Factsheet for TraesCS6B01G021500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 2
mitochondrion 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	78.63	91.69
TraesCS6A01G015000.1	Wheat	mitochondrion	76.78	70.12
HORVU1Hr1G018190.2	Barley	cytosol	45.65	60.7
Os10t0497432-01	Rice	mitochondrion	34.83	49.62
Os08t0107700-01	Rice	cytosol, mitochondrion	45.38	45.99
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	84.43	44.76
Os08t0248400-01	Rice	mitochondrion	49.08	42.27
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	79.42	42.1
Zm00001d018982_P001	Maize	mitochondrion	38.79	42.0
TraesCS6B01G021600.1	Wheat	mitochondrion	77.04	40.78
Os10t0499500-01	Rice	mitochondrion	51.98	38.93
Os10t0495100-01	Rice	cytosol, mitochondrion	46.7	38.39
HORVU6Hr1G002890.6	Barley	cytosol, plastid	78.89	37.61
TraesCS1B01G315500.1	Wheat	mitochondrion	30.87	36.45
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	39.84	34.87
OQU88594	Sorghum	cytosol	47.23	34.29
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	38.26	33.03
TraesCS6B01G127200.1	Wheat	cytosol	29.55	32.56
Os10t0497366-00	Rice	mitochondrion	33.77	31.92
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	41.42	31.09
TraesCS6B01G127500.1	Wheat	cytosol	40.11	31.02
TraesCS6B01G129100.1	Wheat	cytosol, plastid	23.22	30.56
EER95949	Sorghum	mitochondrion	53.03	30.32
TraesCS1B01G092600.1	Wheat	plastid	38.26	28.05
Os08t0107800-01	Rice	mitochondrion	45.65	27.72
Solyc06g007280.2.1	Tomato	cytosol	17.94	26.67
TraesCS1B01G072300.1	Wheat	plastid	39.84	26.58
TraesCS1B01G073200.1	Wheat	cytosol	20.58	25.74
TraesCS2B01G126900.1	Wheat	cytosol	25.86	25.65
KXG34536	Sorghum	mitochondrion	37.47	24.83
Os10t0495200-01	Rice	mitochondrion	49.6	24.04
Os10t0497300-01	Rice	mitochondrion	49.87	23.8
TraesCS1B01G038200.1	Wheat	mitochondrion	39.05	23.38
Zm00001d009733_P001	Maize	cytosol	48.28	23.02
TraesCS1B01G086000.1	Wheat	plastid	40.37	22.3
Os08t0110200-01	Rice	mitochondrion	43.27	20.55
Os10t0501700-00	Rice	cytosol	24.54	20.48
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	41.42	20.13
TraesCS7B01G469500.1	Wheat	cytosol	29.82	20.11
TraesCS1B01G072700.1	Wheat	cytosol	26.65	19.8
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	34.56	19.73
TraesCS1B01G038500.1	Wheat	mitochondrion	40.37	19.37
TraesCS1B01G085900.1	Wheat	mitochondrion	41.16	19.16
TraesCS1B01G071600.1	Wheat	mitochondrion	42.48	18.99
TraesCS2B01G560700.1	Wheat	plastid	38.52	18.94
TraesCS1B01G072400.1	Wheat	cytosol	34.3	18.7
Zm00001d009735_P001	Maize	cytosol	47.76	18.6
KRH40513	Soybean	plastid	17.15	18.52
TraesCS1B01G039200.1	Wheat	mitochondrion	38.26	18.49
TraesCS1B01G039100.1	Wheat	mitochondrion	37.99	18.39
TraesCS1B01G085300.1	Wheat	mitochondrion	37.99	18.18
TraesCS1B01G092500.1	Wheat	mitochondrion	36.94	17.88
AT1G62914.1	Thale cress	mitochondrion	24.54	17.61
TraesCS1B01G072900.2	Wheat	mitochondrion	39.84	17.3
KRH39050	Soybean	mitochondrion	24.27	17.29
KRH09084	Soybean	plastid	22.43	16.63
VIT_12s0028g02320.t01	Wine grape	mitochondrion	20.58	16.35
AT1G62910.1	Thale cress	mitochondrion	27.18	16.3
Bra036649.1-P	Field mustard	cytosol	16.62	16.11
Solyc06g007740.1.1	Tomato	cytosol	25.07	16.1
AT1G63330.2	Thale cress	cytosol	23.75	16.1
