Factsheet for TraesCS2B01G126900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G038200.1	Wheat	mitochondrion	82.72	49.92
TraesCS1B01G038400.1	Wheat	cytosol	78.01	49.01
TraesCS1B01G039700.1	Wheat	cytosol	76.96	48.36
TraesCS6B01G127200.1	Wheat	cytosol	42.93	47.67
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	82.98	45.35
TraesCS1B01G072700.1	Wheat	cytosol	57.33	42.94
TraesCS1B01G315500.1	Wheat	mitochondrion	34.29	40.81
TraesCS1B01G038500.1	Wheat	mitochondrion	83.25	40.25
TraesCS1B01G039100.1	Wheat	mitochondrion	81.68	39.85
HORVU1Hr1G004750.6	Barley	plastid	82.98	39.72
TraesCS1B01G039200.1	Wheat	mitochondrion	81.15	39.54
TraesCS7B01G469500.1	Wheat	cytosol	58.12	39.5
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	50.52	38.22
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	64.92	37.35
TraesCS1B01G075300.1	Wheat	cytosol	57.85	37.02
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	42.41	36.9
TraesCS1B01G092600.1	Wheat	plastid	48.69	35.98
TraesCS6B01G127500.1	Wheat	cytosol	46.07	35.92
TraesCS1B01G072300.1	Wheat	plastid	51.83	34.86
TraesCS1B01G085400.1	Wheat	cytosol	58.38	34.79
TraesCS1B01G086000.1	Wheat	plastid	62.3	34.69
TraesCS1B01G073100.1	Wheat	cytosol	54.71	34.49
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	39.01	34.41
TraesCS1B01G072400.1	Wheat	cytosol	62.57	34.39
TraesCS2B01G560300.1	Wheat	cytosol	48.43	32.51
TraesCS2B01G559900.1	Wheat	cytosol	44.5	31.37
Solyc06g007280.2.1	Tomato	cytosol	20.68	30.98
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	62.83	30.77
KXG35774	Sorghum	cytosol, mitochondrion	37.96	30.66
TraesCS1B01G085300.1	Wheat	mitochondrion	63.35	30.56
TraesCS1B01G073200.1	Wheat	cytosol	23.82	30.03
Zm00001d007534_P001	Maize	plastid	60.99	29.99
TraesCS1B01G085900.1	Wheat	mitochondrion	63.09	29.61
Os04t0349600-01	Rice	plastid	29.84	29.46
Zm00001d007531_P001	Maize	plastid	61.78	28.99
TraesCS1B01G092500.1	Wheat	mitochondrion	59.42	28.99
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	57.85	28.85
TraesCS1B01G071600.1	Wheat	mitochondrion	63.87	28.77
Zm00001d007548_P001	Maize	plastid	61.26	28.75
Zm00001d007559_P001	Maize	plastid	61.26	28.64
Zm00001d007555_P001	Maize	plastid	60.99	28.62
TraesCS6B01G114300.1	Wheat	cytosol	28.8	28.28
TraesCS2B01G560700.1	Wheat	plastid	57.07	28.27
TraesCS1B01G084800.1	Wheat	cytosol	34.03	28.02
KXG28799	Sorghum	plastid	53.66	26.97
Bra027636.1-P	Field mustard	cytosol	22.77	26.85
TraesCS6B01G021600.1	Wheat	mitochondrion	49.74	26.54
VIT_12s0028g02320.t01	Wine grape	mitochondrion	32.98	26.42
Bra027029.1-P	Field mustard	mitochondrion	16.75	26.34
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	22.25	26.15
TraesCS1B01G072900.2	Wheat	mitochondrion	59.69	26.12
TraesCS1B01G038600.1	Wheat	cytosol	24.61	25.9
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	48.43	25.87
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	48.43	25.87
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	25.65	25.86
Solyc06g005220.2.1	Tomato	cytosol	26.44	24.88
Os04t0351333-00	Rice	cytosol	54.45	23.66
KRH40513	Soybean	plastid	21.73	23.65
KRH39057	Soybean	cytosol	30.63	23.54
PGSC0003DMT400052977	Potato	cytosol	23.82	23.39
KRH39054	Soybean	cytosol	30.37	23.34
Bra036649.1-P	Field mustard	cytosol	23.82	23.27
KRH39072	Soybean	cytosol	29.84	22.98
KRH39004	Soybean	cytosol	29.84	22.94
KRH39074	Soybean	cytosol	29.84	22.94
VIT_14s0081g00110.t01	Wine grape	cytosol	29.32	22.81
Bra006187.1-P	Field mustard	plastid	17.02	22.34
KRH39112	Soybean	cytosol	29.06	22.33
TraesCS6B01G341800.2	Wheat	cytosol	23.3	22.31
AT5G16640.1	Thale cress	mitochondrion	29.32	22.22
Bra026884.1-P	Field mustard	cytosol	26.18	21.79
KRH09082	Soybean	cytosol	23.04	21.57
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	27.75	20.99
KRH39050	Soybean	mitochondrion	29.06	20.86
PGSC0003DMT400025067	Potato	cytosol	25.92	20.8
Bra026882.1-P	Field mustard	cytosol	29.06	20.79
PGSC0003DMT400008759	Potato	cytosol	17.28	20.69
AT1G62914.1	Thale cress	mitochondrion	28.53	20.64
TraesCS1B01G038300.1	Wheat	plastid	29.32	20.51
KRH41817	Soybean	mitochondrion	29.58	20.36
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	27.75	20.19
KRH39066	Soybean	cytosol	29.32	20.18
