Factsheet for TraesCS1A01G073700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G137900.1
TraesCS4B01G148100.1
TraesCS4D01G153300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62670.1	TraesCS4A01G137900.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4B01G148100.1	AT4G26630.1	25387881
AT1G62670.1	TraesCS4D01G153300.1	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G067800.1	Wheat	cytosol	56.88	58.56
TraesCS1A01G056000.1	Wheat	cytosol	60.26	57.71
TraesCS1A01G055600.1	Wheat	cytosol	48.57	57.54
TraesCS1D01G076500.1	Wheat	mitochondrion	97.66	56.63
TraesCS1A01G054800.1	Wheat	cytosol	64.16	42.44
TraesCS6A01G014600.1	Wheat	cytosol	38.44	37.47
TraesCS2A01G531100.1	Wheat	cytosol	54.03	36.56
TraesCS1A01G067000.1	Wheat	mitochondrion	67.53	36.31
TraesCS1A01G031600.1	Wheat	cytosol	60.26	35.05
TraesCS1A01G057300.1	Wheat	cytosol	64.94	34.82
TraesCS1A01G067600.1	Wheat	mitochondrion	70.39	33.33
TraesCS1A01G067400.1	Wheat	mitochondrion	71.17	33.21
TraesCS6A01G311600.1	Wheat	mitochondrion	71.69	33.01
TraesCS1A01G054500.1	Wheat	mitochondrion	66.49	32.82
KXG35774	Sorghum	cytosol, mitochondrion	40.26	32.77
TraesCS1A01G073600.1	Wheat	mitochondrion	32.47	31.89
TraesCS1A01G057400.1	Wheat	mitochondrion, plastid	59.22	31.8
TraesCS1A01G054700.2	Wheat	mitochondrion	67.01	31.77
TraesCS1A01G055800.1	Wheat	mitochondrion	61.56	30.74
TraesCS2A01G526200.1	Wheat	golgi	53.25	30.1
TraesCS2A01G531000.1	Wheat	golgi	52.73	29.9
KXG28799	Sorghum	plastid	55.84	28.29
TraesCS6A01G083000.1	Wheat	cytosol	32.73	27.63
Zm00001d007534_P001	Maize	plastid	55.32	27.41
TraesCS2A01G530600.1	Wheat	cytosol	54.29	27.32
Zm00001d007555_P001	Maize	plastid	56.62	26.78
Zm00001d007548_P001	Maize	plastid	55.58	26.29
Zm00001d007559_P001	Maize	plastid	55.58	26.19
Zm00001d007531_P001	Maize	plastid	55.06	26.04
Os04t0350000-02	Rice	cytosol, mitochondrion, plastid	51.69	25.98
Os04t0351333-00	Rice	cytosol	58.44	25.6
Solyc06g007810.1.1	Tomato	cytosol	17.14	24.63
TraesCS1A01G031700.1	Wheat	plastid	46.75	24.29
CDX68679	Canola	cytosol	6.75	22.61
TraesCS6A01G014800.1	Wheat	cytosol, mitochondrion	39.74	21.43
TraesCS2A01G530300.1	Wheat	mitochondrion, plastid	27.53	20.74
PGSC0003DMT400008759	Potato	cytosol	16.36	19.75
PGSC0003DMT400052977	Potato	cytosol	16.36	16.2
Bra006187.1-P	Field mustard	plastid	12.21	16.15
VIT_14s0030g02260.t01	Wine grape	cytosol	17.92	15.58
Solyc06g005220.2.1	Tomato	cytosol	15.32	14.53
Bra027636.1-P	Field mustard	cytosol	12.21	14.51
VIT_14s0081g00110.t01	Wine grape	cytosol	18.44	14.46
TraesCS6A01G099100.1	Wheat	cytosol, mitochondrion	13.77	14.02
Bra026884.1-P	Field mustard	cytosol	16.36	13.73
KRH39072	Soybean	cytosol	17.66	13.71
KRH39004	Soybean	cytosol	17.66	13.68
KRH39074	Soybean	cytosol	17.66	13.68
KRH39057	Soybean	cytosol	17.14	13.28
Bra026836.1-P	Field mustard	cytosol, mitochondrion	16.88	13.24
KRH39054	Soybean	cytosol	16.88	13.08
KRH39112	Soybean	cytosol	16.62	12.88
Bra026882.1-P	Field mustard	cytosol	17.66	12.73
KRH08635	Soybean	cytosol, golgi, mitochondrion, plastid	16.62	12.67
TraesCS1A01G067700.1	Wheat	extracellular	10.91	12.46
PGSC0003DMT400008757	Potato	cytosol	16.1	12.45
Bra031731.1-P	Field mustard	mitochondrion	16.36	12.4
KRH31646	Soybean	cytosol	16.62	12.36
VIT_14s0081g00120.t01	Wine grape	plastid	18.7	12.35
KRH08636	Soybean	cytosol	16.62	12.26
VIT_12s0028g02320.t01	Wine grape	mitochondrion	15.06	12.16
KRH09082	Soybean	cytosol	12.73	12.01
KRH48615	Soybean	mitochondrion	16.88	11.93
KRH39066	Soybean	cytosol	17.14	11.89
TraesCS6A01G099300.1	Wheat	cytosol, mitochondrion	14.81	11.78
PGSC0003DMT400025067	Potato	cytosol	14.55	11.76
TraesCS6A01G101100.1	Wheat	mitochondrion, plastid	15.32	11.73
VIT_14s0081g00270.t01	Wine grape	plastid	17.66	11.72
PGSC0003DMT400025087	Potato	endoplasmic reticulum	15.06	11.72
KRH41817	Soybean	mitochondrion	16.62	11.53
KRH25652	Soybean	cytosol, golgi	16.1	11.48
PGSC0003DMT400025074	Potato	cytosol	16.36	11.41
KRH08671	Soybean	cytosol, mitochondrion	16.36	11.39
PGSC0003DMT400053185	Potato	mitochondrion	17.4	11.36
KRH09154	Soybean	mitochondrion	16.36	11.33
VIT_14s0081g00280.t01	Wine grape	mitochondrion	18.7	11.27
KRH17148	Soybean	mitochondrion	15.84	11.19
