.1	Wheat	plastid	22.49	39.07
KRH39004	Soybean	cytosol	21.22	33.6
KRH39054	Soybean	cytosol	20.84	33.0
KRH39074	Soybean	cytosol	20.58	32.6
KRH39072	Soybean	cytosol	20.46	32.46
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.57	32.29
KRH39057	Soybean	cytosol	20.33	32.19
Solyc06g007280.2.1	Tomato	cytosol	10.42	32.16
KRH39112	Soybean	cytosol	19.95	31.59
KRH09084	Soybean	plastid	20.46	31.51
Bra027636.1-P	Field mustard	cytosol	12.96	31.48
VIT_14s0081g00110.t01	Wine grape	cytosol	19.06	30.55
KRH39066	Soybean	cytosol	21.22	30.09
PGSC0003DMT400052977	Potato	cytosol	14.87	30.08
Bra027029.1-P	Field mustard	mitochondrion	9.28	30.04
KRH48615	Soybean	mitochondrion	20.71	29.91
AT5G16640.1	Thale cress	mitochondrion	18.93	29.56
KRH40513	Soybean	plastid	13.09	29.34
KRH17148	Soybean	mitochondrion	20.2	29.17
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.68	29.11
KRH09154	Soybean	mitochondrion	20.46	28.96
KRH08636	Soybean	cytosol	19.06	28.74
Bra036649.1-P	Field mustard	cytosol	14.23	28.64
VIT_14s0081g00270.t01	Wine grape	plastid	21.09	28.62
VIT_14s0081g00120.t01	Wine grape	plastid	21.09	28.47
KRH41817	Soybean	mitochondrion	19.95	28.29
KRH08628	Soybean	plastid	19.82	28.26
Bra006187.1-P	Field mustard	plastid	10.42	28.18
Bra026882.1-P	Field mustard	cytosol	19.06	28.09
KRH08671	Soybean	cytosol, mitochondrion	19.7	28.03
Solyc06g007810.1.1	Tomato	cytosol	9.53	27.99
KRH08625	Soybean	plastid	20.46	27.95
KRH08277	Soybean	plastid	20.08	27.87
Bra036651.1-P	Field mustard	mitochondrion	18.93	27.85
Solyc06g005220.2.1	Tomato	cytosol	14.36	27.83
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.55	27.81
KRH08639	Soybean	mitochondrion, plastid	19.95	27.79
KRH09121	Soybean	mitochondrion	18.81	27.72
AT3G16710.1	Thale cress	mitochondrion	17.79	27.61
KRH25652	Soybean	cytosol, golgi	18.93	27.59
Bra021192.1-P	Field mustard	plastid	17.66	27.58
KRH40400	Soybean	plastid	20.08	27.38
AT1G63330.2	Thale cress	cytosol	19.44	27.37
Bra026884.1-P	Field mustard	cytosol	15.88	27.23
KRH31646	Soybean	cytosol	17.92	27.22
AT1G64583.1	Thale cress	mitochondrion	17.66	27.15
VIT_14s0030g02280.t01	Wine grape	plastid	19.31	27.09
PGSC0003DMT400008759	Potato	cytosol	10.93	26.96
PGSC0003DMT400008757	Potato	cytosol	17.03	26.91
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.22	26.89
KRH39050	Soybean	mitochondrion	18.17	26.88
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.73	26.76
KRH09082	Soybean	cytosol	13.85	26.72
Bra031731.1-P	Field mustard	mitochondrion	17.15	26.57
KRH08607	Soybean	cytosol	18.93	26.56
KRH09097	Soybean	plastid	19.57	26.42
AT1G64580.1	Thale cress	mitochondrion	17.53	26.39
AT1G63130.1	Thale cress	mitochondrion	21.09	26.35
Bra026971.1-P	Field mustard	mitochondrion	20.97	26.23
AT1G06580.1	Thale cress	mitochondrion	16.65	26.2
AT1G62720.1	Thale cress	mitochondrion	16.14	26.19
AT1G62910.1	Thale cress	mitochondrion	20.97	26.11
AT1G62930.1	Thale cress	plastid	20.84	26.07
AT1G62680.2	Thale cress	plastid	18.04	25.91
Bra026958.1-P	Field mustard	mitochondrion	20.97	25.9
AT1G62670.1	Thale cress	mitochondrion	20.71	25.87
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.26	25.86
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.33	25.85
PGSC0003DMT400025067	Potato	cytosol	15.63	25.84
Bra027026.1-P	Field mustard	mitochondrion	17.15	25.81
KRH09095	Soybean	plastid	19.19	25.81
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.79	25.78
Solyc06g007740.1.1	Tomato	cytosol	19.31	25.76
AT1G63400.1	Thale cress	cytosol, plastid	18.81	25.65
AT1G12300.1	Thale cress	mitochondrion	20.71	25.59
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.5	25.58
AT1G63080.3	Thale cress	mitochondrion	19.95	25.57
PGSC0003DMT400025074	Potato	cytosol	17.92	25.54
Solyc06g007300.1.1	Tomato	extracellular	19.19	25.51
PGSC0003DMT400053185	Potato	mitochondrion	19.06	25.42
AT1G12700.2	Thale cress	cytosol	19.95	25.4
Bra028267.1-P	Field mustard	mitochondrion	20.2	25.4
AT1G63070.1	Thale cress	mitochondrion	18.93	25.25
CDX68679	Canola	cytosol	3.68	25.22
Bra016762.1-P	Field mustard	mitochondrion	19.44	25.21
AT1G62914.1	Thale cress	mitochondrion	16.9	25.19
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.46	25.0
PGSC0003DMT400052971	Potato	mitochondrion	18.81	24.96
Bra027726.1-P	Field mustard	mitochondrion	14.87	24.84
AT1G62590.1	Thale cress	mitochondrion	19.95	24.76
AT1G63150.1	Thale cress	mitochondrion	19.7	24.64
PGSC0003DMT400053556	Potato	mitochondrion	14.36	24.62
Solyc04g080120.1.1	Tomato	extracellular	19.06	24.51
PGSC0003DMT400056663	Potato	plastid	18.3	24.49
AT5G41170.1	Thale cress	mitochondrion	16.39	24.48
PGSC0003DMT400056665	Potato	mitochondrion	18.17	24.28
Bra026954.1-P	Field mustard	mitochondrion	19.95	24.15
Bra026401.1-P	Field mustard	plastid	16.39	24.11
PGSC0003DMT400015293	Potato	mitochondrion	18.68	24.1
PGSC0003DMT400015298	Potato	mitochondrion	18.68	24.1
PGSC0003DMT400008760	Potato	mitochondrion	17.79	23.89
PGSC0003DMT400053182	Potato	cytosol	18.17	23.87
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.87	23.83
AT4G26800.2	Thale cress	mitochondrion, plastid	15.5	23.74
Bra026957.1-P	Field mustard	mitochondrion	17.92	23.38
KRH08599	Soybean	cytosol, plastid	19.82	23.32
VIT_14s0030g02260.t01	Wine grape	cytosol	12.83	22.8
KRH09085	Soybean	mitochondrion	20.33	22.73
AT1G64100.2	Thale cress	cytosol	21.73	21.22
KRH12873	Soybean	cytosol	17.66	19.97
KRH39064	Soybean	cytosol	22.87	18.58
Bra027656.1-P	Field mustard	cytosol	21.09	17.64
Bra016758.1-P	Field mustard	plastid	19.7	13.37

