Factsheet for TraesCS2D01G532300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G532500.1	Wheat	plastid	77.76	88.97
TraesCS2A01G526200.1	Wheat	golgi	77.64	88.69
TraesCS2D01G532200.1	Wheat	cytosol	33.16	88.05
TraesCS2D01G532600.1	Wheat	plastid	86.76	86.98
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	73.65	86.95
TraesCS2D01G532400.1	Wheat	cytosol	68.25	86.91
TraesCS2D01G532100.1	Wheat	mitochondrion	76.22	85.69
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	45.37	80.41
TraesCS1D01G058400.1	Wheat	cytosol	38.05	57.48
TraesCS1D01G057700.1	Wheat	cytosol	22.88	54.77
TraesCS1D01G058500.1	Wheat	plastid	39.85	54.39
TraesCS1D01G056200.1	Wheat	mitochondrion	57.58	54.3
TraesCS1D01G068700.1	Wheat	cytosol	30.59	54.21
TraesCS1D01G076700.1	Wheat	cytosol	23.26	54.19
TraesCS1D01G068600.1	Wheat	plastid	23.65	54.12
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	54.88	53.91
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	54.5	53.88
TraesCS1D01G068900.1	Wheat	mitochondrion	56.04	53.63
TraesCS1D01G068500.1	Wheat	mitochondrion	55.66	53.33
TraesCS1D01G076500.1	Wheat	mitochondrion	45.5	53.31
TraesCS1D01G068400.1	Wheat	mitochondrion	56.3	53.22
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	47.3	52.8
TraesCS1D01G055300.1	Wheat	cytosol	41.9	52.75
TraesCS1D01G068800.1	Wheat	plastid	55.27	52.7
TraesCS1D01G056700.1	Wheat	cytosol	41.0	52.55
TraesCS1D01G056600.1	Wheat	mitochondrion	13.5	51.98
TraesCS1D01G058000.1	Wheat	cytosol	26.99	51.72
TraesCS1D01G033000.1	Wheat	cytosol	26.74	51.49
TraesCS6D01G290900.1	Wheat	mitochondrion	48.46	51.43
TraesCS1D01G067600.1	Wheat	cytosol	23.91	50.96
TraesCS1D01G069100.1	Wheat	mitochondrion	42.03	50.86
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	43.32	50.07
TraesCS1D01G057800.1	Wheat	mitochondrion	23.26	49.86
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	14.14	48.25
TraesCS7D01G231400.1	Wheat	cytosol, plastid	24.94	48.14
TraesCS6D01G017800.1	Wheat	cytosol	33.03	47.86
TraesCS6D01G083400.1	Wheat	mitochondrion	30.21	47.67
TraesCS6D01G083100.1	Wheat	cytosol	29.95	47.55
TraesCS6D01G083300.1	Wheat	mitochondrion	27.25	47.53
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	20.82	47.37
TraesCS6D01G017700.1	Wheat	plastid	32.39	47.19
TraesCS1D01G076900.1	Wheat	plastid	39.59	46.88
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	41.9	45.59
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	28.15	45.53
TraesCS1D01G076400.1	Wheat	cytosol	20.82	44.63
TraesCS6D01G076500.1	Wheat	plastid	23.14	39.74
TraesCS6D01G047700.1	Wheat	mitochondrion	34.19	38.49
Solyc06g007280.2.1	Tomato	cytosol	10.8	32.94
VIT_14s0081g00110.t01	Wine grape	cytosol	19.41	30.75
PGSC0003DMT400052977	Potato	cytosol	15.17	30.33
KRH40513	Soybean	plastid	13.5	29.91
KRH39112	Soybean	cytosol	19.02	29.78
KRH39054	Soybean	cytosol	18.89	29.58
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.12	29.56
KRH39057	Soybean	cytosol	18.77	29.38
KRH39074	Soybean	cytosol	18.77	29.38
KRH08636	Soybean	cytosol	19.54	29.12
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.89	29.11
KRH09084	Soybean	plastid	19.02	28.96
KRH39004	Soybean	cytosol	18.38	28.77
Solyc06g005220.2.1	Tomato	cytosol	14.91	28.57
VIT_14s0081g00270.t01	Wine grape	plastid	21.21	28.45
KRH31646	Soybean	cytosol	18.89	28.38
VIT_14s0081g00120.t01	Wine grape	plastid	21.21	28.3
KRH39072	Soybean	cytosol	17.99	28.23
KRH08671	Soybean	cytosol, mitochondrion	20.05	28.21
KRH17148	Soybean	mitochondrion	19.67	28.07
Bra006187.1-P	Field mustard	plastid	10.41	27.84
CDX68679	Canola	cytosol	4.11	27.83
KRH39050	Soybean	mitochondrion	19.02	27.82
AT5G16640.1	Thale cress	mitochondrion	17.99	27.78
KRH08607	Soybean	cytosol	19.92	27.63
KRH08639	Soybean	mitochondrion, plastid	20.05	27.61
KRH39066	Soybean	cytosol	19.67	27.57
KRH08628	Soybean	plastid	19.54	27.54
KRH08277	Soybean	plastid	19.92	27.34
Solyc06g007810.1.1	Tomato	cytosol	9.38	27.24
KRH48615	Soybean	mitochondrion	19.02	27.16
Bra036649.1-P	Field mustard	cytosol	13.62	27.11
