Factsheet for HORVU6Hr1G002890.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G018190.2	Barley	cytosol	34.21	95.44
TraesCS6D01G017800.1	Wheat	cytosol	54.21	80.26
TraesCS7D01G487500.1	Wheat	cytosol, mitochondrion	72.08	80.14
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	37.61	78.89
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	70.57	78.46
TraesCSU01G089800.1	Wheat	mitochondrion	34.59	78.35
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	70.31	78.18
TraesCSU01G089700.1	Wheat	mitochondrion	47.3	78.01
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	31.57	77.23
TraesCS6B01G021600.1	Wheat	mitochondrion	69.43	77.09
TraesCSU01G090200.1	Wheat	cytosol	42.77	76.92
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	69.06	76.89
TraesCS6A01G014600.1	Wheat	cytosol	38.11	76.71
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	24.4	76.68
TraesCS6A01G015000.1	Wheat	mitochondrion	39.25	75.18
TraesCS6D01G017700.1	Wheat	plastid	50.06	74.53
HORVU6Hr1G014310.1	Barley	mitochondrion	55.97	64.77
Os10t0497366-00	Rice	mitochondrion	26.92	53.37
Os08t0248400-01	Rice	mitochondrion	28.68	51.82
Os10t0495100-01	Rice	cytosol, mitochondrion	29.56	50.98
Os10t0497432-01	Rice	mitochondrion	16.98	50.75
Os10t0499500-01	Rice	mitochondrion	31.82	50.0
Os10t0497300-01	Rice	mitochondrion	49.43	49.5
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	18.49	49.49
OQU88594	Sorghum	cytosol	32.45	49.43
Os10t0495200-01	Rice	mitochondrion	48.18	48.98
Zm00001d018982_P001	Maize	mitochondrion	21.51	48.86
Os08t0107800-01	Rice	mitochondrion	37.11	47.28
Zm00001d009733_P001	Maize	cytosol	46.79	46.79
HORVU1Hr1G011250.1	Barley	cytosol	17.36	46.78
EER95949	Sorghum	mitochondrion	38.87	46.61
Os08t0107700-01	Rice	cytosol, mitochondrion	21.76	46.26
Os10t0501700-00	Rice	cytosol	26.16	45.81
Os08t0110200-01	Rice	mitochondrion	44.65	44.49
HORVU6Hr1G017870.2	Barley	mitochondrion	16.48	43.67
KXG34536	Sorghum	mitochondrion	31.32	43.53
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	34.47	42.88
HORVU0Hr1G035310.1	Barley	cytosol	31.07	42.44
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	36.48	41.49
HORVU6Hr1G076780.7	Barley	mitochondrion	41.13	39.68
HORVU1Hr1G014040.1	Barley	mitochondrion	41.26	39.38
HORVU1Hr1G004750.6	Barley	plastid	39.37	39.22
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	40.63	38.92
HORVU1Hr1G010970.1	Barley	mitochondrion	40.38	38.86
HORVU1Hr1G013810.1	Barley	plastid	40.88	38.74
Zm00001d009735_P001	Maize	cytosol	47.3	38.64
HORVU0Hr1G031920.1	Barley	plastid	41.13	38.02
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	22.77	37.71
HORVU1Hr1G010890.5	Barley	cytosol	42.01	37.19
HORVU1Hr1G011160.2	Barley	cytosol, plastid	41.64	36.98
HORVU1Hr1G011150.1	Barley	cytosol, plastid	40.88	36.81
HORVU1Hr1G014060.1	Barley	plastid	41.13	36.74
HORVU1Hr1G011300.3	Barley	plastid	41.38	35.76
HORVU1Hr1G011400.44	Barley	plastid	27.3	35.23
Solyc06g007280.2.1	Tomato	cytosol	11.07	34.51
KRH40513	Soybean	plastid	13.58	30.77
KRH39054	Soybean	cytosol	18.49	29.58
Solyc06g005220.2.1	Tomato	cytosol	15.09	29.56
VIT_12s0028g02320.t01	Wine grape	mitochondrion	17.48	29.14
KRH39050	Soybean	mitochondrion	19.5	29.14
AT1G63330.2	Thale cress	cytosol	20.38	28.98
KRH39004	Soybean	cytosol	18.11	28.97
KRH39074	Soybean	cytosol	17.99	28.77
Bra036649.1-P	Field mustard	cytosol	14.09	28.64
KRH39057	Soybean	cytosol	17.86	28.57
KRH39112	Soybean	cytosol	17.74	28.37
KRH41817	Soybean	mitochondrion	19.62	28.11
KRH39072	Soybean	cytosol	17.48	28.02
PGSC0003DMT400052977	Potato	cytosol	13.71	28.02
KRH31646	Soybean	cytosol	18.24	27.99
KRH48615	Soybean	mitochondrion	19.12	27.89
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.36	27.81
VIT_14s0081g00110.t01	Wine grape	cytosol	17.11	27.7
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.98	27.27
AT1G62930.1	Thale cress	plastid	21.38	27.03
Bra026882.1-P	Field mustard	cytosol	18.11	26.97
VIT_14s0081g00120.t01	Wine grape	plastid	19.75	26.93
KRH08636	Soybean	cytosol	17.61	26.82
AT1G63070.1	Thale cress	mitochondrion	19.87	26.78
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	16.98	26.73
VIT_14s0081g00270.t01	Wine grape	plastid	19.5	26.72
PGSC0003DMT400025067	Potato	cytosol	15.97	26.68
