Factsheet for TraesCS6B01G129200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G089500.1	Wheat	cytosol, mitochondrion, plastid	87.13	91.48
TraesCS6B01G127500.1	Wheat	cytosol	64.95	66.94
TraesCS6B01G127200.1	Wheat	cytosol	44.95	65.99
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	56.24	65.59
TraesCS6B01G129100.1	Wheat	cytosol, plastid	32.28	56.6
TraesCS2B01G126900.1	Wheat	cytosol	38.22	50.52
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	42.97	49.43
TraesCS1B01G315500.1	Wheat	mitochondrion	31.29	49.22
TraesCS1B01G072300.1	Wheat	plastid	50.3	44.72
TraesCS1B01G092600.1	Wheat	plastid	45.74	44.68
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	28.12	43.69
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	31.09	41.42
TraesCS1B01G038200.1	Wheat	mitochondrion	49.31	39.34
TraesCS1B01G072700.1	Wheat	cytosol	36.83	36.47
TraesCS1B01G086000.1	Wheat	plastid	49.11	36.15
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	54.06	35.0
TraesCS1B01G073200.1	Wheat	cytosol	20.79	34.65
KXG28799	Sorghum	plastid	51.68	34.34
TraesCS7B01G469500.1	Wheat	cytosol	37.23	33.45
Solyc06g007280.2.1	Tomato	cytosol	16.83	33.33
TraesCS1B01G085900.1	Wheat	mitochondrion	53.07	32.92
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	42.97	32.68
TraesCS1B01G038500.1	Wheat	mitochondrion	50.49	32.28
TraesCS1B01G071600.1	Wheat	mitochondrion	54.06	32.19
TraesCS1B01G039200.1	Wheat	mitochondrion	49.31	31.76
TraesCS1B01G085300.1	Wheat	mitochondrion	49.7	31.69
Zm00001d007548_P001	Maize	plastid	50.89	31.57
Zm00001d007559_P001	Maize	plastid	50.89	31.46
Zm00001d007531_P001	Maize	plastid	50.69	31.45
TraesCS1B01G092500.1	Wheat	mitochondrion	48.71	31.42
TraesCS2B01G560700.1	Wheat	plastid	47.92	31.39
TraesCS1B01G072400.1	Wheat	cytosol	43.17	31.37
Zm00001d007555_P001	Maize	plastid	50.49	31.33
TraesCS1B01G039100.1	Wheat	mitochondrion	48.32	31.16
Zm00001d007534_P001	Maize	plastid	47.72	31.02
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	41.39	29.23
TraesCS1B01G072900.2	Wheat	mitochondrion	50.3	29.1
TraesCS6B01G021600.1	Wheat	mitochondrion	41.19	29.05
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	40.79	28.81
TraesCS1B01G039700.1	Wheat	cytosol	34.46	28.62
TraesCS1B01G038400.1	Wheat	cytosol	33.47	27.8
TraesCS1B01G075300.1	Wheat	cytosol	32.28	27.3
TraesCS1B01G085400.1	Wheat	cytosol	33.86	26.68
KRH40513	Soybean	plastid	18.02	25.93
TraesCS1B01G073100.1	Wheat	cytosol	30.89	25.74
Bra036649.1-P	Field mustard	cytosol	19.8	25.58
VIT_12s0028g02320.t01	Wine grape	mitochondrion	23.76	25.16
TraesCS2B01G559900.1	Wheat	cytosol	26.93	25.09
KRH39050	Soybean	mitochondrion	25.74	24.44
KRH39004	Soybean	cytosol	23.96	24.35
KRH39054	Soybean	cytosol	23.76	24.14
KRH39057	Soybean	cytosol	23.76	24.14
KRH39074	Soybean	cytosol	23.56	23.94
TraesCS2B01G560300.1	Wheat	cytosol	26.93	23.9
KRH39072	Soybean	cytosol	23.37	23.79
AT5G16640.1	Thale cress	mitochondrion	23.56	23.61
KRH09084	Soybean	plastid	23.76	23.48
KRH39112	Soybean	cytosol	22.77	23.14
AT1G62914.1	Thale cress	mitochondrion	24.16	23.11
Bra027029.1-P	Field mustard	mitochondrion	10.89	22.63
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	22.57	22.57
Bra027636.1-P	Field mustard	cytosol	14.46	22.53
KRH39066	Soybean	cytosol	24.75	22.52
Bra021192.1-P	Field mustard	plastid	22.38	22.42
KRH08636	Soybean	cytosol	23.17	22.41
KRH48615	Soybean	mitochondrion	23.96	22.2
AT1G63330.2	Thale cress	cytosol	24.55	22.18
Solyc06g005220.2.1	Tomato	cytosol	17.82	22.17
AT1G63400.1	Thale cress	cytosol, plastid	25.15	22.01
VIT_14s0081g00110.t01	Wine grape	cytosol	21.39	22.0
KRH41817	Soybean	mitochondrion	24.16	21.98
VIT_14s0030g02280.t01	Wine grape	plastid	24.36	21.93
KRH17148	Soybean	mitochondrion	23.56	21.83
AT1G62670.1	Thale cress	mitochondrion	27.13	21.75
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	22.57	21.71
PGSC0003DMT400008757	Potato	cytosol	21.39	21.69
Bra026971.1-P	Field mustard	mitochondrion	26.93	21.62
KRH08639	Soybean	mitochondrion, plastid	24.16	21.59
KRH08607	Soybean	cytosol	23.96	21.57
KRH08628	Soybean	plastid	23.56	21.56
Bra026882.1-P	Field mustard	cytosol	22.77	21.54