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.25	27.05
KRH40400	Soybean	plastid	20.05	27.04
Bra027636.1-P	Field mustard	cytosol	11.18	26.85
KRH09154	Soybean	mitochondrion	19.15	26.8
KRH08625	Soybean	plastid	19.79	26.74
KRH09121	Soybean	mitochondrion	18.12	26.4
PGSC0003DMT400008759	Potato	cytosol	10.8	26.33
Bra036651.1-P	Field mustard	mitochondrion	17.99	26.17
Bra026882.1-P	Field mustard	cytosol	17.87	26.03
AT1G06580.1	Thale cress	mitochondrion	16.71	26.0
KRH09082	Soybean	cytosol	13.62	25.98
KRH41817	Soybean	mitochondrion	18.51	25.95
Bra027029.1-P	Field mustard	mitochondrion	8.1	25.93
KRH25652	Soybean	cytosol, golgi	17.99	25.93
PGSC0003DMT400025074	Potato	cytosol	18.38	25.91
PGSC0003DMT400008757	Potato	cytosol	16.58	25.9
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.21	25.82
AT1G64580.1	Thale cress	mitochondrion	17.35	25.81
AT1G64583.1	Thale cress	mitochondrion	16.97	25.78
PGSC0003DMT400053185	Potato	mitochondrion	19.54	25.76
Solyc06g007300.1.1	Tomato	extracellular	19.54	25.68
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.32	25.66
AT1G62670.1	Thale cress	mitochondrion	20.69	25.56
AT1G62680.2	Thale cress	plastid	17.99	25.55
Solyc06g007740.1.1	Tomato	cytosol	19.28	25.42
PGSC0003DMT400025067	Potato	cytosol	15.55	25.42
Bra021192.1-P	Field mustard	plastid	16.45	25.4
AT1G62720.1	Thale cress	mitochondrion	15.81	25.36
AT1G63400.1	Thale cress	cytosol, plastid	18.77	25.3
AT3G16710.1	Thale cress	mitochondrion	16.45	25.25
AT1G63080.3	Thale cress	mitochondrion	19.92	25.24
AT1G63330.2	Thale cress	cytosol	18.12	25.22
VIT_14s0030g02280.t01	Wine grape	plastid	18.12	25.13
KRH09095	Soybean	plastid	18.89	25.13
AT1G63130.1	Thale cress	mitochondrion	20.31	25.08
PGSC0003DMT400052971	Potato	mitochondrion	19.02	24.96
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.3	24.95
Bra027026.1-P	Field mustard	mitochondrion	16.71	24.86
AT1G62930.1	Thale cress	plastid	20.05	24.8
AT1G63070.1	Thale cress	mitochondrion	18.77	24.75
Bra026884.1-P	Field mustard	cytosol	14.4	24.4
KRH09097	Soybean	plastid	18.25	24.36
AT1G12300.1	Thale cress	mitochondrion	19.92	24.33
Bra026971.1-P	Field mustard	mitochondrion	19.67	24.32
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.41	24.32
AT1G62914.1	Thale cress	mitochondrion	16.45	24.24
Solyc04g080120.1.1	Tomato	extracellular	19.02	24.18
AT5G41170.1	Thale cress	mitochondrion	16.32	24.1
AT1G62910.1	Thale cress	mitochondrion	19.54	24.05
Bra031731.1-P	Field mustard	mitochondrion	15.68	24.02
PGSC0003DMT400053556	Potato	mitochondrion	14.14	23.97
PGSC0003DMT400015293	Potato	mitochondrion	18.77	23.93
PGSC0003DMT400015298	Potato	mitochondrion	18.77	23.93
Bra026958.1-P	Field mustard	mitochondrion	19.54	23.86
AT1G63150.1	Thale cress	mitochondrion	19.28	23.85
PGSC0003DMT400056665	Potato	mitochondrion	17.99	23.77
PGSC0003DMT400056663	Potato	plastid	17.74	23.47
AT1G62590.1	Thale cress	mitochondrion	19.02	23.34
Bra028267.1-P	Field mustard	mitochondrion	18.77	23.32
PGSC0003DMT400053182	Potato	cytosol	17.87	23.21
AT3G22470.1	Thale cress	cytosol, mitochondrion	18.38	23.1
Bra026954.1-P	Field mustard	mitochondrion	19.28	23.08
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.07	23.02
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.02	22.98
AT4G26800.2	Thale cress	mitochondrion, plastid	15.04	22.76
PGSC0003DMT400008760	Potato	mitochondrion	16.97	22.53
Bra016762.1-P	Field mustard	mitochondrion	17.48	22.41
Bra027726.1-P	Field mustard	mitochondrion	13.5	22.29
AT1G12700.2	Thale cress	cytosol	17.61	22.17
Bra026401.1-P	Field mustard	plastid	15.17	22.06
KRH08599	Soybean	cytosol, plastid	18.77	21.82
Bra026957.1-P	Field mustard	mitochondrion	16.84	21.72
VIT_14s0030g02260.t01	Wine grape	cytosol	12.34	21.67
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.62	21.59
KRH09085	Soybean	mitochondrion	18.77	20.74
AT1G64100.2	Thale cress	cytosol	20.31	19.6
KRH12873	Soybean	cytosol	15.81	17.67
Bra027656.1-P	Field mustard	cytosol	21.21	17.53
KRH39064	Soybean	cytosol	19.79	15.89
Bra016758.1-P	Field mustard	plastid	17.61	11.82

