Factsheet for HORVU1Hr1G004750.6

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
TargetP:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	85.34	97.42
TraesCS1B01G038600.1	Wheat	cytosol	39.85	87.6
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	83.46	84.63
TraesCS1B01G038300.1	Wheat	plastid	57.52	84.07
TraesCS1B01G039700.1	Wheat	cytosol	63.41	83.22
TraesCS2B01G126900.1	Wheat	cytosol	39.72	82.98
TraesCS1D01G033000.1	Wheat	cytosol	41.6	82.18
TraesCS1A01G031600.1	Wheat	cytosol	67.67	81.57
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	80.95	81.57
TraesCS1B01G038400.1	Wheat	cytosol	61.9	81.25
TraesCS1B01G039100.1	Wheat	mitochondrion	78.57	80.08
TraesCS1B01G039200.1	Wheat	mitochondrion	78.57	79.97
TraesCS1B01G038500.1	Wheat	mitochondrion	78.57	79.37
TraesCS1B01G038200.1	Wheat	mitochondrion	61.9	78.04
TraesCS1A01G031700.1	Wheat	plastid	71.18	76.65
TraesCS1B01G315500.1	Wheat	mitochondrion	30.7	76.32
HORVU0Hr1G035310.1	Barley	cytosol	45.49	62.37
HORVU1Hr1G011250.1	Barley	cytosol	22.93	62.03
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	46.62	58.22
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	60.53	58.19
HORVU1Hr1G010970.1	Barley	mitochondrion	60.15	58.11
HORVU6Hr1G076780.7	Barley	mitochondrion	59.27	57.4
HORVU1Hr1G014040.1	Barley	mitochondrion	59.9	57.38
HORVU1Hr1G013810.1	Barley	plastid	60.15	57.21
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	21.05	56.57
Zm00001d007534_P001	Maize	plastid	54.51	55.98
KXG28799	Sorghum	plastid	53.13	55.79
HORVU0Hr1G031920.1	Barley	plastid	60.03	55.7
Zm00001d007531_P001	Maize	plastid	54.89	53.81
Zm00001d007548_P001	Maize	plastid	54.76	53.69
Zm00001d007555_P001	Maize	plastid	54.76	53.69
Zm00001d007559_P001	Maize	plastid	54.64	53.37
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	51.13	53.26
HORVU1Hr1G011160.2	Barley	cytosol, plastid	59.65	53.18
HORVU1Hr1G011150.1	Barley	cytosol, plastid	58.52	52.89
HORVU1Hr1G010890.5	Barley	cytosol	58.77	52.23
HORVU1Hr1G014060.1	Barley	plastid	58.02	52.02
HORVU6Hr1G017870.2	Barley	mitochondrion	19.42	51.67
HORVU1Hr1G011400.44	Barley	plastid	39.85	51.62
KXG35774	Sorghum	cytosol, mitochondrion	30.45	51.37
HORVU1Hr1G011300.3	Barley	plastid	59.15	51.3
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	29.7	49.38
Os04t0349600-01	Rice	plastid	22.18	45.74
Os04t0351333-00	Rice	cytosol	47.99	43.57
HORVU1Hr1G018190.2	Barley	cytosol	14.91	41.75
HORVU6Hr1G014310.1	Barley	mitochondrion	34.09	39.59
HORVU6Hr1G002890.6	Barley	cytosol, plastid	39.22	39.37
Solyc06g007280.2.1	Tomato	cytosol	10.53	32.94
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.17	32.08
KRH39004	Soybean	cytosol	19.55	31.39
KRH39054	Soybean	cytosol	19.42	31.19
KRH39074	Soybean	cytosol	19.3	30.99
KRH39112	Soybean	cytosol	19.05	30.58
VIT_14s0081g00110.t01	Wine grape	cytosol	18.8	30.55
KRH39072	Soybean	cytosol	18.92	30.44
KRH39057	Soybean	cytosol	18.92	30.38
KRH09084	Soybean	plastid	19.3	30.14
Bra027029.1-P	Field mustard	mitochondrion	9.15	30.04
KRH40513	Soybean	plastid	13.16	29.91
Bra027636.1-P	Field mustard	cytosol	12.03	29.63
AT5G16640.1	Thale cress	mitochondrion	18.67	29.56
PGSC0003DMT400052977	Potato	cytosol	14.41	29.56
KRH17148	Soybean	mitochondrion	20.05	29.36
Bra006187.1-P	Field mustard	plastid	10.53	28.87
KRH39066	Soybean	cytosol	19.92	28.65
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	18.05	28.51
KRH41817	Soybean	mitochondrion	19.8	28.47
KRH48615	Soybean	mitochondrion	19.42	28.44
VIT_14s0081g00270.t01	Wine grape	plastid	20.55	28.28
KRH08636	Soybean	cytosol	18.42	28.16
Bra026882.1-P	Field mustard	cytosol	18.8	28.09
Solyc06g005220.2.1	Tomato	cytosol	14.29	28.08
VIT_14s0081g00120.t01	Wine grape	plastid	20.43	27.96
Bra036649.1-P	Field mustard	cytosol	13.66	27.88
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	18.3	27.81
Bra021192.1-P	Field mustard	plastid	17.42	27.58
KRH31646	Soybean	cytosol	17.79	27.41
AT3G16710.1	Thale cress	mitochondrion	17.29	27.22
AT1G63330.2	Thale cress	cytosol	19.05	27.19
