Factsheet for HORVU1Hr1G011300.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G035250.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	HORVU4Hr1G035250.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G011250.1	Barley	cytosol	30.65	95.59
HORVU1Hr1G010890.5	Barley	cytosol	93.26	95.55
HORVU0Hr1G035310.1	Barley	cytosol	60.22	95.19
HORVU0Hr1G031920.1	Barley	plastid	88.91	95.12
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.78	92.26
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	48.04	92.08
HORVU1Hr1G011160.2	Barley	cytosol, plastid	89.35	91.84
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	62.72	90.3
HORVU1Hr1G011150.1	Barley	cytosol, plastid	85.87	89.47
HORVU1Hr1G010970.1	Barley	mitochondrion	76.85	85.59
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	63.26	70.12
HORVU1Hr1G014040.1	Barley	mitochondrion	62.72	69.27
HORVU1Hr1G013810.1	Barley	plastid	61.41	67.34
HORVU1Hr1G011400.44	Barley	plastid	44.89	67.05
HORVU6Hr1G076780.7	Barley	mitochondrion	59.57	66.5
HORVU1Hr1G014060.1	Barley	plastid	62.07	64.16
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	45.43	59.8
HORVU1Hr1G004750.6	Barley	plastid	51.3	59.15
HORVU6Hr1G017870.2	Barley	mitochondrion	18.15	55.67
KXG28799	Sorghum	plastid	45.11	54.61
Zm00001d007534_P001	Maize	plastid	45.98	54.44
Zm00001d007531_P001	Maize	plastid	48.15	54.42
Zm00001d007548_P001	Maize	plastid	48.15	54.42
Zm00001d007555_P001	Maize	plastid	48.04	54.3
Zm00001d007559_P001	Maize	plastid	48.15	54.22
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	43.04	51.7
KXG35774	Sorghum	cytosol, mitochondrion	25.87	50.32
HORVU1Hr1G018190.2	Barley	cytosol	15.11	48.77
Os04t0351333-00	Rice	cytosol	42.93	44.94
Os04t0349600-01	Rice	plastid	18.7	44.44
HORVU6Hr1G014310.1	Barley	mitochondrion	32.07	42.94
HORVU6Hr1G002890.6	Barley	cytosol, plastid	35.76	41.38
Solyc06g007280.2.1	Tomato	cytosol	9.67	34.9
KRH39054	Soybean	cytosol	17.83	33.0
KRH39112	Soybean	cytosol	17.83	33.0
KRH39074	Soybean	cytosol	17.72	32.8
KRH39057	Soybean	cytosol	17.5	32.39
KRH39004	Soybean	cytosol	17.39	32.19
KRH09084	Soybean	plastid	17.5	31.51
KRH39072	Soybean	cytosol	16.96	31.45
KRH39066	Soybean	cytosol	18.59	30.81
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.87	30.61
PGSC0003DMT400052977	Potato	cytosol	12.93	30.59
AT5G16640.1	Thale cress	mitochondrion	16.74	30.56
KRH40513	Soybean	plastid	11.52	30.2
KRH08636	Soybean	cytosol	17.07	30.08
VIT_14s0081g00110.t01	Wine grape	cytosol	15.98	29.94
Bra026884.1-P	Field mustard	cytosol	14.78	29.63
CDX68679	Canola	cytosol	3.7	29.57
Solyc06g005220.2.1	Tomato	cytosol	13.04	29.56
KRH17148	Soybean	mitochondrion	17.5	29.54
Bra006187.1-P	Field mustard	plastid	9.24	29.21
KRH48615	Soybean	mitochondrion	17.28	29.17
KRH09121	Soybean	mitochondrion	16.85	29.03
KRH09154	Soybean	mitochondrion	17.5	28.96
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	15.87	28.91
Bra027029.1-P	Field mustard	mitochondrion	7.61	28.81
KRH08639	Soybean	mitochondrion, plastid	17.61	28.67
VIT_14s0081g00120.t01	Wine grape	plastid	18.15	28.64
KRH08628	Soybean	plastid	17.17	28.62
AT1G63330.2	Thale cress	cytosol	17.39	28.62
KRH08671	Soybean	cytosol, mitochondrion	17.07	28.39
KRH08607	Soybean	cytosol	17.28	28.34
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.02	28.27
KRH08277	Soybean	plastid	17.39	28.22
Bra026882.1-P	Field mustard	cytosol	16.3	28.09
AT1G12620.1	Thale cress	cytosol, mitochondrion	18.91	28.02
AT1G62670.1	Thale cress	mitochondrion	19.13	27.94
Bra027636.1-P	Field mustard	cytosol	9.78	27.78
KRH09082	Soybean	cytosol	12.28	27.7
AT1G63080.3	Thale cress	mitochondrion	18.48	27.69
Bra036649.1-P	Field mustard	cytosol	11.74	27.62
