Factsheet for TraesCS1A01G066600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G055500.1	Wheat	mitochondrion	54.37	65.9
TraesCS1A01G074000.1	Wheat	mitochondrion	59.32	55.12
TraesCS1A01G073800.1	Wheat	mitochondrion	64.64	51.05
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	30.8	32.02
TraesCS1A01G067700.1	Wheat	extracellular	39.54	30.86
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	47.15	24.65
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	44.49	24.17
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	63.5	23.29
TraesCS1A01G067600.1	Wheat	mitochondrion	67.3	21.77
TraesCS1A01G054700.2	Wheat	mitochondrion	66.92	21.67
TraesCS1A01G055800.1	Wheat	mitochondrion	63.12	21.53
TraesCS1A01G067400.1	Wheat	mitochondrion	66.16	21.09
Os04t0349600-01	Rice	plastid	30.8	20.93
TraesCS6A01G311600.1	Wheat	mitochondrion	64.26	20.22
TraesCS6A01G015000.1	Wheat	mitochondrion	31.56	20.0
TraesCS1A01G073600.1	Wheat	mitochondrion	29.28	19.64
KXG28799	Sorghum	plastid	54.75	18.95
TraesCS1A01G031700.1	Wheat	plastid	49.81	17.68
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	24.71	17.2
TraesCS1A01G054500.1	Wheat	mitochondrion	50.95	17.18
Zm00001d007531_P001	Maize	plastid	52.85	17.08
Zm00001d007548_P001	Maize	plastid	52.85	17.08
Zm00001d007555_P001	Maize	plastid	52.85	17.08
Zm00001d007559_P001	Maize	plastid	52.85	17.01
TraesCS2A01G530600.1	Wheat	cytosol	47.53	16.34
Zm00001d007534_P001	Maize	plastid	45.25	15.32
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	26.24	13.5
TraesCS1A01G067000.1	Wheat	mitochondrion	33.46	12.29
TraesCS1A01G057300.1	Wheat	cytosol	33.08	12.12
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	31.94	11.76
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	33.08	11.36
AT1G62914.1	Thale cress	mitochondrion	21.29	10.61
TraesCS2A01G526200.1	Wheat	golgi	26.62	10.28
TraesCS2A01G531000.1	Wheat	golgi	26.24	10.16
TraesCS1A01G031600.1	Wheat	cytosol	25.1	9.97
AT1G62670.1	Thale cress	mitochondrion	23.57	9.84
AT1G63400.1	Thale cress	cytosol, plastid	20.91	9.53
AT1G63130.1	Thale cress	mitochondrion	22.43	9.37
AT1G63070.1	Thale cress	mitochondrion	20.91	9.32
AT1G63080.3	Thale cress	mitochondrion	21.67	9.28
AT1G63330.2	Thale cress	cytosol	19.39	9.12
AT1G62930.1	Thale cress	plastid	21.67	9.06
AT1G63150.1	Thale cress	mitochondrion	20.91	8.74
AT1G62910.1	Thale cress	mitochondrion	20.53	8.54
Bra026958.1-P	Field mustard	mitochondrion	20.53	8.48
KRH09084	Soybean	plastid	16.35	8.41
AT1G62590.1	Thale cress	mitochondrion	20.15	8.36
AT1G12300.1	Thale cress	mitochondrion	20.15	8.32
AT1G12775.1	Thale cress	cytosol, mitochondrion	20.15	8.23
Bra028267.1-P	Field mustard	mitochondrion	19.01	7.99
Bra026971.1-P	Field mustard	mitochondrion	19.01	7.95
Bra026954.1-P	Field mustard	mitochondrion	19.39	7.85
Os04t0351333-00	Rice	cytosol	25.86	7.74
AT3G22470.1	Thale cress	cytosol, mitochondrion	17.87	7.59
VIT_14s0030g02280.t01	Wine grape	plastid	15.97	7.49
AT1G12620.1	Thale cress	cytosol, mitochondrion	17.49	7.41
KRH40513	Soybean	plastid	9.89	7.41
KRH48615	Soybean	mitochondrion	15.21	7.34
Bra016762.1-P	Field mustard	mitochondrion	16.73	7.25
VIT_14s0081g00270.t01	Wine grape	plastid	15.97	7.24
KRH08277	Soybean	plastid	15.59	7.23
PGSC0003DMT400053556	Potato	mitochondrion	12.55	7.19
KRH39050	Soybean	mitochondrion	14.45	7.14
Solyc06g007280.2.1	Tomato	cytosol	6.84	7.06
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	14.07	7.05
KRH09097	Soybean	plastid	15.59	7.03
VIT_14s0081g00120.t01	Wine grape	plastid	15.59	7.03
KRH09095	Soybean	plastid	15.59	7.01
Bra027658.1-P	Field mustard	cytosol, mitochondrion	14.45	7.0
AT1G12700.2	Thale cress	cytosol	16.35	6.96
AT5G16640.1	Thale cress	mitochondrion	13.31	6.94
Bra021192.1-P	Field mustard	plastid	13.31	6.94
VIT_12s0028g02320.t01	Wine grape	mitochondrion	12.55	6.92
KRH39112	Soybean	cytosol	12.93	6.84
KRH17148	Soybean	mitochondrion	14.07	6.79
Bra026882.1-P	Field mustard	cytosol	13.69	6.74