Solyc06g007740.1.1	Tomato	cytosol	19.75	26.61
Bra027636.1-P	Field mustard	cytosol	10.82	26.54
AT1G62670.1	Thale cress	mitochondrion	21.01	26.51
KRH39066	Soybean	cytosol	18.49	26.49
KRH17148	Soybean	mitochondrion	18.11	26.42
KRH09084	Soybean	plastid	16.98	26.42
Bra027029.1-P	Field mustard	mitochondrion	8.05	26.34
PGSC0003DMT400008757	Potato	cytosol	16.48	26.31
PGSC0003DMT400025074	Potato	cytosol	18.24	26.27
AT1G62910.1	Thale cress	mitochondrion	20.88	26.27
AT1G63150.1	Thale cress	mitochondrion	20.75	26.23
AT1G63130.1	Thale cress	mitochondrion	20.75	26.19
AT1G62590.1	Thale cress	mitochondrion	20.88	26.18
Solyc06g007300.1.1	Tomato	extracellular	19.5	26.18
AT1G63400.1	Thale cress	cytosol, plastid	18.99	26.17
Bra026884.1-P	Field mustard	cytosol	15.09	26.14
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.6	26.0
AT1G62914.1	Thale cress	mitochondrion	17.11	25.76
Solyc06g007810.1.1	Tomato	cytosol	8.68	25.75
AT1G63080.3	Thale cress	mitochondrion	19.75	25.57
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.5	25.51
KRH08671	Soybean	cytosol, mitochondrion	17.74	25.5
KRH08607	Soybean	cytosol	17.99	25.49
KRH09082	Soybean	cytosol	13.08	25.49
Bra036651.1-P	Field mustard	mitochondrion	17.11	25.42
KRH08639	Soybean	mitochondrion, plastid	17.99	25.31
PGSC0003DMT400053185	Potato	mitochondrion	18.74	25.25
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.62	25.2
KRH08628	Soybean	plastid	17.36	25.0
Bra026958.1-P	Field mustard	mitochondrion	20.0	24.96
KRH09121	Soybean	mitochondrion	16.73	24.91
Bra031731.1-P	Field mustard	mitochondrion	15.85	24.8
PGSC0003DMT400056665	Potato	mitochondrion	18.36	24.79
PGSC0003DMT400008759	Potato	cytosol	9.94	24.76
AT3G16710.1	Thale cress	mitochondrion	15.72	24.65
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.25	24.64
PGSC0003DMT400008760	Potato	mitochondrion	18.11	24.57
KRH09154	Soybean	mitochondrion	17.11	24.46
PGSC0003DMT400052971	Potato	mitochondrion	18.24	24.45
AT5G16640.1	Thale cress	mitochondrion	15.47	24.4
KRH08277	Soybean	plastid	17.36	24.34
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.6	24.31
KRH40400	Soybean	plastid	17.61	24.26
PGSC0003DMT400015293	Potato	mitochondrion	18.62	24.26
PGSC0003DMT400015298	Potato	mitochondrion	18.62	24.26
Bra026954.1-P	Field mustard	mitochondrion	19.75	24.15
AT1G62720.1	Thale cress	mitochondrion	14.72	24.12
Bra027026.1-P	Field mustard	mitochondrion	15.85	24.09
PGSC0003DMT400053182	Potato	cytosol	18.11	24.04
Bra021192.1-P	Field mustard	plastid	15.22	24.01
Bra026971.1-P	Field mustard	mitochondrion	18.99	24.01
PGSC0003DMT400056663	Potato	plastid	17.74	23.98
KRH08625	Soybean	plastid	17.36	23.96
Bra016762.1-P	Field mustard	mitochondrion	18.24	23.89
AT1G12300.1	Thale cress	mitochondrion	19.12	23.86
Solyc04g080120.1.1	Tomato	extracellular	18.36	23.86
AT1G64583.1	Thale cress	mitochondrion	15.35	23.83
Bra028267.1-P	Field mustard	mitochondrion	18.74	23.8
AT1G64580.1	Thale cress	mitochondrion	15.6	23.71
KRH25652	Soybean	cytosol, golgi	16.1	23.7
AT1G62680.2	Thale cress	plastid	16.23	23.54
PGSC0003DMT400053556	Potato	mitochondrion	13.33	23.09
Bra006187.1-P	Field mustard	plastid	8.43	23.02
VIT_14s0030g02280.t01	Wine grape	plastid	16.23	22.99
AT1G12775.1	Thale cress	cytosol, mitochondrion	18.49	22.83
AT5G41170.1	Thale cress	mitochondrion	14.97	22.58
AT1G06580.1	Thale cress	mitochondrion	14.09	22.4
KRH09095	Soybean	plastid	16.48	22.39
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.71	22.2
OQU88581	Sorghum	cytosol	30.31	22.17
AT4G26800.2	Thale cress	mitochondrion, plastid	14.21	21.98
AT1G12700.2	Thale cress	cytosol	16.98	21.84
CDX68679	Canola	cytosol	3.14	21.74
KRH09097	Soybean	plastid	15.72	21.44
Bra027726.1-P	Field mustard	mitochondrion	12.58	21.23
Bra026957.1-P	Field mustard	mitochondrion	15.97	21.06
KRH08599	Soybean	cytosol, plastid	17.48	20.78
Bra026401.1-P	Field mustard	plastid	13.71	20.37
AT1G64100.2	Thale cress	cytosol	20.5	20.22
VIT_14s0030g02260.t01	Wine grape	cytosol	10.94	19.64
KRH09085	Soybean	mitochondrion	16.48	18.61
Bra027656.1-P	Field mustard	cytosol	20.88	17.64
KRH12873	Soybean	cytosol	14.84	16.95
KRH39064	Soybean	cytosol	19.37	15.89
Bra016758.1-P	Field mustard	plastid	19.12	13.11