Protein Annotations

EnsemblPlants:TraesCS1D01G033100.1	EnsemblPlantsGene:TraesCS1D01G033100	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1D:+:13262442..13264805

Molecular Weight (calculated)

86840.9 Da

IEP (calculated)

8.326

GRAVY (calculated)

0.018

Length

787 amino acids

Sequence
(BLAST)

001: MPRFSSTTPM APPRLLLRLG ARHSSSTSHP SRIWDPHAAF AAAADRARSG NLTPEDAHHL FDELLRQGNP VQERPLNNFL AALARAPASA SCSDCPALAV
101: ALFGRISQGA GRRVAQPTAC TYGILMDCCC RAHRLDLAFA FFARLLRTGL KADQVVFSTL LKGLCHAKRA DEALDVLLDR MPELGCTPDV VAYNTVIHGF
201: FREGQVGKAC DLFHEMAQQG VTPDVVTYNS VIDALCKAKA MDKAEYFLGQ MVDSGVVPNN VTYNSLIHGY SSSGHSKEAV RVLKKMTSQG IIPDVFTCNS
301: LMASLCNNRK SKEAAEIFHS MAMKGLKPDI VSYSTLLHGY ATEGCLVDMT NLFNSMTRDG IRPDCHTLNI LINAYAKSGM MDEAMLIFKG MRKQGVSPDL
401: VTYSTLIHAF CRNGRLDDAV IKFNQMIDTG VRPDASVYCS LIQGFCTHGD LVKSKELVTE MRNKGMRPPD IKVFHSAMQN LCTEGRVTKA RDILDLMVHI
501: GMRPDVFTFS LLIGGYCLVW KMEDASKIFD DMVSYGLEPS NITYGILING YCKNKRIDDG LILFKTMLHK GLKPTTFNYN IILDGLFLAG RTVAAKEKFN
601: EMVESGVSVC IDTCSIVLGG LCKNSCSSEA ITLFQKLSTM NVKFDITVVN IIIGAFYRVK RNQEAKDLFA AILANGLVPN AVTYTIMMTN LIKEGSVEEA
701: DYLFLSMEKS GCTANSCMLN HIIRRLLEKG EIVKAGNYMS KVDAKSFSLE AKTVSLLISL FSRKGKYREH IKLLPTKYQF LEEATVE

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.