Factsheet for Os04t0349600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0596900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	Os03t0596900-01	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G315500.1	Wheat	mitochondrion	35.4	42.68
TraesCS1D01G075800.1	Wheat	mitochondrion, plastid	37.21	42.11
TraesCS1D01G068600.1	Wheat	plastid	36.18	41.18
TraesCS1A01G073800.1	Wheat	mitochondrion	33.85	39.34
TraesCS1D01G057800.1	Wheat	mitochondrion	36.43	38.84
TraesCS1A01G067700.1	Wheat	extracellular	30.75	35.31
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	67.96	34.33
HORVU2Hr1G105460.11	Barley	mitochondrion, plastid	42.38	34.17
TraesCS1D01G056600.1	Wheat	mitochondrion	17.31	33.17
HORVU1Hr1G010990.1	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	25.06	32.66
TraesCS1A01G074000.1	Wheat	mitochondrion	23.51	32.16
TraesCS1D01G076800.1	Wheat	cytosol, mitochondrion	18.86	32.02
TraesCS1A01G055500.1	Wheat	mitochondrion	17.57	31.34
Os08t0107700-01	Rice	cytosol, mitochondrion	30.23	31.28
TraesCS1A01G066600.1	Wheat	mitochondrion	20.93	30.8
TraesCS1B01G072300.1	Wheat	plastid	44.44	30.28
TraesCS2B01G126900.1	Wheat	cytosol	29.46	29.84
TraesCS1D01G058000.1	Wheat	cytosol	29.72	28.33
TraesCS1B01G092600.1	Wheat	plastid	37.73	28.24
HORVU1Hr1G011250.1	Barley	cytosol	20.93	27.46
Os08t0248400-01	Rice	mitochondrion	31.01	27.27
TraesCS1B01G038200.1	Wheat	mitochondrion	43.41	26.54
Os10t0497432-01	Rice	mitochondrion	18.09	26.32
Os10t0495100-01	Rice	cytosol, mitochondrion	30.75	25.81
TraesCS1B01G086000.1	Wheat	plastid	44.44	25.07
Os04t0351333-00	Rice	cytosol	54.01	23.78
Os10t0499500-01	Rice	mitochondrion	31.01	23.72
Os10t0497366-00	Rice	mitochondrion	24.55	23.69
TraesCS1A01G073600.1	Wheat	mitochondrion	23.77	23.47
TraesCS1A01G031700.1	Wheat	plastid	44.7	23.35
TraesCS6D01G290900.1	Wheat	mitochondrion	43.93	23.19
TraesCS1D01G033100.1	Wheat	mitochondrion, plastid	46.77	23.0
TraesCS1B01G039200.1	Wheat	mitochondrion	45.99	22.7
TraesCS1A01G067400.1	Wheat	mitochondrion	48.32	22.67
TraesCS1D01G068400.1	Wheat	mitochondrion	48.06	22.6
TraesCS1D01G032300.1	Wheat	mitochondrion, plastid	45.99	22.47
Solyc06g007280.2.1	Tomato	cytosol	14.73	22.35
TraesCS1B01G039100.1	Wheat	mitochondrion	44.96	22.22
HORVU1Hr1G004750.6	Barley	plastid	45.74	22.18
TraesCS1B01G085900.1	Wheat	mitochondrion	46.51	22.11
TraesCS1D01G068500.1	Wheat	mitochondrion	46.25	22.04
TraesCS1B01G038500.1	Wheat	mitochondrion	44.7	21.9
TraesCS1A01G067600.1	Wheat	mitochondrion	45.99	21.89
TraesCS1B01G074600.1	Wheat	mitochondrion, plastid	43.93	21.79
TraesCS1D01G069100.1	Wheat	mitochondrion	36.18	21.77
KXG28799	Sorghum	plastid	42.38	21.58
TraesCS1D01G068900.1	Wheat	mitochondrion	45.22	21.53
TraesCS1D01G068800.1	Wheat	plastid	45.22	21.45
TraesCS1A01G054700.2	Wheat	mitochondrion	44.7	21.31
HORVU1Hr1G014030.2	Barley	mitochondrion, plastid	45.48	21.2
HORVU1Hr1G014040.1	Barley	mitochondrion	44.96	20.89
Zm00001d007534_P001	Maize	plastid	41.6	20.72
TraesCS1D01G056200.1	Wheat	mitochondrion	43.93	20.61
