Factsheet for TraesCS1A01G067000.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G085300.1	Wheat	mitochondrion	91.76	82.95
TraesCS1A01G067800.1	Wheat	cytosol	38.83	74.33
TraesCS1A01G055600.1	Wheat	cytosol	31.98	70.46
TraesCS1A01G073700.1	Wheat	cytosol	36.31	67.53
TraesCS1A01G054800.1	Wheat	cytosol	54.47	67.01
TraesCS1A01G056000.1	Wheat	cytosol	37.57	66.92
TraesCS1A01G067700.1	Wheat	extracellular	30.59	64.99
TraesCS1A01G073600.1	Wheat	mitochondrion	34.78	63.52
TraesCS1A01G067600.1	Wheat	mitochondrion	71.65	63.1
TraesCS1A01G057300.1	Wheat	cytosol	62.29	62.12
HORVU1Hr1G013810.1	Barley	plastid	70.53	60.19
TraesCS1A01G067400.1	Wheat	mitochondrion	69.13	60.0
TraesCS1A01G054500.1	Wheat	mitochondrion	65.22	59.87
TraesCS6A01G311600.1	Wheat	mitochondrion	69.13	59.21
TraesCS1A01G055800.1	Wheat	mitochondrion	63.55	59.01
TraesCS1A01G054700.2	Wheat	mitochondrion	66.34	58.5
TraesCS1A01G031600.1	Wheat	cytosol	53.91	58.31
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	58.24	58.16
TraesCS2A01G531100.1	Wheat	cytosol	44.69	56.24
TraesCS2A01G531000.1	Wheat	golgi	50.98	53.76
TraesCS2A01G526200.1	Wheat	golgi	50.42	53.01
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	37.71	52.84
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	26.82	50.79
KXG35774	Sorghum	cytosol, mitochondrion	32.82	49.68
TraesCS1A01G031700.1	Wheat	plastid	50.28	48.58
TraesCS2A01G530600.1	Wheat	cytosol	51.54	48.24
KXG28799	Sorghum	plastid	50.56	47.63
TraesCS6A01G014600.1	Wheat	cytosol	26.26	47.59
Zm00001d007531_P001	Maize	plastid	53.77	47.3
Zm00001d007548_P001	Maize	plastid	53.77	47.3
Zm00001d007559_P001	Maize	plastid	53.91	47.25
Zm00001d007555_P001	Maize	plastid	53.63	47.17
Zm00001d007534_P001	Maize	plastid	50.98	46.98
TraesCS1A01G073800.1	Wheat	mitochondrion	20.39	43.84
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	46.79	43.73
TraesCS6A01G083000.1	Wheat	cytosol	26.26	41.23
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	41.06	41.18
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	27.09	40.08
Os04t0351333-00	Rice	cytosol	47.63	38.79
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	26.96	38.37
TraesCS6A01G015000.1	Wheat	mitochondrion	21.09	36.39
TraesCS1A01G066600.1	Wheat	mitochondrion	12.29	33.46
Solyc06g007280.2.1	Tomato	cytosol	11.87	33.33
TraesCS1A01G074000.1	Wheat	mitochondrion	12.71	32.16
TraesCS1A01G055500.1	Wheat	mitochondrion	9.36	30.88
VIT_14s0081g00110.t01	Wine grape	cytosol	21.09	30.75
PGSC0003DMT400052977	Potato	cytosol	16.48	30.33
Solyc06g005220.2.1	Tomato	cytosol	17.18	30.3
Os04t0349600-01	Rice	plastid	16.34	30.23
Bra027636.1-P	Field mustard	cytosol	13.27	29.32
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	10.34	29.25
KRH39112	Soybean	cytosol	20.25	29.18
Solyc06g007810.1.1	Tomato	cytosol	10.89	29.1
PGSC0003DMT400008759	Potato	cytosol	12.85	28.84
KRH39004	Soybean	cytosol	19.97	28.77
KRH39054	Soybean	cytosol	19.97	28.77
VIT_12s0028g02320.t01	Wine grape	mitochondrion	19.13	28.72
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	20.11	28.51
KRH39057	Soybean	cytosol	19.69	28.37
KRH39074	Soybean	cytosol	19.55	28.17
KRH39072	Soybean	cytosol	19.27	27.82
Bra026884.1-P	Field mustard	cytosol	17.74	27.67
KRH08636	Soybean	cytosol	20.11	27.59
KRH09082	Soybean	cytosol	15.36	26.96
Bra027029.1-P	Field mustard	mitochondrion	9.08	26.75
KRH17148	Soybean	mitochondrion	20.25	26.61
Bra026882.1-P	Field mustard	cytosol	19.83	26.59
KRH08628	Soybean	plastid	20.25	26.27
KRH48615	Soybean	mitochondrion	19.97	26.24
CDX68679	Canola	cytosol	4.19	26.09
KRH08671	Soybean	cytosol, mitochondrion	20.11	26.04
KRH39066	Soybean	cytosol	19.97	25.77
VIT_14s0081g00120.t01	Wine grape	plastid	20.95	25.73
VIT_14s0081g00270.t01	Wine grape	plastid	20.81	25.69
PGSC0003DMT400025087	Potato	endoplasmic reticulum	17.74	25.66
KRH09084	Soybean	plastid	18.3	25.64
PGSC0003DMT400025067	Potato	cytosol	17.04	25.63
AT1G63330.2	Thale cress	cytosol	19.97	25.58
KRH08277	Soybean	plastid	20.25	25.57
