Factsheet for TraesCS1B01G038400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G038600.1	Wheat	cytosol	53.78	90.08
TraesCS1B01G039700.1	Wheat	cytosol	82.07	82.07
TraesCS2B01G126900.1	Wheat	cytosol	49.01	78.01
TraesCS1B01G039100.1	Wheat	mitochondrion	91.12	70.75
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	81.25	70.67
TraesCS1B01G039200.1	Wheat	mitochondrion	87.99	68.24
TraesCS1B01G038200.1	Wheat	mitochondrion	68.59	65.88
TraesCS1B01G038500.1	Wheat	mitochondrion	84.7	65.19
HORVU1Hr1G004750.6	Barley	plastid	81.25	61.9
TraesCS1A01G031700.1	Wheat	plastid	74.34	61.0
TraesCS1B01G075300.1	Wheat	cytosol	58.39	59.46
TraesCS6B01G341800.2	Wheat	cytosol	38.16	58.15
TraesCS1B01G073100.1	Wheat	cytosol	57.89	58.09
TraesCS1B01G084800.1	Wheat	cytosol	43.91	57.54
TraesCS1B01G085400.1	Wheat	cytosol	59.87	56.79
TraesCS1B01G038300.1	Wheat	plastid	49.84	55.49
TraesCS2B01G560300.1	Wheat	cytosol	51.32	54.83
TraesCS2B01G559900.1	Wheat	cytosol	48.68	54.61
KXG35774	Sorghum	cytosol, mitochondrion	40.79	52.43
TraesCS1B01G072400.1	Wheat	cytosol	59.87	52.37
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	54.11	49.55
TraesCS1B01G072700.1	Wheat	cytosol	41.12	49.02
TraesCS6B01G127200.1	Wheat	cytosol	26.81	47.38
TraesCS7B01G469500.1	Wheat	cytosol	43.75	47.33
TraesCS1B01G085300.1	Wheat	mitochondrion	60.69	46.59
TraesCS1B01G085900.1	Wheat	mitochondrion	61.84	46.19
Zm00001d007534_P001	Maize	plastid	58.88	46.07
KXG28799	Sorghum	plastid	56.58	45.26
TraesCS1B01G092500.1	Wheat	mitochondrion	57.07	44.32
Zm00001d007548_P001	Maize	plastid	59.21	44.23
Zm00001d007555_P001	Maize	plastid	59.05	44.1
Zm00001d007559_P001	Maize	plastid	59.21	44.06
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	55.26	43.86
Zm00001d007531_P001	Maize	plastid	58.72	43.86
TraesCS2B01G560700.1	Wheat	plastid	54.61	43.06
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	53.62	41.79
TraesCS1B01G072900.2	Wheat	mitochondrion	59.7	41.58
TraesCS1B01G071600.1	Wheat	mitochondrion	57.57	41.27
TraesCS6B01G114300.1	Wheat	cytosol	25.82	40.36
TraesCS1B01G073200.1	Wheat	cytosol	19.57	39.27
Os04t0351333-00	Rice	cytosol	56.58	39.14
TraesCS1B01G086000.1	Wheat	plastid	43.91	38.92
TraesCS6B01G021600.1	Wheat	mitochondrion	45.72	38.83
TraesCS6B01G045200.1	Wheat	cytosol, mitochondrion	44.9	38.18
TraesCS5B01G250800.1	Wheat	cytosol, mitochondrion	44.74	38.04
TraesCS1B01G315500.1	Wheat	mitochondrion	19.41	36.76
TraesCS6B01G127500.1	Wheat	cytosol	26.97	33.47
TraesCS6B01G129200.1	Wheat	cytosol, nucleus, plastid	27.8	33.47
TraesCS1B01G072300.1	Wheat	plastid	31.09	33.27
TraesCS1B01G092600.1	Wheat	plastid	28.29	33.27
TraesCS2B01G560000.1	Wheat	mitochondrion, plastid	23.36	32.35
PGSC0003DMT400052977	Potato	cytosol	19.9	31.11
Solyc06g007280.2.1	Tomato	cytosol	12.99	30.98
Solyc06g005220.2.1	Tomato	cytosol	20.23	30.3
Bra027636.1-P	Field mustard	cytosol	16.12	30.25
VIT_14s0081g00110.t01	Wine grape	cytosol	24.34	30.14
CDX68679	Canola	cytosol	5.59	29.57
Solyc06g007810.1.1	Tomato	cytosol	12.99	29.48
TraesCS6B01G127400.1	Wheat	cytosol, mitochondrion	20.89	29.33
PGSC0003DMT400008759	Potato	cytosol	14.8	28.21
Os04t0349600-01	Rice	plastid	17.27	27.13
Bra026884.1-P	Field mustard	cytosol	20.39	27.02
KRH09082	Soybean	cytosol	18.09	26.96
VIT_12s0028g02320.t01	Wine grape	mitochondrion	21.05	26.83
Bra027029.1-P	Field mustard	mitochondrion	10.69	26.75
KRH39004	Soybean	cytosol	21.71	26.56
KRH39054	Soybean	cytosol	21.71	26.56
KRH39074	Soybean	cytosol	21.38	26.16
KRH39112	Soybean	cytosol	21.38	26.16
Bra006187.1-P	Field mustard	plastid	12.5	26.12
KRH39072	Soybean	cytosol	21.22	26.01
KRH39057	Soybean	cytosol	21.22	25.96
TraesCS6B01G021500.1	Wheat	cytosol, mitochondrion	15.79	25.33
VIT_14s0081g00120.t01	Wine grape	plastid	23.85	24.87
Bra036649.1-P	Field mustard	cytosol	15.95	24.81
PGSC0003DMT400025067	Potato	cytosol	18.91	24.16
PGSC0003DMT400008757	Potato	cytosol	19.74	24.1
TraesCS6B01G021200.1	Wheat	cytosol, mitochondrion	12.83	24.0
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	19.9	23.96
KRH48615	Soybean	mitochondrion	21.38	23.85
PGSC0003DMT400025087	Potato	endoplasmic reticulum	19.41	23.84
AT5G16640.1	Thale cress	mitochondrion	19.74	23.81
KRH39066	Soybean	cytosol	21.71	23.78