HORVU1Hr1G010970.1	Barley	mitochondrion	43.93	20.58
HORVU6Hr1G076780.7	Barley	mitochondrion	43.67	20.51
HORVU0Hr1G031920.1	Barley	plastid	45.48	20.47
TraesCS1D01G076400.1	Wheat	cytosol	19.12	20.39
HORVU1Hr1G013810.1	Barley	plastid	44.19	20.38
TraesCS1A01G055800.1	Wheat	mitochondrion	40.57	20.36
TraesCS1B01G071600.1	Wheat	mitochondrion	44.44	20.28
TraesCS6A01G311600.1	Wheat	mitochondrion	43.67	20.22
Zm00001d007555_P001	Maize	plastid	42.12	20.02
HORVU1Hr1G014060.1	Barley	plastid	45.99	20.0
TraesCS1B01G072900.2	Wheat	mitochondrion	44.96	19.93
Zm00001d007531_P001	Maize	plastid	41.6	19.78
HORVU1Hr1G011160.2	Barley	cytosol, plastid	45.48	19.66
Zm00001d007548_P001	Maize	plastid	41.34	19.66
Zm00001d007559_P001	Maize	plastid	41.34	19.58
TraesCS1B01G092500.1	Wheat	mitochondrion	39.28	19.41
HORVU1Hr1G010890.5	Barley	cytosol	44.96	19.38
TraesCS1B01G085300.1	Wheat	mitochondrion	39.53	19.32
TraesCS1B01G072700.1	Wheat	cytosol	25.32	19.22
HORVU1Hr1G011400.44	Barley	plastid	30.49	19.16
TraesCS1B01G073200.1	Wheat	cytosol	14.99	19.14
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	35.14	18.97
HORVU1Hr1G011150.1	Barley	cytosol, plastid	43.15	18.91
Os08t0107800-01	Rice	mitochondrion	30.49	18.91
HORVU7Hr1G029840.1	Barley	cytosol, mitochondrion	34.11	18.88
Os10t0501700-00	Rice	cytosol	21.96	18.72
TraesCS1D01G076900.1	Wheat	plastid	31.78	18.72
HORVU1Hr1G011300.3	Barley	plastid	44.44	18.7
TraesCS1B01G075000.1	Wheat	cytosol, mitochondrion	32.04	18.67
TraesCS1D01G058400.1	Wheat	cytosol	24.81	18.64
TraesCS1A01G054500.1	Wheat	mitochondrion	37.47	18.59
TraesCS1A01G031600.1	Wheat	cytosol	31.27	18.28
TraesCS1A01G054800.1	Wheat	cytosol	27.13	18.04
TraesCS1B01G072400.1	Wheat	cytosol	32.04	17.84
TraesCS1B01G073100.1	Wheat	cytosol	27.39	17.49
TraesCS1B01G039700.1	Wheat	cytosol	27.39	17.43
TraesCS1D01G056700.1	Wheat	cytosol	27.13	17.3
TraesCS1B01G038400.1	Wheat	cytosol	27.13	17.27
TraesCS1D01G055300.1	Wheat	cytosol	27.39	17.15
TraesCS1A01G057300.1	Wheat	cytosol	31.52	16.99
HORVU0Hr1G035310.1	Barley	cytosol	25.32	16.84
KRH40513	Soybean	plastid	15.25	16.81
TraesCS1D01G058200.1	Wheat	extracellular, mitochondrion	30.23	16.79
TraesCS1B01G075300.1	Wheat	cytosol	25.84	16.75
KRH09084	Soybean	plastid	21.96	16.63
Os10t0495200-01	Rice	mitochondrion	33.33	16.5
TraesCS1A01G067000.1	Wheat	mitochondrion	30.23	16.34
KRH08636	Soybean	cytosol	21.96	16.28
TraesCS1B01G085400.1	Wheat	cytosol	26.61	16.07
Os10t0497300-01	Rice	mitochondrion	32.82	15.99
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.64	15.93
HORVU1Hr1G011020.4	Barley	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	26.1	15.81
KRH08628	Soybean	plastid	22.48	15.76
KRH08639	Soybean	mitochondrion, plastid	23.0	15.75
KRH08277	Soybean	plastid	23.0	15.7
KRH39050	Soybean	mitochondrion	21.45	15.6
KRH39004	Soybean	cytosol	19.9	15.49
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.16	15.45
TraesCS1D01G055500.1	Wheat	cytosol, mitochondrion	26.61	15.3
KRH39054	Soybean	cytosol	19.64	15.29
KRH40400	Soybean	plastid	22.74	15.25
