Factsheet for TraesCS6D01G017800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G017700.1	Wheat	plastid	76.35	76.78
HORVU1Hr1G018190.2	Barley	cytosol	35.94	67.72
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	87.52	65.73
HORVU6Hr1G002890.6	Barley	cytosol, plastid	80.26	54.21
TraesCSU01G089700.1	Wheat	mitochondrion	47.86	53.32
TraesCS6D01G047700.1	Wheat	mitochondrion	61.45	47.76
Os10t0501700-00	Rice	cytosol	40.04	47.36
Os10t0497366-00	Rice	mitochondrion	33.52	44.89
TraesCS1D01G058400.1	Wheat	cytosol	40.22	41.94
TraesCS1D01G055300.1	Wheat	cytosol	47.86	41.59
TraesCS1D01G056700.1	Wheat	cytosol	46.18	40.86
TraesCS1D01G068700.1	Wheat	cytosol	32.59	39.86
TraesCS2D01G532400.1	Wheat	cytosol	45.25	39.77
TraesCS2D01G533000.1	Wheat	cytosol, extracellular	48.42	39.45
TraesCS1D01G033000.1	Wheat	cytosol	29.42	39.11
TraesCS6D01G076500.1	Wheat	plastid	32.96	39.07
Os10t0497300-01	Rice	mitochondrion	57.54	38.92
Zm00001d009733_P001	Maize	cytosol	56.98	38.49
TraesCS2D01G532500.1	Wheat	plastid	48.04	37.94
Os10t0495200-01	Rice	mitochondrion	55.12	37.85
TraesCS1D01G067600.1	Wheat	cytosol	25.7	37.81
TraesCS1D01G057700.1	Wheat	cytosol	22.72	37.54
TraesCS1D01G076500.1	Wheat	mitochondrion	46.37	37.5
TraesCS2D01G532100.1	Wheat	mitochondrion	47.86	37.14
TraesCS1D01G076700.1	Wheat	cytosol	22.91	36.83
TraesCS2D01G532200.1	Wheat	cytosol	19.93	36.52
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	45.62	36.4
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	46.55	35.87
KXG34536	Sorghum	mitochondrion	38.17	35.84
TraesCS1D01G058000.1	Wheat	cytosol	27.0	35.71
OQU88594	Sorghum	cytosol	34.26	35.25
Os08t0107800-01	Rice	mitochondrion	40.41	34.78
Zm00001d018982_P001	Maize	mitochondrion	22.35	34.29
Os08t0110200-01	Rice	mitochondrion	50.65	34.09
Solyc06g007280.2.1	Tomato	cytosol	16.01	33.73
EER95949	Sorghum	mitochondrion	40.97	33.18
TraesCS2D01G532600.1	Wheat	plastid	47.86	33.12
TraesCS1D01G076400.1	Wheat	cytosol	22.35	33.06
TraesCS2D01G532300.1	Wheat	plastid	47.86	33.03
Os10t0495100-01	Rice	cytosol, mitochondrion	28.12	32.75
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	47.86	32.66
TraesCS1D01G068500.1	Wheat	mitochondrion	48.98	32.39
TraesCS1D01G068900.1	Wheat	mitochondrion	48.98	32.35
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	47.67	32.32
TraesCS1D01G068800.1	Wheat	plastid	48.6	31.99
TraesCS1D01G056200.1	Wheat	mitochondrion	47.86	31.15
Zm00001d009735_P001	Maize	cytosol	56.42	31.14
TraesCS1D01G068400.1	Wheat	mitochondrion	47.11	30.74
Os10t0499500-01	Rice	mitochondrion	28.86	30.63
TraesCS6D01G290900.1	Wheat	mitochondrion	40.97	30.01
PGSC0003DMT400052977	Potato	cytosol	21.42	29.56
Os08t0248400-01	Rice	mitochondrion	24.21	29.55
TraesCS6D01G083300.1	Wheat	mitochondrion	24.39	29.37
TraesCS1D01G069100.1	Wheat	mitochondrion	34.45	28.77
Solyc06g005220.2.1	Tomato	cytosol	21.6	28.57
TraesCS1D01G076900.1	Wheat	plastid	33.89	27.7
Solyc06g007810.1.1	Tomato	cytosol	13.78	27.61
TraesCS6D01G083400.1	Wheat	mitochondrion	25.14	27.38
TraesCS6D01G083100.1	Wheat	cytosol	24.77	27.14
Bra027636.1-P	Field mustard	cytosol	16.01	26.54
Bra027029.1-P	Field mustard	mitochondrion	11.92	26.34
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	23.46	26.2
PGSC0003DMT400008759	Potato	cytosol	15.46	26.02
TraesCS1D01G058500.1	Wheat	plastid	27.37	25.79
KRH39074	Soybean	cytosol	23.65	25.55
Bra026884.1-P	Field mustard	cytosol	21.79	25.49
KRH09082	Soybean	cytosol	19.18	25.25
KRH39054	Soybean	cytosol	23.09	24.95
VIT_14s0081g00110.t01	Wine grape	cytosol	22.72	24.85
TraesCS7D01G231400.1	Wheat	cytosol, plastid	18.62	24.81
KRH40513	Soybean	plastid	16.01	24.5
Os08t0107700-01	Rice	cytosol, mitochondrion	16.95	24.33
Bra036649.1-P	Field mustard	cytosol	17.69	24.3
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	22.72	24.16
KRH39004	Soybean	cytosol	22.35	24.14
KRH39057	Soybean	cytosol	22.35	24.14
KRH39050	Soybean	mitochondrion	23.84	24.06
Bra006187.1-P	Field mustard	plastid	13.04	24.05
OQU88581	Sorghum	cytosol	48.6	24.01
KRH39072	Soybean	cytosol	22.16	23.99
PGSC0003DMT400025067	Potato	cytosol	21.23	23.95
VIT_12s0028g02320.t01	Wine grape	mitochondrion	21.23	23.9
KRH39112	Soybean	cytosol	21.97	23.74
KRH08636	Soybean	cytosol	22.91	23.56
PGSC0003DMT400025087	Potato	endoplasmic reticulum	21.6	23.43
PGSC0003DMT400008757	Potato	cytosol	21.42	23.09
KRH31646	Soybean	cytosol	21.97	22.78
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	22.16	22.67
CDX68679	Canola	cytosol	4.84	22.61
AT1G63330.2	Thale cress	cytosol	23.46	22.54
Solyc06g007300.1.1	Tomato	extracellular	24.58	22.3