VIT_14s0030g02260.t01	Wine grape	cytosol	17.27	23.7
KRH09084	Soybean	plastid	19.9	23.68
KRH40513	Soybean	plastid	13.65	23.65
KRH08636	Soybean	cytosol	20.23	23.56
VIT_14s0081g00270.t01	Wine grape	plastid	22.37	23.45
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	20.07	23.24
KRH31646	Soybean	cytosol	19.57	22.97
KRH08671	Soybean	cytosol, mitochondrion	20.72	22.78
KRH25652	Soybean	cytosol, golgi	20.23	22.78
PGSC0003DMT400025074	Potato	cytosol	20.56	22.64
KRH39050	Soybean	mitochondrion	19.74	22.56
KRH41817	Soybean	mitochondrion	20.56	22.52
KRH08277	Soybean	plastid	20.89	22.4
VIT_14s0081g00280.t01	Wine grape	mitochondrion	23.52	22.38
KRH08639	Soybean	mitochondrion, plastid	20.72	22.3
KRH09121	Soybean	mitochondrion	19.57	22.28
Bra027658.1-P	Field mustard	cytosol, mitochondrion	19.9	22.28
KRH08607	Soybean	cytosol	20.56	22.28
PGSC0003DMT400056665	Potato	mitochondrion	21.55	22.24
KRH08628	Soybean	plastid	20.07	22.1
KRH17148	Soybean	mitochondrion	19.74	22.02
Solyc06g007300.1.1	Tomato	extracellular	21.38	21.96
Bra026882.1-P	Field mustard	cytosol	19.24	21.91
Solyc06g007740.1.1	Tomato	cytosol	21.22	21.86
KRH40400	Soybean	plastid	20.72	21.84
KRH09154	Soybean	mitochondrion	19.9	21.76
AT1G63330.2	Thale cress	cytosol	19.9	21.65
PGSC0003DMT400052971	Potato	mitochondrion	21.05	21.59
KRH08625	Soybean	plastid	20.39	21.53
PGSC0003DMT400056663	Potato	plastid	20.56	21.26
PGSC0003DMT400053185	Potato	mitochondrion	20.56	21.19
PGSC0003DMT400008760	Potato	mitochondrion	20.39	21.16
Bra031731.1-P	Field mustard	mitochondrion	17.6	21.06
Bra021192.1-P	Field mustard	plastid	17.43	21.03
AT1G63080.3	Thale cress	mitochondrion	21.22	21.01
Bra036651.1-P	Field mustard	mitochondrion	18.42	20.93
VIT_14s0030g02280.t01	Wine grape	plastid	19.24	20.86
AT1G62720.1	Thale cress	mitochondrion	16.61	20.82
Bra025516.1-P	Field mustard	cytosol, mitochondrion	16.28	20.75
AT3G16710.1	Thale cress	mitochondrion	17.27	20.71
AT3G22470.1	Thale cress	cytosol, mitochondrion	21.05	20.68
Solyc04g080120.1.1	Tomato	extracellular	20.72	20.59
PGSC0003DMT400015293	Potato	mitochondrion	20.39	20.33
PGSC0003DMT400015298	Potato	mitochondrion	20.39	20.33
AT1G62670.1	Thale cress	mitochondrion	21.05	20.32
AT1G63130.1	Thale cress	mitochondrion	21.05	20.32
AT1G62680.2	Thale cress	plastid	18.26	20.26
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.56	20.13
AT1G62910.1	Thale cress	mitochondrion	20.89	20.09
PGSC0003DMT400053182	Potato	cytosol	19.74	20.03
AT1G64580.1	Thale cress	mitochondrion	17.11	19.89
AT1G63400.1	Thale cress	cytosol, plastid	18.75	19.76
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.95	19.76
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.89	19.72
AT1G62930.1	Thale cress	plastid	20.39	19.71
AT1G63070.1	Thale cress	mitochondrion	19.08	19.66
KRH09095	Soybean	plastid	18.91	19.66
AT1G12700.2	Thale cress	cytosol	19.9	19.58
Bra026971.1-P	Field mustard	mitochondrion	20.23	19.55
KRH09097	Soybean	plastid	18.75	19.55
Bra028267.1-P	Field mustard	mitochondrion	20.07	19.49
Bra026957.1-P	Field mustard	mitochondrion	19.24	19.4
AT1G63150.1	Thale cress	mitochondrion	20.07	19.4
AT1G64583.1	Thale cress	mitochondrion	16.28	19.34
Bra027026.1-P	Field mustard	mitochondrion	16.61	19.31
PGSC0003DMT400053556	Potato	mitochondrion	14.47	19.17
AT5G41170.1	Thale cress	mitochondrion	16.61	19.17
AT1G12300.1	Thale cress	mitochondrion	20.07	19.15
AT1G62914.1	Thale cress	mitochondrion	16.61	19.13
AT1G62590.1	Thale cress	mitochondrion	19.9	19.09
AT1G06580.1	Thale cress	mitochondrion	15.62	19.0
KRH08599	Soybean	cytosol, plastid	20.89	18.98
Bra016762.1-P	Field mustard	mitochondrion	18.75	18.78
Bra026958.1-P	Field mustard	mitochondrion	19.57	18.68
Bra026954.1-P	Field mustard	mitochondrion	19.9	18.62
KRH12873	Soybean	cytosol	19.41	16.95
Bra027726.1-P	Field mustard	mitochondrion	12.99	16.77
KRH09085	Soybean	mitochondrion	19.41	16.76
AT1G64100.2	Thale cress	cytosol	22.2	16.75
Bra026401.1-P	Field mustard	plastid	14.64	16.64
AT4G26800.2	Thale cress	mitochondrion, plastid	13.16	15.56
Bra027656.1-P	Field mustard	cytosol	22.37	14.45
KRH39064	Soybean	cytosol	23.03	14.45
Bra016758.1-P	Field mustard	plastid	20.56	10.79
TraesCS6B01G129100.1	Wheat	cytosol, plastid	4.28	9.03