KRH39004	Soybean	cytosol	21.11	16.1
KRH39054	Soybean	cytosol	21.11	16.1
KRH31646	Soybean	cytosol	21.9	16.02
AT1G63400.1	Thale cress	cytosol, plastid	24.27	15.94
AT1G62670.1	Thale cress	mitochondrion	26.39	15.87
KRH41817	Soybean	mitochondrion	23.22	15.86
TraesCS1B01G038400.1	Wheat	cytosol	25.33	15.79
AT1G62930.1	Thale cress	plastid	26.12	15.74
VIT_14s0030g02280.t01	Wine grape	plastid	23.22	15.69
AT1G63130.1	Thale cress	mitochondrion	25.86	15.56
Solyc06g007300.1.1	Tomato	extracellular	24.27	15.54
PGSC0003DMT400056663	Potato	plastid	24.01	15.48
PGSC0003DMT400056665	Potato	mitochondrion	24.01	15.45
PGSC0003DMT400025074	Potato	cytosol	22.43	15.4
KRH39057	Soybean	cytosol	20.05	15.29
Solyc06g005220.2.1	Tomato	cytosol	16.36	15.27
AT1G63150.1	Thale cress	mitochondrion	25.33	15.26
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.32	15.25
AT3G22470.1	Thale cress	cytosol, mitochondrion	24.8	15.19
KRH08636	Soybean	cytosol	20.84	15.13
VIT_14s0081g00120.t01	Wine grape	plastid	23.22	15.09
KRH39074	Soybean	cytosol	19.79	15.09
PGSC0003DMT400008757	Potato	cytosol	19.79	15.06
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.84	15.05
Bra028267.1-P	Field mustard	mitochondrion	24.8	15.02
Bra016762.1-P	Field mustard	mitochondrion	24.01	14.99
KRH09121	Soybean	mitochondrion	21.11	14.98
PGSC0003DMT400053185	Potato	mitochondrion	23.22	14.92
KRH08639	Soybean	mitochondrion, plastid	22.16	14.87
KRH17148	Soybean	mitochondrion	21.37	14.86
AT1G62590.1	Thale cress	mitochondrion	24.8	14.83
TraesCS1B01G085400.1	Wheat	cytosol	25.07	14.82
PGSC0003DMT400053556	Potato	mitochondrion	17.94	14.81
AT1G06580.1	Thale cress	mitochondrion	19.53	14.8
AT1G63070.1	Thale cress	mitochondrion	22.96	14.75
AT5G16640.1	Thale cress	mitochondrion	19.53	14.68
KRH08628	Soybean	plastid	21.37	14.67
AT1G12620.1	Thale cress	cytosol, mitochondrion	24.01	14.65
KRH08607	Soybean	cytosol	21.64	14.62
KRH39066	Soybean	cytosol	21.37	14.59
Bra036651.1-P	Field mustard	mitochondrion	20.58	14.58
KRH39072	Soybean	cytosol	19.0	14.52
AT1G63080.3	Thale cress	mitochondrion	23.48	14.5
KRH39112	Soybean	cytosol	19.0	14.49
VIT_14s0081g00270.t01	Wine grape	plastid	22.16	14.48
Bra026971.1-P	Field mustard	mitochondrion	24.01	14.47
KRH08671	Soybean	cytosol, mitochondrion	21.11	14.47
KRH08277	Soybean	plastid	21.64	14.46
AT1G12300.1	Thale cress	mitochondrion	24.27	14.44
PGSC0003DMT400025087	Potato	endoplasmic reticulum	18.73	14.34
PGSC0003DMT400008760	Potato	mitochondrion	22.16	14.33
KRH40400	Soybean	plastid	21.64	14.21
KRH09154	Soybean	mitochondrion	20.84	14.21
Bra026954.1-P	Field mustard	mitochondrion	24.27	14.15
KRH48615	Soybean	mitochondrion	20.32	14.13
AT4G26800.2	Thale cress	mitochondrion, plastid	19.0	14.01
PGSC0003DMT400052971	Potato	mitochondrion	21.9	14.0
TraesCS1B01G039700.1	Wheat	cytosol	22.43	13.98
Bra027026.1-P	Field mustard	mitochondrion	19.26	13.96
PGSC0003DMT400015293	Potato	mitochondrion	22.43	13.93
PGSC0003DMT400015298	Potato	mitochondrion	22.43	13.93
AT1G62720.1	Thale cress	mitochondrion	17.68	13.81
AT1G64580.1	Thale cress	mitochondrion	19.0	13.77
Solyc04g080120.1.1	Tomato	extracellular	22.16	13.73
KRH08625	Soybean	plastid	20.84	13.72
AT1G12775.1	Thale cress	cytosol, mitochondrion	23.22	13.66