Protein Annotations

EnsemblPlants:TraesCS2D01G532300.1	EnsemblPlantsGene:TraesCS2D01G532300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:617633812..617636148

Molecular Weight (calculated)

85088.9 Da

IEP (calculated)

7.771

GRAVY (calculated)

0.132

Length

778 amino acids

Sequence
(BLAST)

001: MPTGRLSSIF TSNATSSFRA PSPQPRAPLA ALAAATERVC DGTLRPEEAH HLFDELLSQA AAVPERGLNN FLAALAHAPP SSTCSDGPGL AIALFNRMSR
101: GAGARVVSPT LCTYSILMDC CCRAGRPDLV VAFFGRLLRL GLCLNVISFN NLLKGLCQVK RTNEAVDLLL HRTPELDCVP NVFSYSIVIN GCFKQGEVDK
201: ACNLFHQMIQ LGVQPNLVIY NSIIDALSKS GAMDKAEVVL RQMVDQGIEP NIRTYTSLIH GYSASGQWKA AARVFKEMVS VGVLPDAVAW NSFMDSLCKH
301: RRTKDARVIF DSMAAKGQKP NIVSYSIMLN GYAKEGYFDD MTGLFNLMLQ NGIVPNHHVF NILINAYSKR GLMDEAMHMF EVMRQQGVNP DVFGYQIVMD
401: SLCKMGRVDA ALDKFNQMVN QGVSPNKAVY QCLVLGSCSN GDFVKAKELI SEAVNRGLCS NSVFFYPVIN NLSKEGKVKD AQDMFDFIVG IGRPPDVIMY
501: NSLMDGYCLV GKVEEALRVL DAMKSAGLQP DAFTYGILLN GYCKIGRIAD GLSLFREMSL SGVKPTAIMY NIILDGLFRS GRAVSAKEKF CTMSESGIPV
601: GIGTYNIVLH GLCRNNCTDE AIELFNKLRA MKLKINVITI NTMISAMFKT RRIEEAKDLF ATISAIGLVP SVVTYSVMMT NFIKEGLLAE ADDMFLAMEK
701: AGCAPDSRLL NHVVRVLLEN GAVVKAATYL AKLDANHLSL EVSTISLIVS LFSGEGKLRE HVELLPVKYQ PPESSADN

Best Arabidopsis Sequence Match ( AT3G22470.1 )
(BLAST)

001: MIQRLIPLNR KASNFTQILE KGTSLLHYSS ITEAKLSYKE RLRNGIVDIK VNDAIDLFES MIQSRPLPTP IDFNRLCSAV ARTKQYDLVL GFCKGMELNG
101: IEHDMYTMTI MINCYCRKKK LLFAFSVLGR AWKLGYEPDT ITFSTLVNGF CLEGRVSEAV ALVDRMVEMK QRPDLVTVST LINGLCLKGR VSEALVLIDR
201: MVEYGFQPDE VTYGPVLNRL CKSGNSALAL DLFRKMEERN IKASVVQYSI VIDSLCKDGS FDDALSLFNE MEMKGIKADV VTYSSLIGGL CNDGKWDDGA
301: KMLREMIGRN IIPDVVTFSA LIDVFVKEGK LLEAKELYNE MITRGIAPDT ITYNSLIDGF CKENCLHEAN QMFDLMVSKG CEPDIVTYSI LINSYCKAKR
401: VDDGMRLFRE ISSKGLIPNT ITYNTLVLGF CQSGKLNAAK ELFQEMVSRG VPPSVVTYGI LLDGLCDNGE LNKALEIFEK MQKSRMTLGI GIYNIIIHGM
501: CNASKVDDAW SLFCSLSDKG VKPDVVTYNV MIGGLCKKGS LSEADMLFRK MKEDGCTPDD FTYNILIRAH LGGSGLISSV ELIEEMKVCG FSADSSTIKM
601: VIDMLSDRRL DKSFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ83]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.