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	15.76	27.62
KRH08625	Soybean	plastid	17.28	27.6
KRH41817	Soybean	mitochondrion	16.63	27.57
KRH40400	Soybean	plastid	17.28	27.56
AT1G12300.1	Thale cress	mitochondrion	19.02	27.47
AT1G63070.1	Thale cress	mitochondrion	17.61	27.46
KRH25652	Soybean	cytosol, golgi	16.09	27.41
Bra036651.1-P	Field mustard	mitochondrion	15.87	27.29
PGSC0003DMT400008759	Potato	cytosol	9.46	27.27
KRH39050	Soybean	mitochondrion	15.76	27.26
Bra026971.1-P	Field mustard	mitochondrion	18.59	27.19
Bra031731.1-P	Field mustard	mitochondrion	15.0	27.17
Bra026958.1-P	Field mustard	mitochondrion	18.8	27.16
Bra027026.1-P	Field mustard	mitochondrion	15.43	27.15
Solyc06g007740.1.1	Tomato	cytosol	17.39	27.12
VIT_14s0081g00270.t01	Wine grape	plastid	17.07	27.07
AT1G62910.1	Thale cress	mitochondrion	18.59	27.06
AT1G12775.1	Thale cress	cytosol, mitochondrion	18.91	27.02
AT1G63130.1	Thale cress	mitochondrion	18.48	26.98
Bra021192.1-P	Field mustard	plastid	14.78	26.98
PGSC0003DMT400025087	Potato	endoplasmic reticulum	14.46	26.87
Solyc06g007810.1.1	Tomato	cytosol	7.83	26.87
Solyc06g007300.1.1	Tomato	extracellular	17.28	26.86
Bra016762.1-P	Field mustard	mitochondrion	17.72	26.85
Bra028267.1-P	Field mustard	mitochondrion	18.26	26.84
KRH31646	Soybean	cytosol	15.11	26.83
PGSC0003DMT400025074	Potato	cytosol	16.09	26.81
Bra026954.1-P	Field mustard	mitochondrion	18.8	26.62
AT1G62930.1	Thale cress	plastid	18.15	26.55
AT1G62590.1	Thale cress	mitochondrion	18.26	26.5
AT3G16710.1	Thale cress	mitochondrion	14.57	26.43
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.7	26.42
PGSC0003DMT400025067	Potato	cytosol	13.59	26.26
VIT_14s0030g02280.t01	Wine grape	plastid	15.98	26.2
PGSC0003DMT400056663	Potato	plastid	16.74	26.19
KRH09095	Soybean	plastid	16.63	26.15
PGSC0003DMT400053185	Potato	mitochondrion	16.74	26.1
AT1G63400.1	Thale cress	cytosol, plastid	16.3	26.0
PGSC0003DMT400056665	Potato	mitochondrion	16.63	25.98
AT1G62914.1	Thale cress	mitochondrion	14.89	25.95
AT1G63150.1	Thale cress	mitochondrion	17.72	25.91
AT1G62680.2	Thale cress	plastid	15.43	25.91
KRH09097	Soybean	plastid	16.41	25.9
AT1G12700.2	Thale cress	cytosol	17.39	25.89
VIT_14s0081g00280.t01	Wine grape	mitochondrion	17.93	25.82
AT1G64580.1	Thale cress	mitochondrion	14.67	25.81
PGSC0003DMT400008760	Potato	mitochondrion	16.41	25.77
PGSC0003DMT400008757	Potato	cytosol	13.91	25.7
PGSC0003DMT400052971	Potato	mitochondrion	16.52	25.63
Bra026836.1-P	Field mustard	cytosol, mitochondrion	13.48	25.25
Bra027658.1-P	Field mustard	cytosol, mitochondrion	14.89	25.23
Bra026957.1-P	Field mustard	mitochondrion	16.52	25.21
AT1G64583.1	Thale cress	mitochondrion	14.02	25.2
AT1G62720.1	Thale cress	mitochondrion	13.26	25.15
AT5G41170.1	Thale cress	mitochondrion	14.35	25.05
Bra026401.1-P	Field mustard	plastid	14.13	24.3
PGSC0003DMT400053182	Potato	cytosol	15.76	24.21
Solyc04g080120.1.1	Tomato	extracellular	16.09	24.18
AT4G26800.2	Thale cress	mitochondrion, plastid	13.48	24.12
AT1G06580.1	Thale cress	mitochondrion	13.04	24.0
PGSC0003DMT400015293	Potato	mitochondrion	15.76	23.77
PGSC0003DMT400015298	Potato	mitochondrion	15.76	23.77
KRH08599	Soybean	cytosol, plastid	16.96	23.32
PGSC0003DMT400053556	Potato	mitochondrion	11.63	23.31
Bra027726.1-P	Field mustard	mitochondrion	11.63	22.72
AT1G64100.2	Thale cress	cytosol	19.78	22.58
VIT_14s0030g02260.t01	Wine grape	cytosol	10.76	22.35
KRH09085	Soybean	mitochondrion	16.52	21.59
KRH12873	Soybean	cytosol	14.78	19.54
Bra027656.1-P	Field mustard	cytosol	19.46	19.02
KRH39064	Soybean	cytosol	18.8	17.85
Bra016758.1-P	Field mustard	plastid	18.15	14.41