KRH09121	Soybean	mitochondrion	13.69	6.74
KRH08639	Soybean	mitochondrion, plastid	14.45	6.73
KRH08628	Soybean	plastid	14.07	6.7
KRH39072	Soybean	cytosol	12.55	6.65
KRH39054	Soybean	cytosol	12.55	6.64
KRH39057	Soybean	cytosol	12.55	6.64
KRH39074	Soybean	cytosol	12.55	6.64
AT1G64100.2	Thale cress	cytosol	20.15	6.58
AT1G64580.1	Thale cress	mitochondrion	12.93	6.5
Bra027026.1-P	Field mustard	mitochondrion	12.93	6.5
Bra026957.1-P	Field mustard	mitochondrion	14.83	6.47
KRH39004	Soybean	cytosol	12.17	6.44
AT4G26800.2	Thale cress	mitochondrion, plastid	12.55	6.42
VIT_14s0081g00280.t01	Wine grape	mitochondrion	15.59	6.42
AT1G06580.1	Thale cress	mitochondrion	12.17	6.4
AT1G62720.1	Thale cress	mitochondrion	11.79	6.39
Solyc04g080120.1.1	Tomato	extracellular	14.83	6.37
Bra027726.1-P	Field mustard	mitochondrion	11.41	6.37
TraesCS1A01G054800.1	Wheat	cytosol	14.07	6.36
Bra026401.1-P	Field mustard	plastid	12.93	6.36
Bra036651.1-P	Field mustard	mitochondrion	12.93	6.36
Bra026836.1-P	Field mustard	cytosol, mitochondrion	11.79	6.31
KRH39066	Soybean	cytosol	13.31	6.31
PGSC0003DMT400056663	Potato	plastid	14.07	6.29
KRH08607	Soybean	cytosol	13.31	6.24
PGSC0003DMT400015293	Potato	mitochondrion	14.45	6.23
PGSC0003DMT400015298	Potato	mitochondrion	14.45	6.23
KRH31646	Soybean	cytosol	12.17	6.18
KRH08671	Soybean	cytosol, mitochondrion	12.93	6.15
KRH41817	Soybean	mitochondrion	12.93	6.13
KRH09154	Soybean	mitochondrion	12.93	6.12
KRH09085	Soybean	mitochondrion	16.35	6.11
Solyc06g007300.1.1	Tomato	extracellular	13.69	6.08
KRH08625	Soybean	plastid	13.31	6.08
KRH40400	Soybean	plastid	13.31	6.07
PGSC0003DMT400008760	Potato	mitochondrion	13.31	5.97
KRH08636	Soybean	cytosol	11.79	5.94
PGSC0003DMT400053185	Potato	mitochondrion	13.31	5.93
AT3G16710.1	Thale cress	mitochondrion	11.41	5.92
AT1G64583.1	Thale cress	mitochondrion	11.41	5.86
PGSC0003DMT400025074	Potato	cytosol	12.17	5.8
PGSC0003DMT400056665	Potato	mitochondrion	12.93	5.77
Solyc06g007740.1.1	Tomato	cytosol	12.93	5.76
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	11.03	5.74
PGSC0003DMT400053182	Potato	cytosol	12.93	5.68
AT1G62680.2	Thale cress	plastid	11.79	5.66
AT5G41170.1	Thale cress	mitochondrion	11.03	5.5
Bra025516.1-P	Field mustard	cytosol, mitochondrion	9.89	5.45
PGSC0003DMT400008757	Potato	cytosol	10.27	5.42
PGSC0003DMT400052971	Potato	mitochondrion	12.17	5.4
VIT_14s0081g00110.t01	Wine grape	cytosol	9.89	5.3
Bra027656.1-P	Field mustard	cytosol	18.63	5.21
Bra031731.1-P	Field mustard	mitochondrion	9.51	4.92
KRH25652	Soybean	cytosol, golgi	9.51	4.63
Bra036649.1-P	Field mustard	cytosol	6.84	4.6
KRH08599	Soybean	cytosol, plastid	11.03	4.33
Bra016758.1-P	Field mustard	plastid	18.63	4.23
KRH39064	Soybean	cytosol	15.21	4.13
PGSC0003DMT400025087	Potato	endoplasmic reticulum	7.6	4.04
PGSC0003DMT400025067	Potato	cytosol	6.84	3.78
Bra006187.1-P	Field mustard	plastid	4.18	3.78
KRH12873	Soybean	cytosol	9.89	3.74
Solyc06g005220.2.1	Tomato	cytosol	5.7	3.69
Bra026884.1-P	Field mustard	cytosol	5.7	3.27
KRH09082	Soybean	cytosol	1.14	0.74
Bra027636.1-P	Field mustard	cytosol	0.76	0.62
TraesCS1A01G055600.1	Wheat	cytosol	0.76	0.62
TraesCS1D01G067600.1	Wheat	cytosol	0.76	0.55
TraesCS2A01G531100.1	Wheat	cytosol	1.14	0.53
PGSC0003DMT400052977	Potato	cytosol	0.76	0.51
TraesCS1A01G056000.1	Wheat	cytosol	0.76	0.5
VIT_14s0030g02260.t01	Wine grape	cytosol	0.76	0.45
TraesCS6A01G083000.1	Wheat	cytosol	0.76	0.44
KXG35774	Sorghum	cytosol, mitochondrion	0.76	0.42
TraesCS1A01G067800.1	Wheat	cytosol	0.38	0.27
TraesCS1A01G073700.1	Wheat	cytosol	0.38	0.26
TraesCS6A01G014600.1	Wheat	cytosol	0.38	0.25
TraesCS1B01G084800.1	Wheat	cytosol	0.38	0.22
Bra027029.1-P	Field mustard	mitochondrion	0.0	0.0
CDX68679	Canola	cytosol	0.0	0.0
PGSC0003DMT400008759	Potato	cytosol	0.0	0.0
Solyc06g007810.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G066600.1	EnsemblPlantsGene:TraesCS1A01G066600	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:48998937..48999728