KRH08607	Soybean	cytosol	19.97	25.49
KRH08639	Soybean	mitochondrion, plastid	20.11	25.49
Bra006187.1-P	Field mustard	plastid	10.34	25.43
KRH25652	Soybean	cytosol, golgi	19.13	25.37
PGSC0003DMT400008757	Potato	cytosol	17.6	25.3
PGSC0003DMT400025074	Potato	cytosol	19.27	25.0
KRH40400	Soybean	plastid	20.11	24.96
Solyc06g007740.1.1	Tomato	cytosol	20.53	24.92
KRH08625	Soybean	plastid	19.97	24.83
Bra036649.1-P	Field mustard	cytosol	13.55	24.81
KRH40513	Soybean	plastid	12.01	24.5
PGSC0003DMT400053185	Potato	mitochondrion	19.97	24.24
AT3G22470.1	Thale cress	cytosol, mitochondrion	20.81	24.07
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	17.6	24.0
VIT_14s0081g00280.t01	Wine grape	mitochondrion	21.37	23.94
Bra031731.1-P	Field mustard	mitochondrion	16.9	23.82
KRH09121	Soybean	mitochondrion	17.74	23.78
KRH09154	Soybean	mitochondrion	18.44	23.74
Solyc06g007300.1.1	Tomato	extracellular	19.55	23.65
VIT_14s0030g02280.t01	Wine grape	plastid	18.44	23.53
AT1G62670.1	Thale cress	mitochondrion	20.67	23.49
PGSC0003DMT400056663	Potato	plastid	19.27	23.47
PGSC0003DMT400056665	Potato	mitochondrion	19.27	23.43
KRH41817	Soybean	mitochondrion	18.16	23.42
PGSC0003DMT400052971	Potato	mitochondrion	19.27	23.27
AT1G12300.1	Thale cress	mitochondrion	20.67	23.23
Bra026958.1-P	Field mustard	mitochondrion	20.67	23.23
Bra027658.1-P	Field mustard	cytosol, mitochondrion	17.6	23.2
Bra026971.1-P	Field mustard	mitochondrion	20.11	22.89
VIT_14s0030g02260.t01	Wine grape	cytosol	14.11	22.8
AT1G62930.1	Thale cress	plastid	19.97	22.73
PGSC0003DMT400008760	Potato	mitochondrion	18.58	22.7
AT5G16640.1	Thale cress	mitochondrion	15.92	22.62
Bra016762.1-P	Field mustard	mitochondrion	19.13	22.57
KRH39050	Soybean	mitochondrion	16.76	22.56
AT1G62590.1	Thale cress	mitochondrion	19.97	22.56
Bra026836.1-P	Field mustard	cytosol, mitochondrion	15.36	22.4
AT1G12620.1	Thale cress	cytosol, mitochondrion	19.41	22.38
AT1G63080.3	Thale cress	mitochondrion	19.13	22.31
AT1G63150.1	Thale cress	mitochondrion	19.55	22.26
AT1G63130.1	Thale cress	mitochondrion	19.55	22.22
AT1G63070.1	Thale cress	mitochondrion	18.3	22.2
AT1G12700.2	Thale cress	cytosol	19.13	22.17
Bra028267.1-P	Field mustard	mitochondrion	19.27	22.04
KRH31646	Soybean	cytosol	15.92	22.01
KRH09097	Soybean	plastid	17.74	21.78
AT1G12775.1	Thale cress	cytosol, mitochondrion	19.55	21.74
KRH09095	Soybean	plastid	17.74	21.71
PGSC0003DMT400053182	Potato	cytosol	18.16	21.7
Bra026954.1-P	Field mustard	mitochondrion	19.69	21.69
KRH08599	Soybean	cytosol, plastid	20.25	21.67
Solyc04g080120.1.1	Tomato	extracellular	18.44	21.57
Bra036651.1-P	Field mustard	mitochondrion	16.06	21.5
PGSC0003DMT400015293	Potato	mitochondrion	18.3	21.48
PGSC0003DMT400015298	Potato	mitochondrion	18.3	21.48
AT1G63400.1	Thale cress	cytosol, plastid	17.18	21.32
AT1G62720.1	Thale cress	mitochondrion	14.39	21.24
AT1G62910.1	Thale cress	mitochondrion	18.72	21.2
AT1G64583.1	Thale cress	mitochondrion	15.08	21.09
Bra021192.1-P	Field mustard	plastid	14.8	21.03
AT1G64580.1	Thale cress	mitochondrion	15.22	20.84
Bra025516.1-P	Field mustard	cytosol, mitochondrion	13.69	20.55
Bra027026.1-P	Field mustard	mitochondrion	14.8	20.27
PGSC0003DMT400053556	Potato	mitochondrion	12.99	20.26
AT1G62680.2	Thale cress	plastid	15.5	20.26
Bra026957.1-P	Field mustard	mitochondrion	17.04	20.23
AT3G16710.1	Thale cress	mitochondrion	14.11	19.92
AT1G62914.1	Thale cress	mitochondrion	14.66	19.89
AT1G64100.2	Thale cress	cytosol	22.35	19.85
AT5G41170.1	Thale cress	mitochondrion	14.39	19.54
AT1G06580.1	Thale cress	mitochondrion	13.55	19.4
Bra026401.1-P	Field mustard	plastid	14.25	19.07
KRH09085	Soybean	mitochondrion	17.88	18.18
KRH12873	Soybean	cytosol	17.18	17.67
AT4G26800.2	Thale cress	mitochondrion, plastid	12.57	17.51
Bra027656.1-P	Field mustard	cytosol	22.49	17.11
Bra027726.1-P	Field mustard	mitochondrion	11.17	16.99
KRH39064	Soybean	cytosol	20.53	15.17
Bra016758.1-P	Field mustard	plastid	19.83	12.25