Bra027029.1-P	Field mustard	mitochondrion	7.01	11.11
PGSC0003DMT400056665	Potato	mitochondrion	16.88	11.04
PGSC0003DMT400053182	Potato	cytosol	17.14	11.02
Solyc06g007740.1.1	Tomato	cytosol	16.88	11.02
KRH08277	Soybean	plastid	16.1	10.93
KRH40400	Soybean	plastid	16.36	10.92
AT1G63330.2	Thale cress	cytosol	15.84	10.91
PGSC0003DMT400056663	Potato	plastid	16.62	10.88
KRH08639	Soybean	mitochondrion, plastid	15.84	10.8
KRH08628	Soybean	plastid	15.32	10.69
Bra026971.1-P	Field mustard	mitochondrion	17.4	10.65
Solyc04g080120.1.1	Tomato	extracellular	16.88	10.62
Bra026958.1-P	Field mustard	mitochondrion	17.4	10.52
KRH08607	Soybean	cytosol	15.32	10.52
AT1G62930.1	Thale cress	plastid	17.14	10.49
Bra036649.1-P	Field mustard	cytosol	10.65	10.49
Solyc06g007300.1.1	Tomato	extracellular	16.1	10.47
PGSC0003DMT400052971	Potato	mitochondrion	16.1	10.46
AT3G16710.1	Thale cress	mitochondrion	13.77	10.45
KRH08625	Soybean	plastid	15.58	10.42
Bra027658.1-P	Field mustard	cytosol, mitochondrion	14.55	10.31
PGSC0003DMT400008760	Potato	mitochondrion	15.58	10.24
Bra027726.1-P	Field mustard	mitochondrion	12.47	10.19
AT3G22470.1	Thale cress	cytosol, mitochondrion	16.36	10.18
AT1G63070.1	Thale cress	mitochondrion	15.58	10.17
Bra021192.1-P	Field mustard	plastid	13.25	10.12
Bra025516.1-P	Field mustard	cytosol, mitochondrion	12.47	10.06
AT1G12700.2	Thale cress	cytosol	16.1	10.03
AT1G62670.1	Thale cress	mitochondrion	16.36	10.0
PGSC0003DMT400015293	Potato	mitochondrion	15.84	10.0
PGSC0003DMT400015298	Potato	mitochondrion	15.84	10.0
KRH09084	Soybean	plastid	13.25	9.98
Bra026957.1-P	Field mustard	mitochondrion	15.58	9.95
Bra036651.1-P	Field mustard	mitochondrion	13.77	9.91
Bra028267.1-P	Field mustard	mitochondrion	16.1	9.9
AT1G62680.2	Thale cress	plastid	14.03	9.85
Bra026954.1-P	Field mustard	mitochondrion	16.62	9.85
AT1G12620.1	Thale cress	cytosol, mitochondrion	15.84	9.82
AT5G16640.1	Thale cress	mitochondrion	12.73	9.72
Bra016762.1-P	Field mustard	mitochondrion	15.32	9.72
AT1G63130.1	Thale cress	mitochondrion	15.84	9.68
AT1G12775.1	Thale cress	cytosol, mitochondrion	16.1	9.63
AT1G62590.1	Thale cress	mitochondrion	15.84	9.62
KRH39050	Soybean	mitochondrion	13.25	9.59
AT1G12300.1	Thale cress	mitochondrion	15.84	9.58
AT5G41170.1	Thale cress	mitochondrion	12.99	9.49
AT1G64580.1	Thale cress	mitochondrion	12.73	9.37
KRH08599	Soybean	cytosol, plastid	16.1	9.27
AT1G63150.1	Thale cress	mitochondrion	15.06	9.22
KRH12873	Soybean	cytosol	16.62	9.2
KRH09121	Soybean	mitochondrion	12.73	9.18
AT1G63080.3	Thale cress	mitochondrion	14.55	9.12
AT1G64100.2	Thale cress	cytosol	18.96	9.06
AT1G62910.1	Thale cress	mitochondrion	14.81	9.02
AT1G06580.1	Thale cress	mitochondrion	11.69	9.0
Bra026401.1-P	Field mustard	plastid	12.47	8.97
KRH00678	Soybean	endoplasmic reticulum, extracellular, plastid	12.21	8.95
VIT_14s0030g02280.t01	Wine grape	plastid	12.99	8.91
KRH09095	Soybean	plastid	13.51	8.89
Bra027026.1-P	Field mustard	mitochondrion	11.95	8.8
KRH09097	Soybean	plastid	13.25	8.75
PGSC0003DMT400053556	Potato	mitochondrion	10.39	8.71
AT1G64583.1	Thale cress	mitochondrion	11.43	8.59
AT1G62720.1	Thale cress	mitochondrion	10.65	8.45
TraesCS6A01G015000.1	Wheat	mitochondrion	9.09	8.43
Bra027656.1-P	Field mustard	cytosol	20.52	8.4
Solyc06g007280.2.1	Tomato	cytosol	5.19	7.84
KRH09085	Soybean	mitochondrion	13.77	7.53
KRH39064	Soybean	cytosol	18.7	7.43
AT1G63400.1	Thale cress	cytosol, plastid	10.91	7.28
AT4G26800.2	Thale cress	mitochondrion, plastid	9.09	6.81
KRH40513	Soybean	plastid	5.45	5.98
AT1G62914.1	Thale cress	mitochondrion	7.53	5.49
Bra016758.1-P	Field mustard	plastid	15.32	5.09
Os04t0349600-01	Rice	plastid	3.64	3.62
TraesCS1A01G055500.1	Wheat	mitochondrion	1.04	1.84
TraesCS1A01G074000.1	Wheat	mitochondrion	1.3	1.77
TraesCS1A01G066600.1	Wheat	mitochondrion	0.26	0.38
TraesCS1A01G073800.1	Wheat	mitochondrion	0.0	0.0
TraesCS6A01G014500.1	Wheat	cytosol, mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:TraesCS1A01G073700.1	EnsemblPlantsGene:TraesCS1A01G073700	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF874
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	TIGRFAMs:TIGR00756
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr1A:-:57403501..57404820

