Factsheet for TraesCS1B01G085900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G067400.1	Wheat	mitochondrion	94.23	92.97
TraesCS1D01G068400.1	Wheat	mitochondrion	91.15	90.16
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	88.21	86.51
TraesCS6B01G341800.2	Wheat	cytosol	36.0	73.43
TraesCS1B01G086000.1	Wheat	plastid	60.07	71.28
TraesCS1B01G085400.1	Wheat	cytosol	55.04	69.89
TraesCS1B01G092500.1	Wheat	mitochondrion	67.2	69.86
TraesCS1B01G075300.1	Wheat	cytosol	51.11	69.68
TraesCS1B01G072400.1	Wheat	cytosol	59.34	69.5
TraesCS1B01G085300.1	Wheat	mitochondrion	67.32	69.19
TraesCS1B01G084800.1	Wheat	cytosol	38.94	68.32
TraesCS1B01G073100.1	Wheat	cytosol	50.86	68.32
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	55.04	67.47
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	64.25	67.05
TraesCS1B01G071600.1	Wheat	mitochondrion	67.32	64.62
TraesCS1B01G072900.2	Wheat	mitochondrion	69.29	64.6
TraesCS1B01G092600.1	Wheat	plastid	40.42	63.64
TraesCS1B01G073200.1	Wheat	cytosol	23.59	63.37
TraesCS1B01G072700.1	Wheat	cytosol	39.68	63.33
TraesCS2B01G126900.1	Wheat	cytosol	29.61	63.09
TraesCS1B01G038400.1	Wheat	cytosol	46.19	61.84
TraesCS1B01G039700.1	Wheat	cytosol	45.95	61.51
TraesCS1B01G072300.1	Wheat	plastid	42.63	61.09
TraesCS1B01G038500.1	Wheat	mitochondrion	58.85	60.63
TraesCS1B01G038600.1	Wheat	cytosol	27.03	60.61
TraesCS1B01G039200.1	Wheat	mitochondrion	58.23	60.46
TraesCS1B01G038300.1	Wheat	plastid	40.42	60.26
TraesCS1B01G039100.1	Wheat	mitochondrion	57.62	59.9
TraesCS1B01G315500.1	Wheat	mitochondrion	22.73	57.63
TraesCS2B01G559900.1	Wheat	cytosol	38.21	57.38
KXG28799	Sorghum	plastid	53.56	57.37
Zm00001d007534_P001	Maize	plastid	54.55	57.14
TraesCS2B01G560700.1	Wheat	plastid	54.05	57.07
TraesCS1B01G038200.1	Wheat	mitochondrion	44.35	57.03
Zm00001d007531_P001	Maize	plastid	56.88	56.88
Zm00001d007559_P001	Maize	plastid	57.0	56.79
Zm00001d007548_P001	Maize	plastid	56.76	56.76
Zm00001d007555_P001	Maize	plastid	56.63	56.63
TraesCS2B01G560300.1	Wheat	cytosol	39.56	56.59
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	29.98	55.58
TraesCS7B01G469500.1	Wheat	cytosol	38.08	55.16
TraesCS6B01G127200.1	Wheat	cytosol	23.1	54.65
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	32.92	53.07
TraesCS6B01G127500.1	Wheat	cytosol	31.94	53.06
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	49.39	52.48
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	27.89	52.42
KXG35774	Sorghum	cytosol, mitochondrion	30.1	51.8
TraesCS6B01G021600.1	Wheat	mitochondrion	41.52	47.21
Os04t0349600-01	Rice	plastid	22.11	46.51
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	40.79	46.43
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	40.54	46.15
Os04t0351333-00	Rice	cytosol	47.79	44.25
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	17.57	44.0
TraesCS6B01G114300.1	Wheat	cytosol	19.9	41.65
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	19.16	41.16
TraesCS6B01G129100.1	Wheat	cytosol, plastid	13.64	38.54
Solyc06g007280.2.1	Tomato	cytosol	11.43	36.47
KRH39112	Soybean	cytosol	19.9	32.6
KRH39054	Soybean	cytosol	19.78	32.39
VIT_14s0081g00110.t01	Wine grape	cytosol	19.53	32.38
KRH39057	Soybean	cytosol	19.53	31.99
KRH39004	Soybean	cytosol	19.41	31.79
KRH39074	Soybean	cytosol	19.41	31.79
VIT_12s0028g02320.t01	Wine grape	mitochondrion	18.55	31.66
PGSC0003DMT400052977	Potato	cytosol	14.99	31.36
KRH39072	Soybean	cytosol	18.92	31.05
KRH09084	Soybean	plastid	19.16	30.53
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.92	30.5
KRH40513	Soybean	plastid	13.14	30.48
VIT_14s0081g00120.t01	Wine grape	plastid	21.74	30.36
Solyc06g005220.2.1	Tomato	cytosol	15.11	30.3
KRH08636	Soybean	cytosol	19.41	30.27
PGSC0003DMT400008759	Potato	cytosol	11.79	30.09
VIT_14s0081g00270.t01	Wine grape	plastid	21.38	30.0
Bra026884.1-P	Field mustard	cytosol	16.83	29.85
KRH48615	Soybean	mitochondrion	19.9	29.72
Bra027636.1-P	Field mustard	cytosol	11.79	29.63
KRH08277	Soybean	plastid	20.64	29.63
Bra026882.1-P	Field mustard	cytosol	19.41	29.59
KRH08639	Soybean	mitochondrion, plastid	20.52	29.56
KRH08628	Soybean	plastid	20.02	29.53
KRH09154	Soybean	mitochondrion	20.15	29.5
Solyc06g007810.1.1	Tomato	cytosol	9.71	29.48
KRH39066	Soybean	cytosol	20.02	29.37