KRH48615	Soybean	mitochondrion	21.45	15.23
TraesCS1D01G076500.1	Wheat	mitochondrion	26.1	15.21
KRH08671	Soybean	cytosol, mitochondrion	21.71	15.19
KRH09154	Soybean	mitochondrion	21.71	15.11
KRH39112	Soybean	cytosol	19.38	15.09
TraesCS1D01G058500.1	Wheat	plastid	22.22	15.09
KRH41817	Soybean	mitochondrion	21.45	14.96
KRH09097	Soybean	plastid	22.48	14.92
KRH39072	Soybean	cytosol	19.12	14.92
KRH39057	Soybean	cytosol	19.12	14.89
KRH09121	Soybean	mitochondrion	20.41	14.79
KRH39066	Soybean	cytosol	21.19	14.77
TraesCS1B01G038300.1	Wheat	plastid	20.67	14.65
KRH08625	Soybean	plastid	21.71	14.58
KRH08607	Soybean	cytosol	20.93	14.44
AT1G62914.1	Thale cress	mitochondrion	19.64	14.39
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	19.38	14.29
KRH39074	Soybean	cytosol	18.35	14.29
VIT_14s0030g02280.t01	Wine grape	plastid	20.67	14.26
AT4G26800.2	Thale cress	mitochondrion, plastid	18.86	14.2
KRH09095	Soybean	plastid	21.45	14.19
KRH31646	Soybean	cytosol	18.86	14.09
VIT_14s0081g00110.t01	Wine grape	cytosol	17.57	13.85
AT1G63080.3	Thale cress	mitochondrion	21.96	13.84
VIT_14s0081g00270.t01	Wine grape	plastid	20.67	13.79
Os08t0110200-01	Rice	mitochondrion	28.42	13.78
KRH17148	Soybean	mitochondrion	19.38	13.76
AT5G16640.1	Thale cress	mitochondrion	17.83	13.69
AT1G63070.1	Thale cress	mitochondrion	20.67	13.56
VIT_14s0081g00120.t01	Wine grape	plastid	20.41	13.55
AT1G62930.1	Thale cress	plastid	21.96	13.51
PGSC0003DMT400053556	Potato	mitochondrion	16.02	13.51
AT1G62670.1	Thale cress	mitochondrion	21.96	13.49
PGSC0003DMT400025074	Potato	cytosol	19.12	13.41
AT1G63400.1	Thale cress	cytosol, plastid	19.9	13.34
AT1G63130.1	Thale cress	mitochondrion	21.71	13.33
Bra021192.1-P	Field mustard	plastid	17.31	13.29
AT1G62910.1	Thale cress	mitochondrion	21.45	13.13
AT1G12700.2	Thale cress	cytosol	20.93	13.11
Bra036649.1-P	Field mustard	cytosol	13.18	13.04
AT1G64580.1	Thale cress	mitochondrion	17.57	13.0
KRH25652	Soybean	cytosol, golgi	18.09	12.96
AT1G63330.2	Thale cress	cytosol	18.6	12.88
Bra026971.1-P	Field mustard	mitochondrion	20.93	12.88
AT1G06580.1	Thale cress	mitochondrion	16.54	12.8
Bra026957.1-P	Field mustard	mitochondrion	19.9	12.77
Solyc06g007740.1.1	Tomato	cytosol	19.38	12.71
Bra026401.1-P	Field mustard	plastid	17.57	12.71
KXG35774	Sorghum	cytosol, mitochondrion	15.5	12.69
Solyc06g007300.1.1	Tomato	extracellular	19.38	12.67
Bra027636.1-P	Field mustard	cytosol	10.59	12.65
PGSC0003DMT400025067	Potato	cytosol	15.5	12.61
AT1G62720.1	Thale cress	mitochondrion	15.76	12.58
PGSC0003DMT400056665	Potato	mitochondrion	19.12	12.56
Bra026958.1-P	Field mustard	mitochondrion	20.67	12.56
PGSC0003DMT400053185	Potato	mitochondrion	19.12	12.54
PGSC0003DMT400025087	Potato	endoplasmic reticulum	16.02	12.53
VIT_14s0081g00280.t01	Wine grape	mitochondrion	20.67	12.52
AT1G12300.1	Thale cress	mitochondrion	20.41	12.4
AT1G63150.1	Thale cress	mitochondrion	20.16	12.4
Bra016762.1-P	Field mustard	mitochondrion	19.38	12.36
Bra036651.1-P	Field mustard	mitochondrion	17.05	12.34