KRH09154	Soybean	mitochondrion	18.92	27.16
KRH09121	Soybean	mitochondrion	18.17	27.15
Bra036651.1-P	Field mustard	mitochondrion	18.17	27.1
KRH08628	Soybean	plastid	18.67	26.99
KRH08277	Soybean	plastid	19.17	26.98
KRH09082	Soybean	cytosol	13.78	26.96
KRH08671	Soybean	cytosol, mitochondrion	18.67	26.94
KRH08639	Soybean	mitochondrion, plastid	19.05	26.9
KRH39050	Soybean	mitochondrion	17.92	26.88
Solyc06g007810.1.1	Tomato	cytosol	9.02	26.87
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.3	26.6
KRH25652	Soybean	cytosol, golgi	17.92	26.48
Bra026884.1-P	Field mustard	cytosol	15.16	26.36
PGSC0003DMT400008759	Potato	cytosol	10.53	26.33
KRH08625	Soybean	plastid	18.92	26.22
KRH08607	Soybean	cytosol	18.42	26.2
AT1G64583.1	Thale cress	mitochondrion	16.79	26.17
AT1G62930.1	Thale cress	plastid	20.55	26.07
VIT_14s0030g02280.t01	Wine grape	plastid	18.3	26.02
KRH40400	Soybean	plastid	18.67	25.82
AT1G64580.1	Thale cress	mitochondrion	16.92	25.81
AT1G12620.1	Thale cress	cytosol, mitochondrion	20.05	25.76
AT1G63130.1	Thale cress	mitochondrion	20.3	25.71
Solyc06g007300.1.1	Tomato	extracellular	19.05	25.68
Bra025516.1-P	Field mustard	cytosol, mitochondrion	15.29	25.58
AT1G62914.1	Thale cress	mitochondrion	16.92	25.57
AT1G62670.1	Thale cress	mitochondrion	20.18	25.56
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.8	25.52
PGSC0003DMT400008757	Potato	cytosol	15.91	25.5
KRH09097	Soybean	plastid	18.55	25.39
PGSC0003DMT400025074	Potato	cytosol	17.54	25.36
AT1G63400.1	Thale cress	cytosol, plastid	18.3	25.3
AT1G12300.1	Thale cress	mitochondrion	20.18	25.27
PGSC0003DMT400053185	Potato	mitochondrion	18.67	25.25
Bra027026.1-P	Field mustard	mitochondrion	16.54	25.24
CDX68679	Canola	cytosol	3.63	25.22
AT1G06580.1	Thale cress	mitochondrion	15.79	25.2
Bra031731.1-P	Field mustard	mitochondrion	16.04	25.2
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.3	25.16
AT1G62720.1	Thale cress	mitochondrion	15.29	25.15
KRH09095	Soybean	plastid	18.42	25.13
AT1G63070.1	Thale cress	mitochondrion	18.55	25.08
Solyc06g007740.1.1	Tomato	cytosol	18.55	25.08
AT1G62680.2	Thale cress	plastid	17.17	25.0
Bra026958.1-P	Field mustard	mitochondrion	19.8	24.8
Bra026971.1-P	Field mustard	mitochondrion	19.55	24.8
AT1G63080.3	Thale cress	mitochondrion	19.05	24.76
Solyc04g080120.1.1	Tomato	extracellular	18.92	24.67
AT1G62590.1	Thale cress	mitochondrion	19.55	24.61
AT1G62910.1	Thale cress	mitochondrion	19.42	24.53
AT5G41170.1	Thale cress	mitochondrion	16.17	24.48
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.16	24.44
PGSC0003DMT400015293	Potato	mitochondrion	18.67	24.43
PGSC0003DMT400015298	Potato	mitochondrion	18.67	24.43
AT1G63150.1	Thale cress	mitochondrion	19.17	24.32
Bra027658.1-P	Field mustard	cytosol, mitochondrion	16.54	24.31
PGSC0003DMT400052971	Potato	mitochondrion	18.05	24.28
Bra028267.1-P	Field mustard	mitochondrion	19.05	24.28
PGSC0003DMT400025067	Potato	cytosol	14.41	24.16
AT1G12700.2	Thale cress	cytosol	18.67	24.11
Bra027726.1-P	Field mustard	mitochondrion	14.16	23.99
Bra026836.1-P	Field mustard	cytosol, mitochondrion	14.66	23.83
PGSC0003DMT400056663	Potato	plastid	17.54	23.81
Bra026401.1-P	Field mustard	plastid	15.91	23.74
Bra016762.1-P	Field mustard	mitochondrion	18.05	23.72
Bra026957.1-P	Field mustard	mitochondrion	17.79	23.55
PGSC0003DMT400056665	Potato	mitochondrion	17.04	23.09
VIT_14s0030g02260.t01	Wine grape	cytosol	12.78	23.02
Bra026954.1-P	Field mustard	mitochondrion	18.67	22.92
PGSC0003DMT400053182	Potato	cytosol	17.17	22.87
PGSC0003DMT400008760	Potato	mitochondrion	16.67	22.7
PGSC0003DMT400053556	Potato	mitochondrion	13.03	22.66
AT4G26800.2	Thale cress	mitochondrion, plastid	14.54	22.57
KRH08599	Soybean	cytosol, plastid	18.8	22.42
KRH09085	Soybean	mitochondrion	19.05	21.59
AT1G64100.2	Thale cress	cytosol	21.05	20.84
KRH12873	Soybean	cytosol	17.17	19.68
Bra027656.1-P	Field mustard	cytosol	21.43	18.17
KRH39064	Soybean	cytosol	21.3	17.54
Bra016758.1-P	Field mustard	plastid	19.17	13.2