KRH08671	Soybean	cytosol, mitochondrion	22.91	22.24
KRH25652	Soybean	cytosol, golgi	22.35	22.22
KRH08607	Soybean	cytosol	23.09	22.1
KRH08628	Soybean	plastid	22.53	21.92
KRH40400	Soybean	plastid	23.28	21.66
KRH41817	Soybean	mitochondrion	22.35	21.62
VIT_14s0081g00120.t01	Wine grape	plastid	23.46	21.61
KRH08639	Soybean	mitochondrion, plastid	22.72	21.59
VIT_14s0081g00270.t01	Wine grape	plastid	23.28	21.55
KRH08625	Soybean	plastid	23.09	21.53
KRH09084	Soybean	plastid	20.48	21.53
Solyc06g007740.1.1	Tomato	cytosol	23.65	21.53
KRH17148	Soybean	mitochondrion	21.79	21.47
PGSC0003DMT400025074	Potato	cytosol	21.97	21.38
KRH39066	Soybean	cytosol	21.97	21.26
KRH08277	Soybean	plastid	22.35	21.16
KRH48615	Soybean	mitochondrion	21.42	21.1
PGSC0003DMT400052971	Potato	mitochondrion	23.28	21.08
PGSC0003DMT400053185	Potato	mitochondrion	23.09	21.02
Bra031731.1-P	Field mustard	mitochondrion	19.74	20.87
KRH09121	Soybean	mitochondrion	20.67	20.79
Bra025516.1-P	Field mustard	cytosol, mitochondrion	18.44	20.75
Bra026882.1-P	Field mustard	cytosol	20.11	20.22
PGSC0003DMT400056665	Potato	mitochondrion	22.16	20.2
VIT_14s0081g00280.t01	Wine grape	mitochondrion	24.02	20.19
KRH09154	Soybean	mitochondrion	20.86	20.14
AT1G63080.3	Thale cress	mitochondrion	22.91	20.03
PGSC0003DMT400015293	Potato	mitochondrion	22.72	20.0
PGSC0003DMT400015298	Potato	mitochondrion	22.72	20.0
PGSC0003DMT400008760	Potato	mitochondrion	21.79	19.97
PGSC0003DMT400056663	Potato	plastid	21.79	19.9
Bra027658.1-P	Field mustard	cytosol, mitochondrion	20.11	19.89
AT1G62590.1	Thale cress	mitochondrion	23.46	19.87
AT3G22470.1	Thale cress	cytosol, mitochondrion	22.91	19.87
AT1G63070.1	Thale cress	mitochondrion	21.79	19.83
Solyc04g080120.1.1	Tomato	extracellular	22.53	19.77
AT1G62930.1	Thale cress	plastid	23.09	19.71
VIT_14s0030g02280.t01	Wine grape	plastid	20.48	19.61
AT3G16710.1	Thale cress	mitochondrion	18.44	19.53
AT1G62670.1	Thale cress	mitochondrion	22.91	19.52
AT1G63130.1	Thale cress	mitochondrion	22.91	19.52
AT1G62910.1	Thale cress	mitochondrion	22.91	19.46
AT1G63400.1	Thale cress	cytosol, plastid	20.86	19.41
PGSC0003DMT400053182	Potato	cytosol	21.6	19.37
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	12.29	19.3
TraesCS1D01G057800.1	Wheat	mitochondrion	13.04	19.28
AT5G16640.1	Thale cress	mitochondrion	18.06	19.25
AT1G63150.1	Thale cress	mitochondrion	22.35	19.08
VIT_14s0030g02260.t01	Wine grape	cytosol	15.64	18.96
Bra026958.1-P	Field mustard	mitochondrion	22.35	18.84
Bra028267.1-P	Field mustard	mitochondrion	21.79	18.69
KRH08599	Soybean	cytosol, plastid	23.28	18.68
AT1G12700.2	Thale cress	cytosol	21.42	18.61
Bra026971.1-P	Field mustard	mitochondrion	21.79	18.6
AT1G62720.1	Thale cress	mitochondrion	16.76	18.56
PGSC0003DMT400053556	Potato	mitochondrion	15.83	18.52
Bra021192.1-P	Field mustard	plastid	17.32	18.45
AT1G12620.1	Thale cress	cytosol, mitochondrion	21.23	18.36
Bra036651.1-P	Field mustard	mitochondrion	18.25	18.32
KRH09095	Soybean	plastid	19.93	18.29
Bra016762.1-P	Field mustard	mitochondrion	20.67	18.29
Bra026957.1-P	Field mustard	mitochondrion	20.48	18.24
TraesCS1D01G068600.1	Wheat	plastid	11.55	18.24
Bra026954.1-P	Field mustard	mitochondrion	21.97	18.15
AT5G41170.1	Thale cress	mitochondrion	17.69	18.03
AT1G64583.1	Thale cress	mitochondrion	17.13	17.97
AT1G12300.1	Thale cress	mitochondrion	21.23	17.9
KRH09097	Soybean	plastid	19.37	17.84
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.2	17.72
AT1G62680.2	Thale cress	plastid	18.06	17.7
AT1G62914.1	Thale cress	mitochondrion	17.32	17.61
AT1G06580.1	Thale cress	mitochondrion	16.39	17.6
AT1G64580.1	Thale cress	mitochondrion	17.13	17.59
Bra027026.1-P	Field mustard	mitochondrion	16.95	17.4
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.48	17.08
KRH12873	Soybean	cytosol	21.6	16.67
AT4G26800.2	Thale cress	mitochondrion, plastid	15.46	16.15
AT1G64100.2	Thale cress	cytosol	24.02	16.0
Bra026401.1-P	Field mustard	plastid	15.46	15.51
KRH09085	Soybean	mitochondrion	20.3	15.48
Bra027726.1-P	Field mustard	mitochondrion	13.22	15.07
Os10t0497432-01	Rice	mitochondrion	7.26	14.66
Bra027656.1-P	Field mustard	cytosol	24.77	14.13
KRH39064	Soybean	cytosol	23.46	13.0
Bra016758.1-P	Field mustard	plastid	20.86	9.66
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	0.74	1.75
TraesCS1D01G056600.1	Wheat	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6D01G017800.1	EnsemblPlantsGene:TraesCS6D01G017800	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF955
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:7357357..7358970