Protein Annotations

EnsemblPlants:HORVU1Hr1G011300.3	EnsemblPlantsGene:HORVU1Hr1G011300	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000B47D623	UniProt:A0A287EMD1	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chrchr1H:+:27069862..27075361

Molecular Weight (calculated)

101956.0 Da

IEP (calculated)

9.121

GRAVY (calculated)

-0.005

Length

920 amino acids

Sequence
(BLAST)

001: PVIVSCVFVN TMTKVNSRVK FTNNTRLTQT SKTRFTICDS KIQIESSLHR VPTRRPLPPT MSRIRLCRRS SCFLCPSSFT SPIQRPCFRR SSYIQPKSGL
101: HLRHCSTTPM SRVRLHRRLL SSTSPPSPSW SPRDAFAAAT ERVRAGTLSR DDAHHMFDEL FRQATPVPER SLNGFLAALA RATSSSACIT DGPALALALF
201: NRVCREEAGT QVAVPTFCTY SILMDCCCRA RRPDLGLALF GCILRAGLKI HQITANTLLK CLCYADRTEE AVNVLLHRMS ELGCVLDSFS YSIILKALCD
301: NSMSQRALDL FQMMAKQGGA CSPDVVAYST VIHGFFNEGE TGKACSLFHE MTRQGVKPDV VTYNLIIDAL CKARAMDKAE LVLRQMTTDG AQPDTVTYSC
401: MIHGYATLGR LKEAAKMFRE MKKRGLIPDI VTCNSLMASL CKHGRSKEAA EFFDSMTAKG HKPDIVSYCT LLHGYASEGW FADMIGLFNS MKSNGIAADC
501: RVFTILIHAY AKRGMVDDAM LIFTEMQQQG VSPNVVTYST VISAFSRMGR LTDAMEKFNQ MVARGIQPNT AVYRSIIQGF CMHGGLVKAK ELVSEMINKG
601: IPRPDIVFFN SVINSLCKDG RVMDAHDIFD LVTDIGERPD VIIFNSLIDG YCLVGKMDKA FKILDAMEVV GVEPDIVAYS TLLDGYFKNG RINDGLTLFR
701: EMQRKGVKPN TVTYGIMLAG LFRAGRTVAA RKKFHEMIES GTTVTVSTYG IILGGLCRNN CADEAIVLFQ KLGTMNVKFS ITILDTMINA MYKVQRKEEA
801: KELFATISAS GLLPNESTYG VMIINLLKDG AVEDANNMFS SMEKSGIVPG SRLLNRIIRM LLEKGEIAKA GNYLSKVDGK RILLEASTTS LMLSLFSRKG
901: KYHEDMKLLP AKYNFFDGFG

Best Arabidopsis Sequence Match ( AT1G62670.1 )
(BLAST)

001: MRISFAIAST AKRFVHRSLV VRGNAATVSP SFSFFWRRAF SGKTSYDYRE KLSRNGLSEL KLDDAVALFG EMVKSRPFPS IIEFSKLLSA IAKMNKFDVV
101: ISLGEQMQNL GIPHNHYTYS ILINCFCRRS QLPLALAVLG KMMKLGYEPN IVTLSSLLNG YCHSKRISEA VALVDQMFVT GYQPNTVTFN TLIHGLFLHN
201: KASEAMALID RMVAKGCQPD LVTYGVVVNG LCKRGDTDLA FNLLNKMEQG KLEPGVLIYN TIIDGLCKYK HMDDALNLFK EMETKGIRPN VVTYSSLISC
301: LCNYGRWSDA SRLLSDMIER KINPDVFTFS ALIDAFVKEG KLVEAEKLYD EMVKRSIDPS IVTYSSLING FCMHDRLDEA KQMFEFMVSK HCFPDVVTYN
401: TLIKGFCKYK RVEEGMEVFR EMSQRGLVGN TVTYNILIQG LFQAGDCDMA QEIFKEMVSD GVPPNIMTYN TLLDGLCKNG KLEKAMVVFE YLQRSKMEPT
501: IYTYNIMIEG MCKAGKVEDG WDLFCNLSLK GVKPDVVAYN TMISGFCRKG SKEEADALFK EMKEDGTLPN SGCYNTLIRA RLRDGDREAS AELIKEMRSC
601: GFAGDASTIG LVTNMLHDGR LDKSFLDMLS

Arabidopsis Description

RPF2Pentatricopeptide repeat-containing protein At1g62670, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.