Protein Annotations

EnsemblPlants:TraesCS1B01G038400.1	EnsemblPlantsGene:TraesCS1B01G038400	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	MapMan:35.1

Description

No Description!

Coordinates

chr1B:-:18091427..18093253

Molecular Weight (calculated)

67624.9 Da

IEP (calculated)

7.412

GRAVY (calculated)

0.067

Length

608 amino acids

Sequence
(BLAST)

001: MPELGCTPNV VAYTTVIHGF FKEGQVGKAC NLFHGMAQQG VAPNLVTYNS VIDALCKAKA MDKAEYFLGQ MVDDGVVPDN VTYNSLIHGY SSSGHWKEAV
101: RVFKEMTSRR VTADVHTYNM FMTFLCKHGR SKEAAGIFDT MAMKGLKPDN VSYAILLHGY ATEGCLVDMI NLFNSMERDC ILPDCRIFNI LINAYAKSGK
201: LDKAMLIFNE MQKQGVSPNA VTYSTVIDAF CKKGQLDDAM IKFNQMIDTG VRQGTAVYGS LIQGFCTHGD LVKAKELLTE MMNKGMLPPD IKFFHSIMQN
301: LCTEGRVIEA RDVLGLIAHI GMRPDVCTFN ILIGGYCLVG KMEDASKIFD DMMSYGLEPS NITYGILING YCKNRRIDDG LILFKEMLHK GLKPTTFNYN
401: IILDGLLLAG RTVAAKEKFN EMVESGVSVC TDTYSIVLGG LRRNNCFSEA IMLFQKLRAM NMKFNIRIVN IMIDAFFRVQ RKQEAKDLFA AIPANGLVAN
501: VVTYSITMTN LIKEGSVEEA DDLFLSMEKS GCTADSYMLN LIVRMLLEKG ELVKAGNYMS KVDAMSYSLE AETVSLLISL FSGKGKYREH IGLLPAKYRF
601: REEAATVV

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.