KRH08671	Soybean	cytosol, mitochondrion	23.56	21.52
AT1G63080.3	Thale cress	mitochondrion	26.14	21.5
AT1G62720.1	Thale cress	mitochondrion	20.59	21.44
PGSC0003DMT400025087	Potato	endoplasmic reticulum	20.99	21.41
Bra026958.1-P	Field mustard	mitochondrion	26.93	21.35
KRH09121	Soybean	mitochondrion	22.57	21.35
KRH08277	Soybean	plastid	23.96	21.34
PGSC0003DMT400056665	Potato	mitochondrion	24.75	21.22
KRH08625	Soybean	plastid	24.16	21.18
Bra026884.1-P	Field mustard	cytosol	19.21	21.13
PGSC0003DMT400053556	Potato	mitochondrion	19.21	21.13
AT1G12300.1	Thale cress	mitochondrion	26.53	21.04
AT1G06580.1	Thale cress	mitochondrion	20.79	21.0
KRH40400	Soybean	plastid	23.96	20.97
Bra006187.1-P	Field mustard	plastid	12.08	20.96
Bra028267.1-P	Field mustard	mitochondrion	25.94	20.93
VIT_14s0081g00120.t01	Wine grape	plastid	24.16	20.93
VIT_14s0081g00270.t01	Wine grape	plastid	23.96	20.86
KRH31646	Soybean	cytosol	21.39	20.85
Bra016762.1-P	Field mustard	mitochondrion	24.95	20.76
AT3G16710.1	Thale cress	mitochondrion	20.79	20.71
KRH09154	Soybean	mitochondrion	22.77	20.68
AT1G64580.1	Thale cress	mitochondrion	21.39	20.65
AT1G12620.1	Thale cress	cytosol, mitochondrion	25.35	20.61
Solyc06g007300.1.1	Tomato	extracellular	24.16	20.61
KRH25652	Soybean	cytosol, golgi	21.98	20.56
AT1G62590.1	Thale cress	mitochondrion	25.54	20.35
AT1G12775.1	Thale cress	cytosol, mitochondrion	25.94	20.34
AT1G63070.1	Thale cress	mitochondrion	23.76	20.34
AT1G63130.1	Thale cress	mitochondrion	25.35	20.32
PGSC0003DMT400052977	Potato	cytosol	15.64	20.31
AT5G41170.1	Thale cress	mitochondrion	21.19	20.3
AT3G22470.1	Thale cress	cytosol, mitochondrion	24.75	20.19
Solyc06g007740.1.1	Tomato	cytosol	23.56	20.17
PGSC0003DMT400025067	Potato	cytosol	19.01	20.17
Bra027026.1-P	Field mustard	mitochondrion	20.79	20.08
Bra026957.1-P	Field mustard	mitochondrion	23.96	20.07
Bra026954.1-P	Field mustard	mitochondrion	25.74	20.0
PGSC0003DMT400053185	Potato	mitochondrion	23.37	20.0
AT1G64583.1	Thale cress	mitochondrion	20.2	19.92
Bra025516.1-P	Field mustard	cytosol, mitochondrion	18.81	19.92
PGSC0003DMT400056663	Potato	plastid	23.17	19.9
KRH09097	Soybean	plastid	22.97	19.9
KXG35774	Sorghum	cytosol, mitochondrion	18.61	19.87
AT1G62930.1	Thale cress	plastid	24.75	19.87
AT4G26800.2	Thale cress	mitochondrion, plastid	20.2	19.84
TraesCS1B01G038300.1	Wheat	plastid	21.39	19.78
Bra036651.1-P	Field mustard	mitochondrion	20.79	19.63
KRH09082	Soybean	cytosol	15.84	19.61
AT1G12700.2	Thale cress	cytosol	23.96	19.58
PGSC0003DMT400025074	Potato	cytosol	21.39	19.57
KRH09095	Soybean	plastid	22.57	19.49
AT1G62910.1	Thale cress	mitochondrion	24.36	19.46
VIT_14s0081g00280.t01	Wine grape	mitochondrion	24.55	19.41
AT1G63150.1	Thale cress	mitochondrion	24.16	19.4
PGSC0003DMT400052971	Potato	mitochondrion	22.77	19.39
PGSC0003DMT400008760	Potato	mitochondrion	22.38	19.28
Bra026401.1-P	Field mustard	plastid	20.2	19.07
TraesCS6B01G114300.1	Wheat	cytosol	14.65	19.02
Bra031731.1-P	Field mustard	mitochondrion	18.61	18.5
Solyc04g080120.1.1	Tomato	extracellular	21.98	18.14
Bra026836.1-P	Field mustard	cytosol, mitochondrion	17.62	18.13
AT1G62680.2	Thale cress	plastid	19.6	18.07
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.41	18.05
PGSC0003DMT400053182	Potato	cytosol	21.39	18.03
PGSC0003DMT400015293	Potato	mitochondrion	21.58	17.87
PGSC0003DMT400015298	Potato	mitochondrion	21.58	17.87
PGSC0003DMT400008759	Potato	cytosol	11.29	17.87
KRH08599	Soybean	cytosol, plastid	23.37	17.64
Bra027726.1-P	Field mustard	mitochondrion	15.45	16.56
TraesCS1B01G084800.1	Wheat	cytosol	15.05	16.38
KRH09085	Soybean	mitochondrion	22.18	15.91
AT1G64100.2	Thale cress	cytosol	24.95	15.63
Bra027656.1-P	Field mustard	cytosol	26.14	14.03
Solyc06g007810.1.1	Tomato	cytosol	7.33	13.81
KRH12873	Soybean	cytosol	18.61	13.51
KRH39064	Soybean	cytosol	24.75	12.9
VIT_14s0030g02260.t01	Wine grape	cytosol	11.29	12.87
TraesCS6B01G341800.2	Wheat	cytosol	8.51	10.78
Bra016758.1-P	Field mustard	plastid	24.55	10.7
TraesCS1B01G038600.1	Wheat	cytosol	5.15	7.16
CDX68679	Canola	cytosol	0.2	0.87