Protein Annotations

EnsemblPlants:HORVU1Hr1G004750.6	EnsemblPlantsGene:HORVU1Hr1G004750	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000B48952D	UniProt:A0A287EII8	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr1H:-:9846181..9851287

Molecular Weight (calculated)

88481.3 Da

IEP (calculated)

8.298

GRAVY (calculated)

0.032

Length

798 amino acids

Sequence
(BLAST)

001: TTCLPMKPVP RFSSTTPMSS LRLRLRLCAR HCSSTSKPSR RRGWDPHAAF AAAAERARSG NLTPQDAHNL FDELLQHGNP VQERPLNNLL AALARAPASN
101: TCRNGPALAV ALFSRMSQGA RRRLAEPTTC TYGILMDCCC RAHRLDLALA FFGRLFRTGL EAEQFVFNTL LKGLCHAKRA DEALEVLLHR MSELGCIPDV
201: VAYNMVIHGF FKEGQAGKAC SLFHEMAQLG VMPNVVTYTS VINALCKAKA MDKAEYFLRQ MVDNGVVPNN VTYNSLVHGY SSSGHQKEAV RVLKEMTSQG
301: IIPDVVTCNT LMASLCKNRR SKEAAEIIDY MVVKGLKPDI VSYSILLHGY ANEGCLVDMT NLFNSMTRAG ILPDCHALNI LINAYAKSGM MDEAMLIFKG
401: MRKQGVTPDV VTYSTVIDAF CKMGSLDDAM VKFNQMIDMG VQPDTAVYRS LIQSFCTHGD LVKAKELVTE MRNKGMRPPD IMFFHSIMQN LCTEGRVIEA
501: RDILDLIVHI GMRPDVFTFS LLIGGYCLVC KMADASKIYD DMMSYGLEPS NMTYGILING YCKNRRIDDG LILFKEMLCK GLKPTTFNYN VILDGLFLAG
601: RTVAAKEKFN EMVESGVSVC IDTYSIVLGG LCRNNCSSEA ITLFQKLSTM NVKFNIAIVN IIIGAFYRVQ RNQEAKDLFA AVSANGLVAD VFTYTIIMSN
701: LIKEGSVEEA DNLFSSMEKS GCTADSYMLN LIIRRLLEKG EIVKAGNYMS KVDAKSYSLE AKTVSLLISL FSGKGKYREH IRLLPTKYQF HEEAGTVE

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.