Molecular Weight (calculated)

29046.5 Da

IEP (calculated)

9.064

GRAVY (calculated)

-0.052

Length

263 amino acids

Sequence
(BLAST)

001: MPRRLYSTRP MSYTRLCRRL SSSSTTTSSS SPSWCPHAAF ATATERVRAG TLSPEHVHHL FDKLLRQATP VPERSLNGFL AALAHAPDSS ACKDGPALVL
101: AIFNRVSREE AGLRVATPAI CTYCILMDCC CRARRRDLGL AFFGRLVRTG LKTNQIAANN LLKCLCHAKR TDEAVSVLLH RMSDLGCAPN CILYNTVLKS
201: LCEDSRSQQA LDLLQMMAKE GGVCSPSLVK YNTVIHGFFK EGQVSKACNL YHEMMSKGLC LMW

Best Arabidopsis Sequence Match ( AT1G09900.1 )
(BLAST)

001: MDLMVSTSSA QEGFCLIQQF HREYKRGNKL DVSCRTSGSI SSKIPLGSRK RNRLVLVSAA SKVESSGLNG RAQKFETLSS GYSNSNGNGH YSSVNSSFAL
101: EDVESNNHLR QMVRTGELEE GFKFLENMVY HGNVPDIIPC TTLIRGFCRL GKTRKAAKIL EILEGSGAVP DVITYNVMIS GYCKAGEINN ALSVLDRMSV
201: SPDVVTYNTI LRSLCDSGKL KQAMEVLDRM LQRDCYPDVI TYTILIEATC RDSGVGHAMK LLDEMRDRGC TPDVVTYNVL VNGICKEGRL DEAIKFLNDM
301: PSSGCQPNVI THNIILRSMC STGRWMDAEK LLADMLRKGF SPSVVTFNIL INFLCRKGLL GRAIDILEKM PQHGCQPNSL SYNPLLHGFC KEKKMDRAIE
401: YLERMVSRGC YPDIVTYNTM LTALCKDGKV EDAVEILNQL SSKGCSPVLI TYNTVIDGLA KAGKTGKAIK LLDEMRAKDL KPDTITYSSL VGGLSREGKV
501: DEAIKFFHEF ERMGIRPNAV TFNSIMLGLC KSRQTDRAID FLVFMINRGC KPNETSYTIL IEGLAYEGMA KEALELLNEL CNKGLMKKSS AEQVAGKM

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g09900 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDF8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.