KRH08636	Soybean	cytosol	27.49	20.11
KRH08277	Soybean	plastid	29.58	19.93
KRH08628	Soybean	plastid	28.8	19.93
PGSC0003DMT400008757	Potato	cytosol	25.92	19.88
PGSC0003DMT400053556	Potato	mitochondrion	23.82	19.83
KRH48615	Soybean	mitochondrion	28.27	19.82
PGSC0003DMT400025087	Potato	endoplasmic reticulum	25.65	19.8
KRH08671	Soybean	cytosol, mitochondrion	28.53	19.71
AT1G64580.1	Thale cress	mitochondrion	26.96	19.69
KRH08639	Soybean	mitochondrion, plastid	29.06	19.65
KRH25652	Soybean	cytosol, golgi	27.75	19.63
AT1G06580.1	Thale cress	mitochondrion	25.65	19.6
KRH09084	Soybean	plastid	26.18	19.57
AT1G64583.1	Thale cress	mitochondrion	26.18	19.53
AT3G16710.1	Thale cress	mitochondrion	25.92	19.53
Bra021192.1-P	Field mustard	plastid	25.65	19.44
AT1G62720.1	Thale cress	mitochondrion	24.61	19.38
Bra025516.1-P	Field mustard	cytosol, mitochondrion	24.08	19.29
KRH17148	Soybean	mitochondrion	27.49	19.27
KRH08607	Soybean	cytosol	28.27	19.25
VIT_14s0030g02280.t01	Wine grape	plastid	28.27	19.25
AT1G63400.1	Thale cress	cytosol, plastid	29.06	19.24
VIT_14s0081g00270.t01	Wine grape	plastid	29.06	19.14
KRH09121	Soybean	mitochondrion	26.7	19.1
VIT_14s0081g00120.t01	Wine grape	plastid	29.06	19.04
KRH08625	Soybean	plastid	28.53	18.92
Bra036651.1-P	Field mustard	mitochondrion	26.44	18.88
AT1G63330.2	Thale cress	cytosol	27.49	18.78
KRH31646	Soybean	cytosol	25.39	18.73
VIT_14s0081g00280.t01	Wine grape	mitochondrion	31.15	18.62
KRH40400	Soybean	plastid	28.01	18.54
Bra031731.1-P	Field mustard	mitochondrion	24.61	18.5
PGSC0003DMT400025074	Potato	cytosol	26.7	18.48
Solyc06g007300.1.1	Tomato	extracellular	28.53	18.41
KRH09154	Soybean	mitochondrion	26.7	18.35
PGSC0003DMT400056665	Potato	mitochondrion	28.27	18.34
Solyc06g007740.1.1	Tomato	cytosol	28.27	18.31
AT1G63080.3	Thale cress	mitochondrion	29.32	18.24
AT5G41170.1	Thale cress	mitochondrion	25.13	18.22
AT1G12620.1	Thale cress	cytosol, mitochondrion	29.58	18.2
PGSC0003DMT400053185	Potato	mitochondrion	28.01	18.14
AT3G22470.1	Thale cress	cytosol, mitochondrion	29.06	17.93
Solyc06g007810.1.1	Tomato	cytosol	12.57	17.91
AT1G12300.1	Thale cress	mitochondrion	29.58	17.74
PGSC0003DMT400052971	Potato	mitochondrion	27.49	17.71
Bra027026.1-P	Field mustard	mitochondrion	24.08	17.59
Bra027658.1-P	Field mustard	cytosol, mitochondrion	24.87	17.5
Bra026958.1-P	Field mustard	mitochondrion	29.06	17.43
PGSC0003DMT400008760	Potato	mitochondrion	26.7	17.41
PGSC0003DMT400056663	Potato	plastid	26.7	17.35
AT4G26800.2	Thale cress	mitochondrion, plastid	23.3	17.32
Bra026957.1-P	Field mustard	mitochondrion	27.23	17.25
Bra027726.1-P	Field mustard	mitochondrion	21.2	17.2
Bra026971.1-P	Field mustard	mitochondrion	28.27	17.17
AT1G62680.2	Thale cress	plastid	24.61	17.15
AT1G12700.2	Thale cress	cytosol	27.75	17.15
AT1G63130.1	Thale cress	mitochondrion	28.27	17.14
AT1G62670.1	Thale cress	mitochondrion	28.01	16.98
Bra028267.1-P	Field mustard	mitochondrion	27.75	16.93
AT1G62910.1	Thale cress	mitochondrion	28.01	16.93
AT1G62930.1	Thale cress	plastid	27.75	16.85
Bra026401.1-P	Field mustard	plastid	23.56	16.82
KRH09097	Soybean	plastid	25.65	16.81
AT1G12775.1	Thale cress	cytosol, mitochondrion	28.27	16.77
AT1G62590.1	Thale cress	mitochondrion	27.49	16.56
Solyc04g080120.1.1	Tomato	extracellular	26.44	16.5
Bra016762.1-P	Field mustard	mitochondrion	26.18	16.47
KRH09095	Soybean	plastid	25.13	16.41
PGSC0003DMT400015293	Potato	mitochondrion	26.18	16.39
PGSC0003DMT400015298	Potato	mitochondrion	26.18	16.39
PGSC0003DMT400053182	Potato	cytosol	25.65	16.36
Bra026954.1-P	Field mustard	mitochondrion	27.75	16.31
KRH08599	Soybean	cytosol, plastid	28.53	16.29
AT1G63150.1	Thale cress	mitochondrion	26.7	16.22
AT1G63070.1	Thale cress	mitochondrion	24.87	16.1
VIT_14s0030g02260.t01	Wine grape	cytosol	18.32	15.8
Bra026836.1-P	Field mustard	cytosol, mitochondrion	19.63	15.27
KRH12873	Soybean	cytosol	25.92	14.22
KRH09085	Soybean	mitochondrion	25.65	13.92
TraesCS6B01G129100.1	Wheat	cytosol, plastid	10.47	13.89
AT1G64100.2	Thale cress	cytosol	28.01	13.28
Bra027656.1-P	Field mustard	cytosol	31.94	12.96
KRH39064	Soybean	cytosol	29.84	11.76
CDX68679	Canola	cytosol	2.88	9.57
Bra016758.1-P	Field mustard	plastid	28.27	9.32