Protein Annotations

EnsemblPlants:HORVU6Hr1G002890.6	EnsemblPlantsGene:HORVU6Hr1G002890	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535	PFAM:PF13041
PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI000B46CC45	UniProt:A0A287T5U3	MapMan:35.1

Description

No Description!

Coordinates

chrchr6H:-:7031425..7034065

Molecular Weight (calculated)

88412.8 Da

IEP (calculated)

8.272

GRAVY (calculated)

-0.072

Length

795 amino acids

Sequence
(BLAST)

001: RGPSSPAPGR QRTAEVRLVV PSVRAAASWG RSRPRPPPQR RQPDLRCSVG GERRRRPRGL FWPGGAMGRR VVPAGRRILK QSIKDRGHAG DNGRRILEQS
101: IKGRYHAGDI GTEDALHLFD ELLQVAQPSS MHAINCLLTV VGRHCPGLGV SLFNRVARAK LAPSSFTYAI LVHCCCRAGR LDLGFASMGH VIKTGFAKES
201: VVVFSHLLRA VCAEKKTSYA MDIVLRIMPA FDCVPDIFSY TILFKGLCSE KRSQEALELI HMMVEHGGSC RPDVVSYSTV IDGLLKEGLV DKAYSLYCEM
301: LQAGILPNAV TYNSIISAMC KVHAMDKAEE AVHQMSDRGI LPDVVTYTSL IHGYYSLGRC KEVDRIFTEM SRNGVQPNIV TYNIQMDYLC KNGRCAEARK
401: VFDSMVCLGQ KPTVTTYDIL LHGYAMERSF HDMHCLIDLM TENGISPGHY AYNILISEAA KEEMVGEVMH IFTKMRQQGL NPDVVTYGAV INLLSSIGRM
501: DDAMSQFNQM TTEGLAPGII VFNTLISGFC ACGKWDKVHE LFSEMLGRGI YPNTVFFTTI MVRLCKNGRL MEAQDIFDLM VHMGVKPNDT LMHGYFSDGK
601: MDEVRKLLDN MVSVGMEPRV VTYNILIDGY SKNGKIDDAF AVFREMLDRK VKPSVITFNI MIGVFLKCGR KEEAKDLFDG IWANGLVPTV VTYSLMIQNL
701: IEEGSLQEAD DLFLSMEKNG CAADSCLLNA IVRSLLRKGE MRRAGTYLSK FDERSFTLAA STLSLLTAVA SRGEGQEYKG LLPEKYHSFL EKGAD

Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)

001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.