Molecular Weight (calculated)

60242.2 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.066

Length

537 amino acids

Sequence
(BLAST)

001: MVEHGGSCQP NVVTYSTVID GLLTEGEVNK AYSLFCEMLQ RGISPNVVTC SSIISGMCKL HAMDKAEEVL QQMFERRILP DVATYTSLIH GYYSLGQCKE
101: VDWILWEMSR NGVQPDIVTY NIQMDYLCKS GRCAKARKIF DSMVGLGQKP DVTTYNVLLH GYAMERSFHD MNCLIELMDD NGISPDHYGY NILISAYAKE
201: KMVDEVMHIF TKMRQQGLNP DVVNYGAAVN LLSKIGRMDD AMSQFNQMIT EGLAPDIIVF TPLISGFCSC GKWEKVDELF SEMLDRGICP NTVFFNTIMD
301: RLCKNERVME AQDLFDLMVH MGVKPDVCTY NTLIGGYLFV GKMDEVSKLL DNMVSIGMEP DVITYNILID GYSKNGKIDD ALVVFRGMLE RKDKPSVITF
401: NIMIGALLKC HRKEEAKDLF DGIWAKGLVP DVVTYSLMIQ KLIEEGSLQE SDDLFLSMEK NGCAADSRML NAIVRSLLQK GDVPRAGTYL SKINERSFTL
501: EGSTATLLTA LASGGRGQEY KELLPEKYHS FLEQGID

Best Arabidopsis Sequence Match ( AT1G62910.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.