Protein Annotations

EnsemblPlants:TraesCS6B01G129200.1	EnsemblPlantsGene:TraesCS6B01G129200	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1	:

Description

No Description!

Coordinates

chr6B:+:125404938..125406455

Molecular Weight (calculated)

56201.2 Da

IEP (calculated)

8.431

GRAVY (calculated)

0.004

Length

505 amino acids

Sequence
(BLAST)

001: MPCVRPGSSS STVSARANQQ LLNKLKDHLD SGTLQPERAH QLFDKLLRQT VPVSACALNG LFASLARALP SAACTDGPAL AIALFNRMAR EGHQVITPNI
101: FTYSILIDCC CRSRRPELGP AFFGRLLKTG LMANVVTFTS LFKCLCDMKR MDEAVGVLLH RMPGDMPDVI SYSTILKGFC NEGRSQLALN LLQMMVKKGA
201: GHSPNVVSYN MVIDGFFKEG EVSKACNLFH EMKQRGVVPD VWTYNSIIDA MCKARAMDKA KLVLRQMVDS GVQPDIVTYN KLIHGYSISG QFEEVVRLLD
301: KMRSQGVKPT VFTCNTVMDY LCKHGRIKEA AEFFYSMVEK GHKPNIVSYA IMFRGYAKEG SLVEMTDLCE LMARDGIVPD LHCFNILINA YAKCGMMDVA
401: ILFFKDMLKQ GVNPDEVTYL AVIAGYCRVG MMDDAMENFN EMIGMGVPHN ATVYRCMIQG YLNHGDFLKA RELITEMKTK GIHPRPRKSQ GIDPGYLMTQ
501: LFTGA

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.