AT1G63330.2	Thale cress	cytosol	20.15	29.34
KRH08671	Soybean	cytosol, mitochondrion	19.9	29.29
Bra006187.1-P	Field mustard	plastid	10.44	29.21
KRH17148	Soybean	mitochondrion	19.53	29.17
KRH39050	Soybean	mitochondrion	18.92	28.95
KRH08607	Soybean	cytosol	19.9	28.88
Solyc06g007740.1.1	Tomato	cytosol	20.88	28.81
AT5G16640.1	Thale cress	mitochondrion	17.81	28.77
PGSC0003DMT400008757	Potato	cytosol	17.57	28.71
KRH08625	Soybean	plastid	20.02	28.3
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.5	28.27
KRH40400	Soybean	plastid	20.02	28.25
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.18	28.19
KRH09121	Soybean	mitochondrion	18.43	28.09
PGSC0003DMT400025074	Potato	cytosol	19.04	28.08
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.99	28.01
PGSC0003DMT400053185	Potato	mitochondrion	20.27	27.97
KRH09082	Soybean	cytosol	14.0	27.94
AT1G63400.1	Thale cress	cytosol, plastid	19.78	27.9
AT1G63150.1	Thale cress	mitochondrion	21.5	27.82
AT1G62670.1	Thale cress	mitochondrion	21.5	27.78
AT1G63130.1	Thale cress	mitochondrion	21.5	27.78
PGSC0003DMT400025067	Potato	cytosol	16.22	27.73
Solyc06g007300.1.1	Tomato	extracellular	20.15	27.7
PGSC0003DMT400056665	Potato	mitochondrion	20.02	27.67
AT1G62930.1	Thale cress	plastid	21.38	27.66
KRH41817	Soybean	mitochondrion	18.8	27.57
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.71	27.47
KRH31646	Soybean	cytosol	17.44	27.41
AT1G62914.1	Thale cress	mitochondrion	17.69	27.27
PGSC0003DMT400056663	Potato	plastid	19.66	27.21
Bra026971.1-P	Field mustard	mitochondrion	21.01	27.19
VIT_14s0030g02280.t01	Wine grape	plastid	18.67	27.09
AT1G63080.3	Thale cress	mitochondrion	20.39	27.04
PGSC0003DMT400052971	Potato	mitochondrion	19.66	26.98
Bra026954.1-P	Field mustard	mitochondrion	21.5	26.92
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.39	26.73
KRH25652	Soybean	cytosol, golgi	17.69	26.67
AT1G62590.1	Thale cress	mitochondrion	20.76	26.66
Solyc04g080120.1.1	Tomato	extracellular	20.02	26.63
PGSC0003DMT400008760	Potato	mitochondrion	19.16	26.62
AT1G62910.1	Thale cress	mitochondrion	20.64	26.58
PGSC0003DMT400053182	Potato	cytosol	19.53	26.54
KRH09095	Soybean	plastid	19.04	26.5
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.97	26.48
AT1G63070.1	Thale cress	mitochondrion	19.16	26.44
AT1G12300.1	Thale cress	mitochondrion	20.64	26.37
Bra026958.1-P	Field mustard	mitochondrion	20.64	26.37
Bra016762.1-P	Field mustard	mitochondrion	19.66	26.36
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.36	26.21
Bra031731.1-P	Field mustard	mitochondrion	16.34	26.18
PGSC0003DMT400053556	Potato	mitochondrion	14.74	26.14
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.64	26.09
Bra036649.1-P	Field mustard	cytosol	12.53	26.09
KRH09097	Soybean	plastid	18.67	26.07
PGSC0003DMT400015293	Potato	mitochondrion	19.53	26.07
PGSC0003DMT400015298	Potato	mitochondrion	19.53	26.07
Bra028267.1-P	Field mustard	mitochondrion	20.02	26.04
Bra021192.1-P	Field mustard	plastid	15.97	25.79
Bra027029.1-P	Field mustard	mitochondrion	7.62	25.51
Bra036651.1-P	Field mustard	mitochondrion	16.71	25.42
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.95	25.41
AT1G12700.2	Thale cress	cytosol	19.29	25.4
AT1G62680.2	Thale cress	plastid	17.08	25.36
Bra026957.1-P	Field mustard	mitochondrion	18.67	25.21
Bra027026.1-P	Field mustard	mitochondrion	16.09	25.05
AT3G16710.1	Thale cress	mitochondrion	15.48	24.85
AT1G62720.1	Thale cress	mitochondrion	14.62	24.54
AT1G64580.1	Thale cress	mitochondrion	15.72	24.47
AT1G64583.1	Thale cress	mitochondrion	15.36	24.41
KRH08599	Soybean	cytosol, plastid	19.66	23.92
AT5G41170.1	Thale cress	mitochondrion	15.48	23.91
VIT_14s0030g02260.t01	Wine grape	cytosol	12.9	23.7
CDX68679	Canola	cytosol	3.32	23.48
AT4G26800.2	Thale cress	mitochondrion, plastid	14.62	23.15
AT1G06580.1	Thale cress	mitochondrion	14.13	23.0
Bra026401.1-P	Field mustard	plastid	15.11	22.99
AT1G64100.2	Thale cress	cytosol	21.87	22.08
KRH09085	Soybean	mitochondrion	18.92	21.88
Bra027726.1-P	Field mustard	mitochondrion	12.29	21.23
Bra027656.1-P	Field mustard	cytosol	23.1	19.98
KRH12873	Soybean	cytosol	15.72	18.39
KRH39064	Soybean	cytosol	21.13	17.75
Bra016758.1-P	Field mustard	plastid	20.39	14.32