Protein Annotations

EnsemblPlants:TraesCS1A01G067000.1	EnsemblPlantsGene:TraesCS1A01G067000	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:+:49245482..49247632

Molecular Weight (calculated)

79171.5 Da

IEP (calculated)

7.517

GRAVY (calculated)

0.030

Length

716 amino acids

Sequence
(BLAST)

001: MPRRSRQAGG AAHSLHLRHP DELLLPRASS GPRACLIWPP PKDRPQTNEI VASTVLKCLC CAKRTDEAVN VLIHRMSDLG CVPNEFSYKT VLKSLCEDSR
101: SQRALDLLRV MAKGDGCSPC VVSYSTVIYG FFKEGKVGKA CNLFHEMTQQ GVVSDVVTYN SIIDALCKAR AMDKAELFLR QMVDDDIRPN GVTYNAMIHG
201: YSTLGQWKKA TQMFREMTSR GLVPDTVTWN SCMASLCKHG RSREAAELLY SMAAKGHKPN VVSYSTLLHG YANEGCFADM VNLFNSMVGK GIVPDHHVFN
301: IFINAYAKCG MMDEVMHMLT EMREQGMSPD VCTYATIIAA LCRMGRLADA VDNFNQMIGK GVQPSKVVYR SLIQGFCTHG DLVKAKEFIF EMTDKCICRP
401: TIVFFNSIMH SLCNEGRVID AHHIFDLVID IGERPDLIAF NTLIDGYCLV GNMEKALGVL DSMVSAGIEP TVVTYSSLIS GYCKSGRLDD GVILFREMEH
501: KRVKPDTVAY NIILDGLFHA GATIAAKKLF NEMIESGTAV SISTYRIVLG GFCRNNCTDE AIVLFQKLGA MNVKFDIAIL NTMINAMYKV QRREEANDLF
601: ASLPACGLVP NASTYGVVIQ NLLKEGSLEE ADNMFSSMEK SGCAPSSRLI NYIIRTLLEK GEIVNAANYM SKVDGKIISF EASTTSLLLS LFSEKGKYQE
701: QLQLLPAKYQ FFGGVI

Best Arabidopsis Sequence Match ( AT1G12300.1 )
(BLAST)

001: MVKLMIRRLS SQVSKFVQPR LLETGTLRIA LINCPNELSF CCERGFSAFS DRNLSYRERL RSGLVDIKAD DAIDLFRDMI HSRPLPTVID FSRLFSAIAK
101: TKQYDLVLAL CKQMELKGIA HNLYTLSIMI NCFCRCRKLC LAFSAMGKII KLGYEPNTIT FSTLINGLCL EGRVSEALEL VDRMVEMGHK PDLITINTLV
201: NGLCLSGKEA EAMLLIDKMV EYGCQPNAVT YGPVLNVMCK SGQTALAMEL LRKMEERNIK LDAVKYSIII DGLCKHGSLD NAFNLFNEME MKGITTNIIT
301: YNILIGGFCN AGRWDDGAKL LRDMIKRKIN PNVVTFSVLI DSFVKEGKLR EAEELHKEMI HRGIAPDTIT YTSLIDGFCK ENHLDKANQM VDLMVSKGCD
401: PNIRTFNILI NGYCKANRID DGLELFRKMS LRGVVADTVT YNTLIQGFCE LGKLNVAKEL FQEMVSRKVP PNIVTYKILL DGLCDNGESE KALEIFEKIE
501: KSKMELDIGI YNIIIHGMCN ASKVDDAWDL FCSLPLKGVK PGVKTYNIMI GGLCKKGPLS EAELLFRKME EDGHAPDGWT YNILIRAHLG DGDATKSVKL
601: IEELKRCGFS VDASTIKMVI DMLSDGRLKK SFLDMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g12300, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q0WKV3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.