Molecular Weight (calculated)

42686.4 Da

IEP (calculated)

7.691

GRAVY (calculated)

0.023

Length

385 amino acids

Sequence
(BLAST)

001: MINLFNSMEG NGIVADCNVF NILIDAYAKC GMMHEAMLIF TKMREQGVSP NVCTYATVIA ALCRMGRLSD AMGKLNEMIA TGLQPDVAIY TSLIQGFCTH
101: GDLGKVKELV SEMMNKVGKM DKAFKVLDDM VSAGIEPDVY TYTTLLDGYS RNGRIDDGLT LFSEMMHKKI KPTTATYGTL LNGLFRAWRT ASAKKMIHEM
201: IESGTTVSLS IYAIILEGLR RNNCTDEAIT LFQKVRAMNI KLDVAILNTM INAMFKVQRR EEANDLFASI SASGLVPNAS TYRTMITNLL KEGLVEEAEN
301: MLSSMEKSCC APDSRLINDT IRILLEQGEV VKAGNYMSRV DGKSISLEAS TTSLLIRLFS REGKYREKIK LLPVKYQFFG GATVE

Best Arabidopsis Sequence Match ( AT1G62590.1 )
(BLAST)

001: MRISISSVVS STTSRIVHRN LQGKGNPRIA PSSIDLCGMC YWGRAFSSGS GDYREILRNG LHDMKLDDAI GLFGGMVKSR PLPSIVEFNK LLSAIAKMKK
101: FDVVISLGEK MQRLEIVHGL YTYNILINCF CRRSQISLAL ALLGKMMKLG YEPSIVTLSS LLNGYCHGKR ISDAVALVDQ MVEMGYRPDT ITFTTLIHGL
201: FLHNKASEAV ALVDRMVQRG CQPNLVTYGV VVNGLCKRGD TDLALNLLNK MEAAKIEADV VIFNTIIDSL CKYRHVDDAL NLFKEMETKG IRPNVVTYSS
301: LISCLCSYGR WSDASQLLSD MIEKKINPNL VTFNALIDAF VKEGKFVEAE KLYDDMIKRS IDPDIFTYNS LVNGFCMHDR LDKAKQMFEF MVSKDCFPDV
401: VTYNTLIKGF CKSKRVEDGT ELFREMSHRG LVGDTVTYTT LIQGLFHDGD CDNAQKVFKQ MVSDGVPPDI MTYSILLDGL CNNGKLEKAL EVFDYMQKSE
501: IKLDIYIYTT MIEGMCKAGK VDDGWDLFCS LSLKGVKPNV VTYNTMISGL CSKRLLQEAY ALLKKMKEDG PLPNSGTYNT LIRAHLRDGD KAASAELIRE
601: MRSCRFVGDA STIGLVANML HDGRLDKSFL DMLS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62590 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXD8]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.