AT1G62590.1	Thale cress	mitochondrion	20.16	12.3
AT3G22470.1	Thale cress	cytosol, mitochondrion	19.64	12.28
PGSC0003DMT400052971	Potato	mitochondrion	18.6	12.14
Bra028267.1-P	Field mustard	mitochondrion	19.64	12.14
PGSC0003DMT400052977	Potato	cytosol	12.14	12.08
PGSC0003DMT400056663	Potato	plastid	18.35	12.07
Solyc06g005220.2.1	Tomato	cytosol	12.66	12.07
KRH09082	Soybean	cytosol	12.66	12.01
KRH09085	Soybean	mitochondrion	21.71	11.93
AT1G64583.1	Thale cress	mitochondrion	15.76	11.91
AT1G62680.2	Thale cress	plastid	16.8	11.86
PGSC0003DMT400008757	Potato	cytosol	15.25	11.85
KRH08599	Soybean	cytosol, plastid	20.41	11.81
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.64	11.8
Bra026882.1-P	Field mustard	cytosol	16.28	11.8
Bra027026.1-P	Field mustard	mitochondrion	15.76	11.66
AT3G16710.1	Thale cress	mitochondrion	15.25	11.64
PGSC0003DMT400008760	Potato	mitochondrion	17.57	11.6
AT1G12620.1	Thale cress	cytosol, mitochondrion	18.6	11.59
Bra026884.1-P	Field mustard	cytosol	13.7	11.55
Bra026954.1-P	Field mustard	mitochondrion	19.38	11.54
Bra031731.1-P	Field mustard	mitochondrion	14.47	11.02
Bra027726.1-P	Field mustard	mitochondrion	13.18	10.83
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.18	10.69
PGSC0003DMT400053182	Potato	cytosol	16.54	10.68
Bra027658.1-P	Field mustard	cytosol, mitochondrion	14.73	10.5
PGSC0003DMT400015293	Potato	mitochondrion	16.54	10.49
PGSC0003DMT400015298	Potato	mitochondrion	16.54	10.49
AT5G41170.1	Thale cress	mitochondrion	13.95	10.25
Solyc04g080120.1.1	Tomato	extracellular	15.76	9.97
Bra027029.1-P	Field mustard	mitochondrion	6.2	9.88
AT1G64100.2	Thale cress	cytosol	20.16	9.68
KRH12873	Soybean	cytosol	16.28	9.05
Bra027656.1-P	Field mustard	cytosol	20.93	8.61
KRH39064	Soybean	cytosol	21.19	8.46
Bra026836.1-P	Field mustard	cytosol, mitochondrion	10.59	8.35
Bra006187.1-P	Field mustard	plastid	5.94	7.9
TraesCS1B01G084800.1	Wheat	cytosol	8.79	7.33
Bra016758.1-P	Field mustard	plastid	20.93	6.99
VIT_14s0030g02260.t01	Wine grape	cytosol	6.98	6.09
PGSC0003DMT400008759	Potato	cytosol	4.65	5.64
TraesCS1D01G068700.1	Wheat	cytosol	4.39	3.87
TraesCS1A01G073700.1	Wheat	cytosol	3.62	3.64
TraesCS1D01G067600.1	Wheat	cytosol	3.36	3.56
TraesCS1B01G038600.1	Wheat	cytosol	3.1	3.31
TraesCS1A01G067800.1	Wheat	cytosol	3.1	3.21
TraesCS1D01G076700.1	Wheat	cytosol	2.58	2.99
TraesCS1A01G055600.1	Wheat	cytosol	2.33	2.77
TraesCS1D01G057700.1	Wheat	cytosol	2.33	2.77
TraesCS6B01G341800.2	Wheat	cytosol	2.84	2.76
TraesCS1D01G033000.1	Wheat	cytosol	2.84	2.72
TraesCS1A01G056000.1	Wheat	cytosol	2.58	2.49
Solyc06g007810.1.1	Tomato	cytosol	1.03	1.49
CDX68679	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0P0W913	ProteinID:BAS88716.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlantsGene:Os04g0349600	EnsemblPlants:Os04t0349600-01	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF874	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000393A4F3
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os04t0349600-01)