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.53	13.63
TraesCS1B01G073100.1	Wheat	cytosol	21.64	13.53
KRH25652	Soybean	cytosol, golgi	19.26	13.52
KRH09095	Soybean	plastid	20.84	13.5
Bra026958.1-P	Field mustard	mitochondrion	22.69	13.5
Bra026882.1-P	Field mustard	cytosol	19.0	13.48
VIT_14s0081g00280.t01	Wine grape	mitochondrion	22.69	13.46
PGSC0003DMT400025067	Potato	cytosol	16.89	13.45
TraesCS1B01G075300.1	Wheat	cytosol	20.84	13.23
Bra021192.1-P	Field mustard	plastid	17.41	13.1
KRH09097	Soybean	plastid	20.05	13.04
VIT_14s0081g00110.t01	Wine grape	cytosol	16.89	13.03
PGSC0003DMT400053182	Potato	cytosol	20.58	13.02
Bra026884.1-P	Field mustard	cytosol	15.57	12.85
AT3G16710.1	Thale cress	mitochondrion	17.15	12.82
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.09	12.79
AT1G62680.2	Thale cress	plastid	18.47	12.77
AT1G64583.1	Thale cress	mitochondrion	17.15	12.7
AT1G12700.2	Thale cress	cytosol	20.58	12.62
TraesCS2B01G559900.1	Wheat	cytosol	17.94	12.55
Bra031731.1-P	Field mustard	mitochondrion	16.62	12.4
PGSC0003DMT400052977	Potato	cytosol	12.66	12.34
KRH09082	Soybean	cytosol	13.19	12.25
Bra026957.1-P	Field mustard	mitochondrion	19.26	12.11
Bra026401.1-P	Field mustard	plastid	16.89	11.96
KRH08599	Soybean	cytosol, plastid	21.11	11.96
TraesCS2B01G560300.1	Wheat	cytosol	17.94	11.95
AT5G41170.1	Thale cress	mitochondrion	16.09	11.57
Bra027726.1-P	Field mustard	mitochondrion	13.72	11.04
AT1G64100.2	Thale cress	cytosol	23.22	10.92
Bra027636.1-P	Field mustard	cytosol	9.23	10.8
KRH09085	Soybean	mitochondrion	20.05	10.8
Bra027029.1-P	Field mustard	mitochondrion	6.86	10.7
TraesCS1B01G038300.1	Wheat	plastid	15.3	10.62
TraesCS6B01G114300.1	Wheat	cytosol	10.82	10.54
KRH12873	Soybean	cytosol	18.21	9.91
Bra026836.1-P	Field mustard	cytosol, mitochondrion	12.66	9.78
Bra027656.1-P	Field mustard	cytosol	23.75	9.56
OQU88581	Sorghum	cytosol	27.18	9.48
KRH39064	Soybean	cytosol	22.16	8.67
Bra016758.1-P	Field mustard	plastid	24.01	7.85
Bra006187.1-P	Field mustard	plastid	5.8	7.56
PGSC0003DMT400008759	Potato	cytosol	5.54	6.58
VIT_14s0030g02260.t01	Wine grape	cytosol	6.33	5.42
TraesCS1B01G084800.1	Wheat	cytosol	4.75	3.88
Solyc06g007810.1.1	Tomato	cytosol	1.32	1.87
TraesCS1B01G038600.1	Wheat	cytosol	0.79	0.83
TraesCS6B01G341800.2	Wheat	cytosol	0.79	0.75
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS6B01G021500.1	EnsemblPlantsGene:TraesCS6B01G021500	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF302
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr6B:-:13438863..13441784

Molecular Weight (calculated)

42456.0 Da

IEP (calculated)

8.280

GRAVY (calculated)

-0.026

Length

379 amino acids

Sequence
(BLAST)

001: MRRRLVPVGR RILEQKIQDR HRAGDIGRRI LDQSIKDRYH AGGIGTEDAL NLFDELIQVA GPSSVRAINC LLTVVGSDCP ALGVSLFNRV ARAKVPPHNI
101: TYGILVDCCC RAGRLDLGHA AMGHVIKLGF TAEAIVNFSH LLKAICAEKK TSYAMDIVLR IMPMFNCMPN VFSYSILFKG LCNEKRSQEV LELIHMMVEH
201: GGSCQPNVVS YTTVVDGLLK EGEVDKAYSL FSEMLRQGVS PNIVTCNSII SGMCKLHAMD KAEEVLQQML DRRILPDVTT YTSLIHGYYS LGQCEEVDRV
301: FKEMSRNGVQ PNIITYSIQM DYLCKNGRCT EARKIFDSMV SLGQKPDVTT YSILLHGYAM ERSFHDIHCL IGRKWSVTK

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.