Protein Annotations

EnsemblPlants:TraesCS1B01G085900.1	EnsemblPlantsGene:TraesCS1B01G085900	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901
TIGRFAMs:TIGR00756	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:70333572..70338241

Molecular Weight (calculated)

90121.1 Da

IEP (calculated)

9.065

GRAVY (calculated)

-0.058

Length

814 amino acids

Sequence
(BLAST)

001: MSRIRLRRRR RHRLPSSTSR PSPSWSPHAA CAAATERVRA GTLSPQDAHH LFDELLRQAT PVPERSLNGF LAALSRATPS KACRDGPALV LSLFNRVCRE
101: EAGGMRVAPP TIFTYGVLMN CCCRTRRPEL GLAFFGRLLR TGLKADKTIA NTVLKCLCCA KRTDDAVKVL RRRMSELGCV PDAFSYAIVL KGLCDDNRSQ
201: QALDLLRMMA KEGVCSPDVV TYNTVIHGFF KEGKIGKACN LFHEMTKQGF VPNVVTYNSV ISALCKARAM DNAELFLREM VDNGVQPNKV TYTSMIHGYS
301: TLGQWKEATK LFREMTSSGL IPDIVTWNSF IDSLCKHGRS KEAAENFHSM SAKGHKPDII SYATLLHGYA NEGSFPDMMS FFKSMEGDGI VANCQVFNIL
401: IDAYAKRGMM DEAMLIFTEM PGQGVNPNVV TYSTVIASLC RMGRLADAMN KFSEMIGTGV QPNTVVYHSL VQGLCTHGDL VKAKELISEM MNKGIPRPNI
501: AFFSSIVHSL CKEGRVMDAH HIFDLVKDIG ERSDIIMFNT LIDGYCLIGE MGKAVSVLDV MISAGIEPDI FTYNTLVNGY FKSGRIDDGL NLFREMSHKK
601: IKPSTVTYNI ILDGLFRAGR TVAAKKMLHE MIGCGTTVSL STYNIILRGL CRNNCTDEAI AMFQKLRTIN VKFNITTLNT MINSMYTVQR REEAKDLFAA
701: ISDSGLVPNV STYGIMIRNL LKEGSVKEAD NMFLSMEKSG CAPCSRLLND TIRTLLEKGE IVKAGNYMSK VDGKSISLEA STSSLLLSLF SGKGKYREQI
801: QLLPVKYQFF GGVS

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.