Protein Annotations

EnsemblPlants:TraesCS2B01G126900.1	EnsemblPlantsGene:TraesCS2B01G126900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SignalP:SignalP-noTM	SUPFAM:SSF48452
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:95095104..95097440

Molecular Weight (calculated)

42918.5 Da

IEP (calculated)

7.302

GRAVY (calculated)

0.035

Length

382 amino acids

Sequence
(BLAST)

001: MDCCCRARRL DLVIAFFGRL LKTGLEADVV AYNTVIHGFF KEGQVGKACN LFHEMAQQGV MPDVVTYSSV IDALCKARAM DKAEYFLRQM VDDGVVPNNV
101: TYNSLIHGYS SSGHWKEAVR VFKEMTSRRV TPDVHTYNMF MTFLCKHGRS KEAAGIFETM AMKGLKPNNV SYAILLHGYA TEGCLVDMIN LFNSMTRDGI
201: RPNCHTLNIL INAYAKSGMM DEAMLIFKGM RKQGVSPDVV TYSTVIHAFC KMGSLDIAMD KFNQMVDMGV RPNAVVYHSL IQSFCTHGDF VKAKELVTEM
301: RNKGMRPPDI NFFHSIMQNL CTEGRVTEAR DILDLIVHIG MRPDVLIFSL LIDGYCLVSK MEDASKIFDD MVSYGLEPSN IT

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.