Coordinates

chr4:+:16661799..16664487

Molecular Weight (calculated)

42585.2 Da

IEP (calculated)

9.228

GRAVY (calculated)

-0.183

Length

387 amino acids

Sequence
(BLAST)

001: MCSASRSHHS PRRRPTPVSS SSPSSGRDHR SMSSRPRLSS IFAASTTAST TTTTVAASPA RPLPPAYAAF QERLRSGTLG PDDARHLFDE SLLRRDDPAP
101: APAPARAISD ILAALARAPP SAACSDGPAL AVELFKRMDR WACPHAAADA PTIYTYNIPH RRATCRMHRP ELALAVFGRL LRTGLGPDVC SYNTLIDGFS
201: KEGEVDKAYE LFYKMIEQSV SPDVVTYNSL IDGLCKTKEM VKSERVLEQM VDAGIRPNNK TYNSLIYGYS TAGMWKESVR VFKEMSSSGL IPCVVNCNSF
301: IHALCRHNRI KEAKDIFDSM VLKGPKPNII SYSTLLHGYA AEGCFANMNS LVNLMVSKEL AGWMMLCTNS TTWLILVYHR VRLFTAV

Best Arabidopsis Sequence Match ( AT1G12700.1 )
(BLAST)

001: MMIKRSITTN MKALRLIQPH LLKTGSLRTD LLCTISSFFS SCERDFSSIS NGNVCFRERL RSGIVDIKKD DAIALFQEMI RSRPLPSLVD FSRFFSAIAR
101: TKQFNLVLDF CKQLELNGIA HNIYTLNIMI NCFCRCCKTC FAYSVLGKVM KLGYEPDTTT FNTLIKGLFL EGKVSEAVVL VDRMVENGCQ PDVVTYNSIV
201: NGICRSGDTS LALDLLRKME ERNVKADVFT YSTIIDSLCR DGCIDAAISL FKEMETKGIK SSVVTYNSLV RGLCKAGKWN DGALLLKDMV SREIVPNVIT
301: FNVLLDVFVK EGKLQEANEL YKEMITRGIS PNIITYNTLM DGYCMQNRLS EANNMLDLMV RNKCSPDIVT FTSLIKGYCM VKRVDDGMKV FRNISKRGLV
401: ANAVTYSILV QGFCQSGKIK LAEELFQEMV SHGVLPDVMT YGILLDGLCD NGKLEKALEI FEDLQKSKMD LGIVMYTTII EGMCKGGKVE DAWNLFCSLP
501: CKGVKPNVMT YTVMISGLCK KGSLSEANIL LRKMEEDGNA PNDCTYNTLI RAHLRDGDLT ASAKLIEEMK SCGFSADASS IKMVIDMLLS GELDKSFLDM
601: LS

Arabidopsis Description

ATP binding;nucleic acid binding;helicases [Source:TAIR;Acc:AT1G12700]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.